scholarly journals Data Mining and Analysis of the Compatibility Law of Traditional Chinese Medicines Based on FP-Growth Algorithm

2021 ◽  
Vol 2021 ◽  
pp. 1-10
Author(s):  
Shuchun Zhou
Keyword(s):  
Chinese Medicine ◽  
Traditional Chinese Medicine ◽  
Association Rules ◽  
Large Scale ◽  
Data Sets ◽  
Prescription Data ◽  
Exploratory Research ◽  
Data Set ◽  
Important Processing ◽  
Tcm Theory

The compatibility law of prescriptions is the core link of TCM theory of “theory, method, prescription and medicine,” which is of great significance for guiding clinical practice, new drug development and revealing the scientific connotation of TCM theory, and is also one of the hot spots and difficulties of TCM modernization research. How to efficiently analyze the frequency of drug use, core combination, and association rules between drugs in prescription is a basic core problem in the study of prescription compatibility law. In this paper, a systematic study was made on the compatibility rules of traditional Chinese antiviral classical prescriptions and the mechanism of traditional Chinese medicine molecules. FP-growth algorithm was used to analyze association rules of 961 classical prescriptions collected and to explore the compatibility rules of traditional Chinese antiviral classical prescriptions. In terms of compatibility law of traditional Chinese antiviral prescriptions, this paper studied the compatibility law of traditional Chinese antiviral prescriptions based on the FP-growth algorithm and made exploratory research on the compatibility law information of 961 traditional classical antiviral prescriptions. Firstly, FP tree was constructed based on the classic recipe data set. Then, frequent item set rules were established, and association rules contained in FP tree were extracted. Finally, the frequency and association rules of antiviral TCM prescriptions were analyzed according to dosage forms (decoction, pill, paste, and ingot). The results show that the FP-growth algorithm adopted in this paper has excellent algorithm performance and strong generalization and robustness in the screening and mining of large-scale prescription data sets, which can provide important processing tools and technical methods for the study of the compatibility rule of traditional Chinese medicine prescriptions.

scholarly journals Detection of Herb-Symptom Associations from Traditional Chinese Medicine Clinical Data

2015 ◽  
Vol 2015 ◽  
pp. 1-11 ◽  
Author(s):  
Yu-Bing Li ◽  
Xue-Zhong Zhou ◽  
Run-Shun Zhang ◽  
Ying-Hui Wang ◽  
Yonghong Peng ◽  
...  
Keyword(s):  
Chinese Medicine ◽  
Traditional Chinese Medicine ◽  
Clinical Data ◽  
Multiple Testing ◽  
Large Scale ◽  
Individualized Medicine ◽  
Correlation Method ◽  
Data Sets ◽  
Chi Square ◽  
Positive Correlations

Background. Traditional Chinese medicine (TCM) is an individualized medicine by observing the symptoms and signs (symptoms in brief) of patients. We aim to extract the meaningful herb-symptom relationships from large scale TCM clinical data.Methods. To investigate the correlations between symptoms and herbs held for patients, we use four clinical data sets collected from TCM outpatient clinical settings and calculate the similarities between patient pairs in terms of the herb constituents of their prescriptions and their manifesting symptoms by cosine measure. To address the large-scale multiple testing problems for the detection of herb-symptom associations and the dependence between herbs involving similar efficacies, we propose a network-based correlation analysis (NetCorrA) method to detect the herb-symptom associations.Results. The results show that there are strong positive correlations between symptom similarity and herb similarity, which indicates that herb-symptom correspondence is a clinical principle adhered to by most TCM physicians. Furthermore, the NetCorrA method obtains meaningful herb-symptom associations and performs better than the chi-square correlation method by filtering the false positive associations.Conclusions. Symptoms play significant roles for the prescriptions of herb treatment. The herb-symptom correspondence principle indicates that clinical phenotypic targets (i.e., symptoms) of herbs exist and would be valuable for further investigations.

scholarly journals Calling for improved quality in the registration of traditional Chinese medicine during the public health emergency: a survey of trial registries for COVID-19, H1N1, and SARS

Trials ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Zhuoran Kuang ◽  
◽  
Xiaoyan Li ◽  
Jianxiong Cai ◽  
Yaolong Chen ◽  
...  
Keyword(s):  
Clinical Trial ◽  
Clinical Trials ◽  
Chinese Medicine ◽  
Traditional Chinese Medicine ◽  
Secondary Outcome ◽  
Specific Information ◽  
Clinical Trial Registry ◽  
Data Set ◽  
Diagnosis Criteria

Abstract Objective To assess the registration quality of traditional Chinese medicine (TCM) clinical trials for COVID-19, H1N1, and SARS. Method We searched for clinical trial registrations of TCM in the WHO International Clinical Trials Registry Platform (ICTRP) and Chinese Clinical Trial Registry (ChiCTR) on April 30, 2020. The registration quality assessment is based on the WHO Trial Registration Data Set (Version 1.3.1) and extra items for TCM information, including TCM background, theoretical origin, specific diagnosis criteria, description of intervention, and outcomes. Results A total of 136 records were examined, including 129 severe acute respiratory syndrome coronavirus 2 (COVID-19) and 7 H1N1 influenza (H1N1) patients. The deficiencies in the registration of TCM clinical trials (CTs) mainly focus on a low percentage reporting detailed information about interventions (46.6%), primary outcome(s) (37.7%), and key secondary outcome(s) (18.4%) and a lack of summary result (0%). For the TCM items, none of the clinical trial registrations reported the TCM background and rationale; only 6.6% provided the TCM diagnosis criteria or a description of the TCM intervention; and 27.9% provided TCM outcome(s). Conclusion Overall, although the number of registrations of TCM CTs increased, the registration quality was low. The registration quality of TCM CTs should be improved by more detailed reporting of interventions and outcomes, TCM-specific information, and sharing of the result data.

scholarly journals Galaxy spin direction distribution in HST and SDSS show similar large-scale asymmetry

2020 ◽  
Vol 37 ◽  
Author(s):  
Lior Shamir
Keyword(s):  
Large Scale ◽  
Spiral Galaxies ◽  
Hubble Space Telescope ◽  
Gravitational Interaction ◽  
Large Data ◽  
Sloan Digital Sky Survey ◽  
Data Sets ◽  
Dipole Axis ◽  
Data Set ◽  
The Asymmetry

Abstract Several recent observations using large data sets of galaxies showed non-random distribution of the spin directions of spiral galaxies, even when the galaxies are too far from each other to have gravitational interaction. Here, a data set of $\sim8.7\cdot10^3$ spiral galaxies imaged by Hubble Space Telescope (HST) is used to test and profile a possible asymmetry between galaxy spin directions. The asymmetry between galaxies with opposite spin directions is compared to the asymmetry of galaxies from the Sloan Digital Sky Survey. The two data sets contain different galaxies at different redshift ranges, and each data set was annotated using a different annotation method. The results show that both data sets show a similar asymmetry in the COSMOS field, which is covered by both telescopes. Fitting the asymmetry of the galaxies to cosine dependence shows a dipole axis with probabilities of $\sim2.8\sigma$ and $\sim7.38\sigma$ in HST and SDSS, respectively. The most likely dipole axis identified in the HST galaxies is at $(\alpha=78^{\rm o},\delta=47^{\rm o})$ and is well within the $1\sigma$ error range compared to the location of the most likely dipole axis in the SDSS galaxies with $z>0.15$ , identified at $(\alpha=71^{\rm o},\delta=61^{\rm o})$ .

scholarly journals The Midlatitude Continental Convective Clouds Experiment (MC3E) sounding network: operations, processing and analysis

2015 ◽  
Vol 8 (1) ◽  
pp. 421-434 ◽  
Author(s):  
M. P. Jensen ◽  
T. Toto ◽  
D. Troyan ◽  
P. E. Ciesielski ◽  
D. Holdridge ◽  
...  
Keyword(s):  
Large Scale ◽  
Scale Model ◽  
Data Sets ◽  
Central Plains ◽  
Data Set ◽  
Convective Systems ◽  
Convective Clouds ◽  
Quality Checks ◽  
Network Operations ◽  
The Impact

Abstract. The Midlatitude Continental Convective Clouds Experiment (MC3E) took place during the spring of 2011 centered in north-central Oklahoma, USA. The main goal of this field campaign was to capture the dynamical and microphysical characteristics of precipitating convective systems in the US Central Plains. A major component of the campaign was a six-site radiosonde array designed to capture the large-scale variability of the atmospheric state with the intent of deriving model forcing data sets. Over the course of the 46-day MC3E campaign, a total of 1362 radiosondes were launched from the enhanced sonde network. This manuscript provides details on the instrumentation used as part of the sounding array, the data processing activities including quality checks and humidity bias corrections and an analysis of the impacts of bias correction and algorithm assumptions on the determination of convective levels and indices. It is found that corrections for known radiosonde humidity biases and assumptions regarding the characteristics of the surface convective parcel result in significant differences in the derived values of convective levels and indices in many soundings. In addition, the impact of including the humidity corrections and quality controls on the thermodynamic profiles that are used in the derivation of a large-scale model forcing data set are investigated. The results show a significant impact on the derived large-scale vertical velocity field illustrating the importance of addressing these humidity biases.

scholarly journals An Associate Rules Mining Algorithm Based on Artificial Immune Network for SAR Image Segmentation

2015 ◽  
Vol 2015 ◽  
pp. 1-14
Author(s):  
Mengling Zhao ◽  
Hongwei Liu
Keyword(s):  
Association Rules ◽  
Large Scale ◽  
Classification Algorithm ◽  
Data Sets ◽  
Immune Network ◽  
Artificial Immune ◽  
Mining Algorithm ◽  
Sar Image Segmentation ◽  
Artificial Immune Network ◽  
Adaptive Pso

As a computational intelligence method, artificial immune network (AIN) algorithm has been widely applied to pattern recognition and data classification. In the existing artificial immune network algorithms, the calculating affinity for classifying is based on calculating a certain distance, which may lead to some unsatisfactory results in dealing with data with nominal attributes. To overcome the shortcoming, the association rules are introduced into AIN algorithm, and we propose a new classification algorithm an associate rules mining algorithm based on artificial immune network (ARM-AIN). The new method uses the association rules to represent immune cells and mine the best association rules rather than searching optimal clustering centers. The proposed algorithm has been extensively compared with artificial immune network classification (AINC) algorithm, artificial immune network classification algorithm based on self-adaptive PSO (SPSO-AINC), and PSO-AINC over several large-scale data sets, target recognition of remote sensing image, and segmentation of three different SAR images. The result of experiment indicates the superiority of ARM-AIN in classification accuracy and running time.

scholarly journals Utilization Pattern of Traditional Chinese Medicine among Fracture Patients: A Taiwan Hospital-Based Cross-Sectional Study

2018 ◽  
Vol 2018 ◽  
pp. 1-9 ◽  
Author(s):  
Chu-Yao Tseng ◽  
Ching-Wen Huang ◽  
Hsin-Chia Huang ◽  
Wei-Chen Tseng
Keyword(s):  
Chinese Medicine ◽  
Traditional Chinese Medicine ◽  
Early Period ◽  
Clinic Visit ◽  
Research Database ◽  
Late Period ◽  
Utilization Pattern ◽  
Cross Sectional ◽  
Herbal Products ◽  
Tcm Theory

Traditional Chinese medicine (TCM) divides fracture treatment into three stages. Many TCM herbs and formulas have been used to treat fractures for thousands of years. However, research regarding the Chinese herbal products (CHPs) that should be used at different periods of treatment is still lacking. This study aims to identify the CHPs that should be used at different periods of treatment as well as confirm the TCM theory of fracture periods medicine. We used prescriptions of TCM outpatients with fracture diagnoses analyzed using the Chang Gung Research Database (CGRD) from 2000 to 2015. According to the number of days between the date of the fracture and the clinic visit date, all patients were assigned to one of three groups. Patients with a date gap of 0-13 days were assigned to the early period group; those with a date gap of 14-82 days were assigned to the middle period group; and those with a date gap of 83-182 days were assigned to the late period group. We observed the average number of herbal formulas prescribed by the TCM doctor at each visit was 2.78, and the average number of single herbs prescribed was 6.47. The top three prescriptions in the early fracture period were Zheng-gu-zi-jin-dang, Shu-jing-huo-xue-tang, and Wu-ling-san. In the middle fracture period, the top three formulas were Zheng-gu-zi-jin-dang, Shu-jing-huo-xue-tang, and Zhi-bai-di-huang-wan. In the late fracture period, the top three formulas were Shu-jing-huo-xue-tang, Gui-lu-er-xian-jiao, and Du-huo-ji-sheng-tang. The main single herbs used in the early fracture period were Yan-hu-suo, Gu-sui-bu, and Dan-shen. From the middle to the late period, the most prescribed single herbs were Xu-duan, Gu-sui-bu, and Yan-hu-suo. We concluded that the results showed that the CGRD utilization pattern roughly meets the TCM theory at different fracture periods.

scholarly journals A fast methodology for large-scale focusing inversion of gravity and magnetic data using the structured model matrix and the 2-D fast Fourier transform

2020 ◽  
Vol 223 (2) ◽  
pp. 1378-1397
Author(s):  
Rosemary A Renaut ◽  
Jarom D Hogue ◽  
Saeed Vatankhah ◽  
Shuang Liu
Keyword(s):  
Fourier Transform ◽  
Fast Fourier Transform ◽  
Linear Systems ◽  
Large Scale ◽  
Surface Measurement ◽  
Magnetic Data ◽  
Uniform Grid ◽  
Data Sets ◽  
Inversion Algorithm ◽  
Data Set

SUMMARY We discuss the focusing inversion of potential field data for the recovery of sparse subsurface structures from surface measurement data on a uniform grid. For the uniform grid, the model sensitivity matrices have a block Toeplitz Toeplitz block structure for each block of columns related to a fixed depth layer of the subsurface. Then, all forward operations with the sensitivity matrix, or its transpose, are performed using the 2-D fast Fourier transform. Simulations are provided to show that the implementation of the focusing inversion algorithm using the fast Fourier transform is efficient, and that the algorithm can be realized on standard desktop computers with sufficient memory for storage of volumes up to size n ≈ 106. The linear systems of equations arising in the focusing inversion algorithm are solved using either Golub–Kahan bidiagonalization or randomized singular value decomposition algorithms. These two algorithms are contrasted for their efficiency when used to solve large-scale problems with respect to the sizes of the projected subspaces adopted for the solutions of the linear systems. The results confirm earlier studies that the randomized algorithms are to be preferred for the inversion of gravity data, and for data sets of size m it is sufficient to use projected spaces of size approximately m/8. For the inversion of magnetic data sets, we show that it is more efficient to use the Golub–Kahan bidiagonalization, and that it is again sufficient to use projected spaces of size approximately m/8. Simulations support the presented conclusions and are verified for the inversion of a magnetic data set obtained over the Wuskwatim Lake region in Manitoba, Canada.

scholarly journals Six years of total ozone column measurements from SCIAMACHY nadir observations

2009 ◽  
Vol 2 (1) ◽  
pp. 87-98 ◽  
Author(s):  
C. Lerot ◽  
M. Van Roozendael ◽  
J. van Geffen ◽  
J. van Gent ◽  
C. Fayt ◽  
...  
Keyword(s):  
Cross Sections ◽  
Total Ozone ◽  
Large Scale ◽  
European Space Agency ◽  
Data Sets ◽  
Data Set ◽  
Ozone Data ◽  
Space Agency ◽  
German Aerospace ◽  
The Impact

Abstract. Total O3 columns have been retrieved from six years of SCIAMACHY nadir UV radiance measurements using SDOAS, an adaptation of the GDOAS algorithm previously developed at BIRA-IASB for the GOME instrument. GDOAS and SDOAS have been implemented by the German Aerospace Center (DLR) in the version 4 of the GOME Data Processor (GDP) and in version 3 of the SCIAMACHY Ground Processor (SGP), respectively. The processors are being run at the DLR processing centre on behalf of the European Space Agency (ESA). We first focus on the description of the SDOAS algorithm with particular attention to the impact of uncertainties on the reference O3 absorption cross-sections. Second, the resulting SCIAMACHY total ozone data set is globally evaluated through large-scale comparisons with results from GOME and OMI as well as with ground-based correlative measurements. The various total ozone data sets are found to agree within 2% on average. However, a negative trend of 0.2–0.4%/year has been identified in the SCIAMACHY O3 columns; this probably originates from instrumental degradation effects that have not yet been fully characterized.

scholarly journals Collecting public RGB-D datasets for human daily activity recognition

2017 ◽  
Vol 14 (4) ◽  
pp. 172988141770907 ◽  
Author(s):  
Hanbo Wu ◽  
Xin Ma ◽  
Zhimeng Zhang ◽  
Haibo Wang ◽  
Yibin Li
Keyword(s):  
Activity Recognition ◽  
Daily Activity ◽  
Visual Cues ◽  
Large Scale ◽  
Hot Spot ◽  
Feature Representation ◽  
Data Sets ◽  
Activity Data ◽  
Data Set ◽  
Depth Motion Maps

Human daily activity recognition has been a hot spot in the field of computer vision for many decades. Despite best efforts, activity recognition in naturally uncontrolled settings remains a challenging problem. Recently, by being able to perceive depth and visual cues simultaneously, RGB-D cameras greatly boost the performance of activity recognition. However, due to some practical difficulties, the publicly available RGB-D data sets are not sufficiently large for benchmarking when considering the diversity of their activities, subjects, and background. This severely affects the applicability of complicated learning-based recognition approaches. To address the issue, this article provides a large-scale RGB-D activity data set by merging five public RGB-D data sets that differ from each other on many aspects such as length of actions, nationality of subjects, or camera angles. This data set comprises 4528 samples depicting 7 action categories (up to 46 subcategories) performed by 74 subjects. To verify the challengeness of the data set, three feature representation methods are evaluated, which are depth motion maps, spatiotemporal depth cuboid similarity feature, and curvature space scale. Results show that the merged large-scale data set is more realistic and challenging and therefore more suitable for benchmarking.

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