scholarly journals Decentralized Competition Produces Nonlinear Dynamics Akin to Klinotaxis

Complexity ◽  
2018 ◽  
Vol 2018 ◽  
pp. 1-8 ◽  
Author(s):  
Pedro Manrique ◽  
Mason Klein ◽  
Yao Sheng Li ◽  
Chen Xu ◽  
Pak Ming Hui ◽  
...  
Keyword(s):  
Sensory Input ◽  
Model Organism ◽  
The Body ◽  
System Model ◽  
Proportional Navigation ◽  
C Elegans ◽  
Decentralized Decision Making ◽  
Highly Nonlinear ◽  
Neural Logic ◽  
Nonlinear Behaviors

One of the biggest challenges in unravelling the complexity of living systems, is to fully understand the neural logic that translates sensory input into the highly nonlinear motor outputs that are observed when simple organisms crawl. Recent work has shown that organisms such as larvae that exhibit klinotaxis (i.e., orientation through lateral movements of portions of the body) can perform normal exploratory practices even in the absence of a brain. Abdominal and thoracic networks control the alternation between crawls and turns. This motivates the search for decentralized models of movement that can produce nonlinear outputs that resemble the experiments. Here, we present such a complex system model, in the form of a population of decentralized decision-making components (agents) whose aggregate activity resembles that observed in klinotaxis organisms. Despite the simplicity of each component, the complexity created by their collective feedback of information and actions akin to proportional navigation, drives the model organism towards a specific target. Our model organism’s nonlinear behaviors are consistent with empirically observed reorientation rate measures for Drosophila larvae as well as nematode C. elegans.

scholarly journals Cholinergic signalling at the body wall neuromuscular junction couples to distal inhibition of feeding in C. elegans

2021 ◽  
Author(s):  
Patricia G. Izquierdo ◽  
Thibana Thisainathan ◽  
James H. Atkins ◽  
Christian J. Lewis ◽  
John E.H. Tattersall ◽  
...  
Keyword(s):  
Body Wall ◽  
Neuromuscular Junctions ◽  
Model Organism ◽  
Inhibitory Effect ◽  
The Body ◽  
Body Wall Muscle ◽  
Cholinergic Transmission ◽  
Systematic Screening ◽  
C Elegans ◽  
Pharyngeal Pumping

AbstractComplex biological functions within organisms are frequently orchestrated by systemic communication between tissues. In the model organism C. elegans, the pharyngeal and body wall neuromuscular junctions are two discrete structures that control feeding and locomotion, respectively. These distinct tissues are controlled by separate, well-defined neural circuits. Nonetheless, the emergent behaviours, feeding and locomotion, are coordinated to guarantee the efficiency of food intake. We show that pharmacological hyperactivation of cholinergic transmission at the body wall muscle reduces the rate of pumping behaviour. This was evidenced by a systematic screening of the cholinesterase inhibitor aldicarb’s effect on the rate of pharyngeal pumping on food in mutant worms. The screening revealed that the key determinant of the inhibitory effect of aldicarb on pharyngeal pumping is the L-type nicotinic acetylcholine receptor expressed in body wall muscle. This idea was reinforced by the observation that selective hyperstimulation of the body wall muscle L-type receptor by the agonist levamisole inhibited pumping. Overall, our results reveal that body wall cholinergic transmission controls locomotion and simultaneously couples a distal inhibition of feeding.

Assessment of lead toxicity on locomotion and growth in a nematode Caenorhabditis elegans

2020 ◽  
Vol 12 (1) ◽  
pp. 36-41
Author(s):  
Shashank Shekhar Tiwari ◽  
Francis Tambo ◽  
Rakhi Agarwal
Keyword(s):  
Caenorhabditis Elegans ◽  
Lead Exposure ◽  
Anthropogenic Activities ◽  
Model Organism ◽  
Lead Toxicity ◽  
Future Generation ◽  
Exposure Dose ◽  
The Body ◽  
Young Generation ◽  
C Elegans

Due to anthropogenic activities and natural abundance, lead exposure is a common phenomenon. Neurotoxic and genotoxic effects of lead are widely known. Recent studies have suggested that lead exposure can affect young generation and transfer to the progeny thus posing a great threat for future generation. The present study was focused on lead toxicity in terms of locomotion and growth of Caenorhabditis elegans (N2 wild type) at three sub-lethal doses (3µM, 15 µM and 30 µM) of Pb (NO3)2 for 24 hours (sub-chronic exposure). Caenorhabditis elegans is a nematode with an established eco- toxicity marker model organism, due to its short life cycle and ease to monitor. After lead  exposure, significant toxic manifestations were observed in locomotion of the nematode in terms of omega bends (+350% for 30 µM exposure dose, p<0.001), reversals (-26.98%, -49% and -66.35% for 3 µM, 15 µM and 30 µM exposure doses respectively, p<0.001), turn counts (-38.66%, -62.61% and -81.93% for 3 µM, 15 µM and 30 µM exposure doses respectively, p<0.001 ) and peristaltic speed alterations (+97.83%, +225.92% and +454.63% for 3 µM, 15 µM and 30 µM exposure doses respectively, p<0.001). Successive reduction in the body length at lower doses shows remarkable toxic alterations in nematodes. The obtained data may be useful to extrapolate the effects of lead exposure on humans, as many of the similar pathways and cellular processes affected by Pb in humans are also present in C. elegans.

scholarly journals Roll maneuvers are essential for active reorientation of Caenorhabditis elegans in 3D media

2018 ◽  
Vol 115 (16) ◽  
pp. E3616-E3625 ◽  
Author(s):  
Alejandro Bilbao ◽  
Amar K. Patel ◽  
Mizanur Rahman ◽  
Siva A. Vanapalli ◽  
Jerzy Blawzdziewicz
Keyword(s):  
Caenorhabditis Elegans ◽  
Symmetry Axis ◽  
Model Organism ◽  
The Body ◽  
Forward Motion ◽  
C Elegans ◽  
Viscous Forces ◽  
3D Space ◽  
Undulatory Locomotion ◽  
Nonzero Torsion

Locomotion of the nematode Caenorhabditis elegans is a key observable used in investigations ranging from behavior to neuroscience to aging. However, while the natural environment of this model organism is 3D, quantitative investigations of its locomotion have been mostly limited to 2D motion. Here, we present a quantitative analysis of how the nematode reorients itself in 3D media. We identify a unique behavioral state of C. elegans—a roll maneuver—which is an essential component of 3D locomotion in burrowing and swimming. The rolls, associated with nonzero torsion of the nematode body, result in rotation of the plane of dorsoventral body undulations about the symmetry axis of the trajectory. When combined with planar turns in a new undulation plane, the rolls allow the nematode to reorient its body in any direction, thus enabling complete exploration of 3D space. The rolls observed in swimming are much faster than the ones in burrowing; we show that this difference stems from a purely hydrodynamic enhancement mechanism and not from a gait change or an increase in the body torsion. This result demonstrates that hydrodynamic viscous forces can enhance 3D reorientation in undulatory locomotion, in contrast to known hydrodynamic hindrance of both forward motion and planar turns.

scholarly journals Tissue mechanics and somatosensory neural responses govern touch sensation inC. elegans

2018 ◽  
Author(s):  
A. Sanzeni ◽  
S. Katta ◽  
B.C. Petzold ◽  
B.L. Pruitt ◽  
M.B. Goodman ◽  
...  
Keyword(s):  
Model Organism ◽  
Quantitative Model ◽  
Tissue Mechanics ◽  
The Body ◽  
Elastic Model ◽  
Prime Model ◽  
Neural Responses ◽  
C Elegans ◽  
Somatosensory Neurons ◽  
Broad Variety

The sense of touch hinges on tissues transducing stimuli applied to the skin and somatosensory neurons converting mechanical inputs into currents. Like mammalian Pacinian corpuscles, the light-touch response of the prime model organismC. elegansadapts rapidly, and is symmetrically activated by the onset and offset of a step indentation. Here, we propose a quantitative model that combines transduction of stimuli across the skin and subsequent gating of mechanoelectrical channels. For mechanics, we use an elastic model based on geometrically-nonlinear deformations of a pressurized cylindrical shell. For gating, we build upon consequences of the dermal layer’s thinness and tangential stimuli. Our model demonstrates how the onset-offset symmetry arises from the coupling of mechanics and adaptation, and accounts for experimental neural responses to a broad variety of stimuli. Predicted effects of modifications in the mechanics or the internal pressure of the body are tested against mechanical and neurophysiological experiments.

Bayesian Spiking Neurons II: Learning

2008 ◽  
Vol 20 (1) ◽  
pp. 118-145 ◽  
Author(s):  
Sophie Deneve
Keyword(s):  
Information Transfer ◽  
Bayesian Learning ◽  
Sensory Input ◽  
Temporal Dynamics ◽  
Learning Rule ◽  
External World ◽  
The Body ◽  
Spiking Neurons ◽  
Spike Time ◽  
Highly Nonlinear

In the companion letter in this issue (“Bayesian Spiking Neurons I: Inference”), we showed that the dynamics of spiking neurons can be interpreted as a form of Bayesian integration, accumulating evidence over time about events in the external world or the body. We proceed to develop a theory of Bayesian learning in spiking neural networks, where the neurons learn to recognize temporal dynamics of their synaptic inputs. Meanwhile, successive layers of neurons learn hierarchical causal models for the sensory input. The corresponding learning rule is local, spike-time dependent, and highly nonlinear. This approach provides a principled description of spiking and plasticity rules maximizing information transfer, while limiting the number of costly spikes, between successive layers of neurons.

scholarly journals Experimental investigation using micro-PIV of the effect of microRNA-1 deficiency on motility in Caenorhabditis elegans

2020 ◽  
Author(s):  
S. Ravikumar ◽  
M. Fedrizzi ◽  
R. Prabhakar ◽  
R. Pocock ◽  
M. K. O’Bryan ◽  
...  
Keyword(s):  
Caenorhabditis Elegans ◽  
Swimming Speed ◽  
Model Organism ◽  
The Body ◽  
Wild Type ◽  
Mean Power ◽  
C Elegans ◽  
Micro Piv ◽  
Image Velocimetry ◽  
Beating Frequency

AbstractCaenorhabditis elegans is a microscopic nematode used extensively as a model organism in studies of neuromuscular function and neurodegenerative disorders. A mutation in mir-1 affects signalling at the neuromuscular junction. We investigate the effect of this mutation on the propulsive power exerted by nematodes as they grow in size with age. We compare the motility of wild-type and mir-1(gk276) mutant nematodes in a Newtonian fluid using a two-component, two dimensional (2C-2D) Digital Microscopic Particle Image Velocimetry (µ-PIV) technique. Beating amplitudes of the head and tail, the wavelength of undulatory waves and the swimming speed scale linearly with size in both the wild-type and mutant strains. The beating frequency is independent of size or position along the body. Differences in the magnitudes of these kinematic parameters between the two strains, however, grow systematically with age. The swimming speed scales linearly with the wave speed of the neuromuscular undulation in both nematode strains with a conserved ratio. The magnitude of mean power and mean local fluid circulation in the mutant is significantly lower compared to those of the wild-type animals of the same age. This indicates that a mutation in mir-1 adversely affects motility in C. elegans.

scholarly journals Comparative Transcriptomics of heads and tails between Steinernema carpocapsae and Caenorhabditis elegans

2020 ◽  
Author(s):  
Isaryhia Maya Rodriguez ◽  
Lorrayne Serra Clague ◽  
Cassandra Joan McGill ◽  
Bryan Rodriguez ◽  
Ali Mortazavi
Keyword(s):  
Gene Expression ◽  
Caenorhabditis Elegans ◽  
Neuronal Development ◽  
Model Organism ◽  
The Body ◽  
Steinernema Carpocapsae ◽  
Specific Gene ◽  
Body Parts ◽  
C Elegans

AbstractSteinernema nematodes have been widely studied for insect infection and mutualism, but little is known about the patterns of gene expression along the body of these worms or how these compare to the model organism Caenorhabditis elegans. Here we perform the first comparative analysis between the heads and tail regions of Steinernema carpocapsae and C. elegans Infective Juveniles (IJs)/dauers and young adults using single-worm RNA-seq. While we find overall agreement in gene expression there were several sets of genes with substantial differences between the two species. Gene expression in the S. carpocapsae female compared to the C. elegans hermaphrodite heads and tails revealed differences in metabolism, aging, and determination of lifespan. Young adult male heads and tails showed major differences in developmental related processes such as morphogenesis as well as neuronal development and signaling. We also found head- and tail-specific gene expression differences between S. carpocapsae IJs and C. elegans dauers for genes related to growth and development as well as neuronal signaling and activity. This study is one of the first comparative transcriptomic analyses of body parts between distantly related species of nematodes and provides insight into both the highly conserved and genetically distinctive characteristics of both species.

scholarly journals Health and longevity studies in C. elegans: the “healthy worm database” reveals strengths, weaknesses and gaps of test compound-based studies

2021 ◽  
Vol 22 (2) ◽  
pp. 215-236
Author(s):  
Nadine Saul ◽  
Steffen Möller ◽  
Francesca Cirulli ◽  
Alessandra Berry ◽  
Walter Luyten ◽  
...  
Keyword(s):  
Healthy Aging ◽  
Model Organism ◽  
Research Field ◽  
Aging Research ◽  
Genetic Manipulations ◽  
C Elegans ◽  
Starting Point ◽  
Health Related ◽  
Phenotype Measurement ◽  
Or Gene

AbstractSeveral biogerontology databases exist that focus on genetic or gene expression data linked to health as well as survival, subsequent to compound treatments or genetic manipulations in animal models. However, none of these has yet collected experimental results of compound-related health changes. Since quality of life is often regarded as more valuable than length of life, we aim to fill this gap with the “Healthy Worm Database” (http://healthy-worm-database.eu). Literature describing health-related compound studies in the aging model Caenorhabditis elegans was screened, and data for 440 compounds collected. The database considers 189 publications describing 89 different phenotypes measured in 2995 different conditions. Besides enabling a targeted search for promising compounds for further investigations, this database also offers insights into the research field of studies on healthy aging based on a frequently used model organism. Some weaknesses of C. elegans-based aging studies, like underrepresented phenotypes, especially concerning cognitive functions, as well as the convenience-based use of young worms as the starting point for compound treatment or phenotype measurement are discussed. In conclusion, the database provides an anchor for the search for compounds affecting health, with a link to public databases, and it further highlights some potential shortcomings in current aging research.

Benefits of Using the Invertebrate Model Organism C. Elegans in an Inquiry-Based Laboratory Activity

2021 ◽  
pp. 009862832110296
Author(s):  
Angy J. Kallarackal
Keyword(s):  
American Psychological Association ◽  
Model Organism ◽  
Learning Goals ◽  
Research Skills ◽  
Final Exam ◽  
Laboratory Activity ◽  
Writing Ability ◽  
C Elegans ◽  
Invertebrate Model ◽  
Laboratory Experiences

Background: The goals of laboratory experiences include developing knowledge base, research skills, and scientific communication abilities. Objective: The aim was to assess an inquiry-based laboratory activity using the model organism Caenorhabditis elegans in relation to learning goals. Method: Students in a Biopsychology laboratory course worked in groups to test the effect of various drugs (e.g., nicotine, ethanol, fluoxetine, and melatonin) on C. elegans behavior. The activity included literature review, experimental design, and a final lab report. A cumulative final exam included a synaptic communication question related to the content of the activity. Results: Students showed better retention of laboratory-related content compared to other topics from the course, as demonstrated through performance on the final exam and were able to replicate previous research demonstrating effects of drug on locomotion. However, students did not improve writing ability compared to performance on a previous American Psychological Association style lab report. Conclusion: This study demonstrates that using a student-designed, multi-week laboratory assignment in an undergraduate Biopsychology course supports the growth of psychology knowledge and the development of research skills. Teaching Implications: Instructors should consider using the described laboratory activity for biopsychology or behavioral neuroscience classes or consider similarly designed laboratory formats for other courses in Psychology.

scholarly journals Mutations Affecting Nerve Attachment of Caenorhabditis elegans

Genetics ◽  
2001 ◽  
Vol 157 (4) ◽  
pp. 1611-1622 ◽  
Author(s):  
Go Shioi ◽  
Michinari Shoji ◽  
Masashi Nakamura ◽  
Takeshi Ishihara ◽  
Isao Katsura ◽  
...  
Keyword(s):  
Caenorhabditis Elegans ◽  
Nerve Cord ◽  
Ventral Nerve Cord ◽  
Body Wall ◽  
The Body ◽  
Genetic Loci ◽  
Muscle Attachment ◽  
C Elegans ◽  
Ventral Cord ◽  
Excretory Canal

Abstract Using a pan-neuronal GFP marker, a morphological screen was performed to detect Caenorhabditis elegans larval lethal mutants with severely disorganized major nerve cords. We recovered and characterized 21 mutants that displayed displacement or detachment of the ventral nerve cord from the body wall (Ven: ventral cord abnormal). Six mutations defined three novel genetic loci: ven-1, ven-2, and ven-3. Fifteen mutations proved to be alleles of previously identified muscle attachment/positioning genes, mup-4, mua-1, mua-5, and mua-6. All the mutants also displayed muscle attachment/positioning defects characteristic of mua/mup mutants. The pan-neuronal GFP marker also revealed that mutants of other mua/mup loci, such as mup-1, mup-2, and mua-2, exhibited the Ven defect. The hypodermis, the excretory canal, and the gonad were morphologically abnormal in some of the mutants. The pleiotropic nature of the defects indicates that ven and mua/mup genes are required generally for the maintenance of attachment of tissues to the body wall in C. elegans.

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