Chromosomal mapping and nucleotide sequence of two tandem repeats of Atlantic salmon 5S rDNA

1994 ◽  
Vol 67 (1) ◽  
pp. 31-36 ◽  
Author(s):  
A.M. Pendas ◽  
P. Moran ◽  
J.P. Freije ◽  
E. Garcia-Vazquez
Genome ◽  
1998 ◽  
Vol 41 (1) ◽  
pp. 129-133 ◽  
Author(s):  
F. Pelliccia ◽  
R. Barzotti ◽  
E.V. Volpi ◽  
E. Bucciarelli ◽  
A. Rocchi

Genome ◽  
1998 ◽  
Vol 41 (1) ◽  
pp. 129-133 ◽  
Author(s):  
F Pelliccia ◽  
R Barzotti ◽  
E V Volpi ◽  
E Bucciarelli ◽  
A Rocchi

In this investigation we analysed the 5S rRNA genes of the isopod crustacean Proasellus coxalis. 5S rDNA hybridization of digested genomic DNA and amplification by PCR demonstrate that these genes are organized in tandem repeats of 589 bp, 120 of which represent the coding sequence and 469 the spacer sequence. Proasellus coxalis is the first crustacean species in which 5S rRNA genes have been found tandemly arranged without being linked to other repeated genes. The PCR product has been used as a probe in FISH to locate the 5S rRNA genes on two chromosome pairs of the P. coxalis karyotype. Comparison of the 5S rDNA sequence of this species with previously published sequences of six other crustacean species shows the existence of a good correlation between phylogenetic relationships and sequence identity.


2006 ◽  
Vol 29 (2) ◽  
pp. 251-256 ◽  
Author(s):  
Lessandra Viviane de Rosa Santos ◽  
Fausto Foresti ◽  
Adriane Pinto Wasko ◽  
Claudio Oliveira ◽  
Cesar Martins

2019 ◽  
Vol 157 (4) ◽  
pp. 239-248 ◽  
Author(s):  
Amanda T. Borges ◽  
Marcelo B. Cioffi ◽  
Luiz A.C. Bertollo ◽  
Rodrigo X. Soares ◽  
Gideão W.W.F. Costa ◽  
...  

Centropomus is the sole genus of the Centropomidae family (Teleostei), comprising 12 species widely distributed throughout the Western Atlantic and Eastern Pacific, with 6 of them occurring in the Western Atlantic in extensive sympatry. Their life history and phylogenetic relationships are well characterized; however, aspects of chromosomal evolution are still unknown. Here, cytogenetic analyses of 2 Centropomus species of great economic value (C. undecimalis and C. mexicanus) were performed using conventional (Giemsa, Ag-NOR, and fluorochrome staining, C- and replication banding) and molecular (chromosomal mapping of 18S and 5S rDNA, H2A-H2B and H3 hisDNA, and (TTAGGG)n repeats) approaches. The karyotypes of both species were composed of 48 solely acrocentric chromosomes (2n = 48; FN = 48), but the single ribosomal site was located in varying positions in the long arms of the second largest chromosome pair. Replication bands were generally similar, although conspicuous differences were observed in some chromosome regions. In both species, the histone H3 genes were located on 3 apparently homeologous chromosome pairs, but the exact position of these clusters differed slightly. Interspecific hisDNA and rDNA site displacements can indicate the occurrence of multiple paracentric inversions during the evolutionary diversification of the Centropomus genomes. Although the karyotypes remained similar in both species, our data demonstrate an unsuspected microstructural reorganization between them, driven most likely by a series of paracentric inversions.


Genetica ◽  
2020 ◽  
Vol 148 (1) ◽  
pp. 25-32 ◽  
Author(s):  
Diovani Piscor ◽  
Leonardo Marcel Paiz ◽  
Lucas Baumgärtner ◽  
Fiorindo José Cerqueira ◽  
Carlos Alexandre Fernandes ◽  
...  

Genes ◽  
2020 ◽  
Vol 11 (6) ◽  
pp. 659
Author(s):  
Fabilene Gomes Paim ◽  
Mauro Nirchio ◽  
Claudio Oliveira ◽  
Anna Rita Rossi

The freshwater fish species Dormitator latifrons, commonly named the Pacific fat sleeper, is an important food resource in CentralSouth America, yet almost no genetic information on it is available. A cytogenetic analysis of this species was undertaken by standard and molecular techniques (chromosomal mapping of 18S rDNA, 5S rDNA, and telomeric repeats), aiming to describe the karyotype features, verify the presence of sex chromosomes described in congeneric species, and make inferences on chromosome evolution in the genus. The karyotype (2n = 46) is mainly composed of metacentric and submetacentic chromosomes, with nucleolar organizer regions (NORs) localized on the short arms of submetacentric pair 10. The presence of XX/XY sex chromosomes was observed, with the X chromosome carrying the 5S rDNA sequences. These heterochromosomes likely appeared before 1 million years ago, since they are shared with another derived Dormitator species (Dormitator maculatus) distributed in the Western Atlantic. Telomeric repeats hybridize to the terminal portions of almost all chromosomes; additional interstitial sites are present in the centromeric region, suggesting pericentromeric inversions as the main rearrangement mechanisms that has driven karyotypic evolution in the genus. The data provided here contribute to improving the cytogenetics knowledge of D. latifrons, offering basic information that could be useful in aquaculture farming of this neotropical fish.


Gene ◽  
1983 ◽  
Vol 25 (1) ◽  
pp. 59-66 ◽  
Author(s):  
Robert Yang ◽  
Brian Fristensky ◽  
Alan H. Deutch ◽  
Ru-chih C. Huang ◽  
Y.H. Tan ◽  
...  

Genome ◽  
2006 ◽  
Vol 49 (7) ◽  
pp. 840-850 ◽  
Author(s):  
Jaroslav Fulnecek ◽  
Roman Matyasek ◽  
Ales Kovarik

In plants, 5S ribosomal DNA (5S rDNA) is typically found in hundreds of copies of tandemly arranged units. Nucleotide database searches revealed that the majority of 5S genes (>90%) have repeat lengths that are not simple multiples of a plant nucleosomal unit, ranging in plants from 175–185 bp. To get insight into the chromatin structure, we have determined positions of nucleosomes in the Nicotiana sylvestris and Nicotiana tomentosiformis 5S rDNA units with repeat lengths of about 430 and 645 bp, respectively. Mapping experiments carried out on isolated nucleo somal DNA revealed many (>50) micrococcal nuclease cleavage sites in each class of repeats. Permutation analysis and theoretical computer prediction showed multiple DNA bend sites, mostly located in the nontranscribed spacer region. The distance between bend sites, however, did not correspond to the average spacing of nucleosomes in 5S chromatin (~180 bp). These data indicate that 5S rDNA does not have fixed nucleosomal positioning sites and that units can be wrapped in a number of alternative nucleosome frames. Consequently, accessibility of transcription factors to cognate motifs might vary across the tandem array, potentially influencing gene expression.Key words: Nicotiana, 5S rDNA, heterochromatin, tandem repeats, nucleosomes, DNA curvature.


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