scholarly journals Research on Improved Ray Casting Algorithm and Its Application in Three-Dimensional Reconstruction

2021 ◽  
Vol 2021 ◽  
pp. 1-6
Author(s):  
ZheShu Jia ◽  
DeYun Chen ◽  
Bo Wang
Keyword(s):  
Sampling Method ◽  
Transfer Functions ◽  
Three Dimensional ◽  
Projection Algorithm ◽  
Sampling Point ◽  
Ray Casting ◽  
Weighted Interpolation ◽  
Sampling Points ◽  
Trilinear Interpolation ◽  
Ct Data

Spinal pathology treatment has become an urgent issue to be solved. How to effectively prevent and treat spinal pathology has become a research hotspot in the field of surgery. Aiming at the problem of too long volume rendering time caused by the trilinear interpolation sampling method in the reconstruction and visualization of the vertebra 3D model, an improved ray projection algorithm is proposed to quickly reconstruct a 3D vertebra model from medical CT vertebra images. This method first classifies CT data, assigns corresponding color values and opacity transfer functions to different types of data, and then uses inverse distance-weighted interpolation (IDWI) sampling to replace the trilinear interpolation sampling method for the voxel where the sampling point is located to accelerate the interpolation operation. The color value and opacity of the sampling points are obtained, and finally, the attributes of all the sampling points are synthesized and calculated to obtain the final rendering effect, and the reconstruction of the three-dimensional vertebra model is completed. Experimental results show that the proposed method not only can obtain higher quality rendered images but also has a certain improvement in rendering speed compared with traditional algorithms.

scholarly journals Plane-Based Sampling for Ray Casting Algorithm in Sequential Medical Images

2013 ◽  
Vol 2013 ◽  
pp. 1-5 ◽  
Author(s):  
Lili Lin ◽  
Shengyong Chen ◽  
Yan Shao ◽  
Zichun Gu
Keyword(s):  
Sampling Method ◽  
Three Dimensional ◽  
Ray Casting ◽  
The Novel ◽  
Novel Method ◽  
Fast Reconstruction ◽  
Intersection Points ◽  
Sequential Images ◽  
Ray Casting Algorithm ◽  
Conventional Algorithm

This paper proposes a plane-based sampling method to improve the traditional Ray Casting Algorithm (RCA) for the fast reconstruction of a three-dimensional biomedical model from sequential images. In the novel method, the optical properties of all sampling points depend on the intersection points when a ray travels through an equidistant parallel plan cluster of the volume dataset. The results show that the method improves the rendering speed at over three times compared with the conventional algorithm and the image quality is well guaranteed.

scholarly journals Diversity of parasitoid Hymenoptera in banana germplasm plantation Yogyakarta

2019 ◽  
Vol 23 (1) ◽  
pp. 26
Author(s):  
Ichsan Luqmana Indra Putra
Keyword(s):  
Sampling Method ◽  
Sampling Methods ◽  
Direct Method ◽  
Wiener Index ◽  
Sampling Point ◽  
Sampling Points ◽  
Index Value ◽  
Number Of Individuals ◽  
Pan Traps

Banana is one of the fruits in Indonesia. The development of its production in Indonesia has increased. However, there are several factors that can reduce the production, one of which is pests. Pests on bananas can be controlled with natural enemies, one of which is parasitoid. The study aimed to calculate the diversity and abundance of parasitoids in the Yogyakarta banana germplasm plantation. The research was carried out in an area of approximately 2 Ha from April to June 2018 with sampling taken once a week. Sampling method used was in the form of transect. The determination of the transect point is determined as far as 500m between sampling points. At each sampling point carried out 2 sampling methods. Direct method by taking pests on 3 banana plants at each point and indirect with insect net and yellow pan traps. The results found that Shannon-Wiener Index value was 3.29. 22 Hymenoptera parasitoid families were found with the highest morphospecies were superfamily Chalcidoidea and the highest number of individuals were Scelionidae.

Electron Microscopy and image reconstruction reveal the structural basis for spectrin's elastic properties

1992 ◽  
Vol 50 (1) ◽  
pp. 510-511
Author(s):  
Amy M. McGough ◽  
Robert Josephs
Keyword(s):  
Electron Microscopy ◽  
Elastic Properties ◽  
Conformational Changes ◽  
Quaternary Structure ◽  
Three Dimensional ◽  
Membrane Skeleton ◽  
Projection Algorithm ◽  
Structural Basis ◽  
Iterative Approximation ◽  
Membrane Skeletons

The remarkable deformability of the erythrocyte derives in large part from the elastic properties of spectrin, the major component of the membrane skeleton. It is generally accepted that spectrin's elasticity arises from marked conformational changes which include variations in its overall length (1). In this work the structure of spectrin in partially expanded membrane skeletons was studied by electron microscopy to determine the molecular basis for spectrin's elastic properties. Spectrin molecules were analysed with respect to three features: length, conformation, and quaternary structure. The results of these studies lead to a model of how spectrin mediates the elastic deformation of the erythrocyte.Membrane skeletons were isolated from erythrocyte membrane ghosts, negatively stained, and examined by transmission electron microscopy (2). Particle lengths and end-to-end distances were measured from enlarged prints using the computer program MACMEASURE. Spectrin conformation (straightness) was assessed by calculating the particles’ correlation length by iterative approximation (3). Digitised spectrin images were correlation averaged or Fourier filtered to improve their signal-to-noise ratios. Three-dimensional reconstructions were performed using a suite of programs which were based on the filtered back-projection algorithm and executed on a cluster of Microvax 3200 workstations (4).

scholarly journals Behavioral Parameters of Planarians (Girardia tigrina) as Fast Screening, Integrative and Cumulative Biomarkers of Environmental Contamination: Preliminary Results

Water ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 1077
Author(s):  
Ana M. Córdova López ◽  
Althiéris de Souza Saraiva ◽  
Carlos Gravato ◽  
Amadeu M. V. M. Soares ◽  
Renato Almeida Sarmento
Keyword(s):  
Water Samples ◽  
Feeding Rate ◽  
Anthropogenic Activities ◽  
Behavioral Responses ◽  
Freshwater Ecosystems ◽  
Sampling Point ◽  
Total Chloride ◽  
Fast Screening ◽  
Sampling Points ◽  
The Impact

The present study aims to use behavioral responses of the freshwater planarian Girardia tigrina to assess the impact of anthropogenic activities on the aquatic ecosystem of the watershed Araguaia-Tocantins (Tocantins, Brazil). Behavioral responses are integrative and cumulative tools that reflect changes in energy allocation in organisms. Thus, feeding rate and locomotion velocity (pLMV) were determined to assess the effects induced by the laboratory exposure of adult planarians to water samples collected in the region of Tocantins-Araguaia, identifying the sampling points affected by contaminants. Furthermore, physicochemical and microbiological parameters, as well as the presence of inorganic compounds (dissolved aluminum, total barium, total chloride, dissolved iron, total fluoride, total manganese, nitrates, nitric nitrogen, total sulfate, total zinc) and surfactants, were determined on each specific sampling point. The behavioral biomarkers (feeding rate and pLMV) of the freshwater planarians were significantly decreased when organisms were exposed to water samples from four municipalities (Formoso do Araguaia, Lagoa da Confusão, Gurupi and Porto Nacional), sites of the Tocantins-Araguaia hydrographic region—TAHR. Both behavioral biomarkers decreased up to ~37–39% compared to organisms in ASTM medium only. Our results showed that these behavioral biomarkers can be used for fast screening monitoring of environmental samples of freshwater ecosystems, since a decrease in feeding rate and locomotor activity was observed in sites impacted by anthropogenic activities. However, the absence of effects observed in some sampling points does not represent the absence of contamination, since several other classes of contaminants were not determined. In these negative results, the absence of deleterious effects on behavioral biomarkers might only be indicative that the potential presence of contaminants on such sites does not significantly affect the performance of planarians. This fast screening approach seems to be useful to determine contaminated sites in freshwater ecosystems for biomonitoring purposes. This knowledge will help to develop biomonitoring programs and to decide appropriate sampling sites and analysis.

scholarly journals A Kriging-Assisted Multi-Objective Constrained Global Optimization Method for Expensive Black-Box Functions

Mathematics ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 149
Author(s):  
Yaohui Li ◽  
Jingfang Shen ◽  
Ziliang Cai ◽  
Yizhong Wu ◽  
Shuting Wang
Keyword(s):  
Global Optimization ◽  
Pareto Frontier ◽  
Kriging Model ◽  
Optimization Method ◽  
Function Evaluation ◽  
Sampling Point ◽  
Constrained Global Optimization ◽  
Multi Objective ◽  
Sample Data ◽  
Sampling Points

The kriging optimization method that can only obtain one sampling point per cycle has encountered a bottleneck in practical engineering applications. How to find a suitable optimization method to generate multiple sampling points at a time while improving the accuracy of convergence and reducing the number of expensive evaluations has been a wide concern. For this reason, a kriging-assisted multi-objective constrained global optimization (KMCGO) method has been proposed. The sample data obtained from the expensive function evaluation is first used to construct or update the kriging model in each cycle. Then, kriging-based estimated target, RMSE (root mean square error), and feasibility probability are used to form three objectives, which are optimized to generate the Pareto frontier set through multi-objective optimization. Finally, the sample data from the Pareto frontier set is further screened to obtain more promising and valuable sampling points. The test results of five benchmark functions, four design problems, and a fuel economy simulation optimization prove the effectiveness of the proposed algorithm.

scholarly journals Micro-CT data of early physiological cancellous bone formation in the lumbar spine of female C57BL/6 mice

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Michael Zenzes ◽  
Paul Zaslansky
Keyword(s):  
Cancellous Bone ◽  
Structural Changes ◽  
Bone Growth ◽  
Post Partum ◽  
Three Dimensional ◽  
Lumbar Vertebra ◽  
Tissue Growth ◽  
Micro Ct ◽  
Mineral Density ◽  
Ct Data

AbstractMicro-CT provides critical data for musculoskeletal research, yielding three-dimensional datasets containing distributions of mineral density. Using high-resolution scans, we quantified changes in the fine architecture of bone in the spine of young mice. This data is made available as a reference to physiological cancellous bone growth. The scans (n = 19) depict the extensive structural changes typical for female C57BL/6 mice pups, aged 1-, 3-, 7-, 10- and 14-days post-partum, as they attain the mature geometry. We reveal the micro-morphology down to individual trabeculae in the spine that follow phases of mineral-tissue rearrangement in the growing lumbar vertebra on a micrometer length scale. Phantom data is provided to facilitate mineral density calibration. Conventional histomorphometry matched with our micro-CT data on selected samples confirms the validity and accuracy of our 3D scans. The data may thus serve as a reference for modeling normal bone growth and can be used to benchmark other experiments assessing the effects of biomaterials, tissue growth, healing, and regeneration.

Accuracy of Patient-Specific 3D Printed Drill Guides in the Placement of a Canine Coxofemoral Toggle Pin through a Minimally Invasive Approach

2020 ◽  
Author(s):  
Brett G. Darrow ◽  
Kyle A. Snowdon ◽  
Adrien Hespel
Keyword(s):  
Minimally Invasive ◽  
Three Dimensional ◽  
Bone Tunnel ◽  
Patient Specific ◽  
Exit Point ◽  
Minimally Invasive Approach ◽  
Invasive Approach ◽  
Post Procedure ◽  
Drill Guide ◽  
Ct Data

Abstract Objective The aim of this study was to evaluate the accuracy of patient-specific three-dimensional printed drill guides (3D-PDG) for the placement of a coxofemoral toggle via a minimally invasive approach. Materials and Methods Pre-procedure computed tomography (CT) data of 19 canine cadaveric hips were used to design a cadaver-specific 3D-PDG that conformed to the proximal femur. Femoral and acetabular bone tunnels were drilled through the 3D-PDG, and a coxofemoral toggle pin was placed. The accuracy of tunnel placement was evaluated with post-procedure CT and gross dissection. Results Coxofemoral toggle pins were successfully placed in all dogs. Mean exit point translation at the fovea capitis was 2.5 mm (0.2–7.5) when comparing pre- and post-procedure CT scans. Gross dissection revealed the bone tunnel exited the fovea capitis inside (3/19), partially inside (12/19) and outside of (4/19) the ligament of the head of the femur. Placement of the bone tunnel through the acetabulum was inside (16/19), partially inside (1/19) and outside (2/19) of the acetabular fossa. Small 1 to 2 mm articular cartilage fragments were noted in 10 of 19 specimens. Clinical Significance Three-dimensional printed drill guide designed for coxofemoral toggle pin application is feasible. Errors are attributed to surgical execution and identification of the borders of the fovea capitis on CT data. Future studies should investigate modifications to 3D-PDG design and methods. Three-dimensional printed drill guide for coxofemoral toggle pin placement warrants consideration for use in select clinical cases of traumatic coxofemoral luxation.

Considerations for Post-processing Parameters in Mixed-Method 3D Analyses

2021 ◽  
Vol 9 (4) ◽  
pp. 325-337
Author(s):  
Robert Z. Selden ◽  
Lauren N. Butaric ◽  
Kersten Bergstrom ◽  
Dennis Van Gerven
Keyword(s):  
Three Dimensional ◽  
Processing Parameters ◽  
Surface Model ◽  
Digital Repositories ◽  
Computed Tomographic ◽  
Archaeological Data ◽  
3D Data ◽  
Morphometric Analyses ◽  
Smoothing Parameters ◽  
Ct Data

ABSTRACTThe production of three-dimensional (3D) digital meshes of surface and computed tomographic (CT) data has become widespread in morphometric analyses of anthropological and archaeological data. Given that processing methods are not standardized, this leaves questions regarding the comparability of processed and digitally curated 3D datasets. The goal of this study was to identify those processing parameters that result in the most consistent fit between CT-derived meshes and a 3D surface model of the same human mandible. Eight meshes, each using unique thresholding and smoothing parameters, were compared to assess whole-object deviations, deviations along curves, and deviations between specific anatomical features on the surface model when compared with the CT scans using a suite of comparison points. Based on calculated gap distances, the mesh that thresholded at “0” with an applied smoothing technique was found to deviate least from the surface model, although it is not the most biologically accurate. Results have implications for aggregated studies that employ multimodal 3D datasets, and caution is recommended for studies that enlist 3D data from websites and digital repositories, particularly if processing parameters are unknown or derived for studies with different research foci.

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