scholarly journals Patterns with Equal Values in Permutation Entropy: Do They Really Matter for Biosignal Classification?

Complexity ◽  
2018 ◽  
Vol 2018 ◽  
pp. 1-15 ◽  
Author(s):  
David Cuesta–Frau ◽  
Manuel Varela–Entrecanales ◽  
Antonio Molina–Picó ◽  
Borja Vargas
Keyword(s):  
Body Temperature ◽  
Sensitivity And Specificity ◽  
Scientific Literature ◽  
Statistical Significance ◽  
Permutation Entropy ◽  
Limiting Factor ◽  
Embedding Dimension ◽  
Class Segmentation ◽  
Biosignal Classification

Two main weaknesses have been identified for permutation entropy (PE): the neglect of subsequence pattern differences in terms of amplitude and the possible ambiguities introduced by equal values in the subsequences. A number of variations or customizations to the original PE method to address these issues have been proposed in the scientific literature recently. Specifically for ties, methods have tried to remove the ambiguity by assigning different weighted or computed orders to equal values. Although these methods are able to circumvent such ambiguity, they can substantially increase the algorithm costs, and a general characterization of their practical effectiveness is still lacking. This paper analyses the performance of PE using several biomedical datasets (electroencephalogram, heartbeat interval, body temperature, and glucose records) in order to quantify the influence of ties on its signal class segmentation capability. This capability is assessed in terms of statistical significance of the PE differences between classes and classification sensitivity and specificity. Being obvious that ties modify the PE results, we hypothesize that equal values are intrinsic to the acquisition process, and therefore, they impact all the classes more or less equally. The experimental results confirm ties are often not the limiting factor for PE, even they can be beneficial as a sort of stochastic resonance, and it can be far more effective to focus on the embedding dimension instead.

scholarly journals HRV analysis: undependability of approximate entropy at locating optimum complexity in malnourished children

2021 ◽  
pp. 1-6
Author(s):  
David M. Garner ◽  
Gláucia S. Barreto ◽  
Vitor E. Valenti ◽  
Franciele M. Vanderlei ◽  
Andrey A. Porto ◽  
...  
Keyword(s):  
Statistical Significance ◽  
Accurate Determination ◽  
Approximate Entropy ◽  
Effect Sizes ◽  
Potential Hazard ◽  
Autonomic Modulation ◽  
Embedding Dimension ◽  
Malnourished Children ◽  
Hrv Analysis

Abstract Introduction: Approximate Entropy is an extensively enforced metric to evaluate chaotic responses and irregularities of RR intervals sourced from an eletrocardiogram. However, to estimate their responses, it has one major problem – the accurate determination of tolerances and embedding dimensions. So, we aimed to overt this potential hazard by calculating numerous alternatives to detect their optimality in malnourished children. Materials and methods: We evaluated 70 subjects split equally: malnourished children and controls. To estimate autonomic modulation, the heart rate was measured lacking any physical, sensory or pharmacologic stimuli. In the time series attained, Approximate Entropy was computed for tolerance (0.1→0.5 in intervals of 0.1) and embedding dimension (1→5 in intervals of 1) and the statistical significances between the groups by their Cohen’s ds and Hedges’s gs were totalled. Results: The uppermost value of statistical significance accomplished for the effect sizes for any of the combinations was −0.2897 (Cohen’s ds) and −0.2865 (Hedges’s gs). This was achieved with embedding dimension = 5 and tolerance = 0.3. Conclusions: Approximate Entropy was able to identify a reduction in chaotic response via malnourished children. The best values of embedding dimension and tolerance of the Approximate Entropy to identify malnourished children were, respectively, embedding dimension = 5 and embedding tolerance = 0.3. Nevertheless, Approximate Entropy is still an unreliable mathematical marker to regulate this.

scholarly journals Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sami Havukainen ◽  
Jonai Pujol-Giménez ◽  
Mari Valkonen ◽  
Ann Westerholm-Parvinen ◽  
Matthias A. Hediger ◽  
...  
Keyword(s):  
Trichoderma Reesei ◽  
Scientific Literature ◽  
Large Body ◽  
Comprehensive Analysis ◽  
Transport Function ◽  
Sugar Transporters ◽  
New Knowledge ◽  
Electrophysiological Characterization ◽  
Shed Light

AbstractTrichoderma reesei is an ascomycete fungus known for its capability to secrete high amounts of extracellular cellulose- and hemicellulose-degrading enzymes. These enzymes are utilized in the production of second-generation biofuels and T. reesei is a well-established host for their production. Although this species has gained considerable interest in the scientific literature, the sugar transportome of T. reesei remains poorly characterized. Better understanding of the proteins involved in the transport of different sugars could be utilized for engineering better enzyme production strains. In this study we aimed to shed light on this matter by characterizing multiple T. reesei transporters capable of transporting various types of sugars. We used phylogenetics to select transporters for expression in Xenopus laevis oocytes to screen for transport activities. Of the 18 tested transporters, 8 were found to be functional in oocytes. 10 transporters in total were investigated in oocytes and in yeast, and for 3 of them no transport function had been described in literature. This comprehensive analysis provides a large body of new knowledge about T. reesei sugar transporters, and further establishes X. laevis oocytes as a valuable tool for studying fungal sugar transporters.

Significance tests: Necessary but not sufficient

1998 ◽  
Vol 21 (2) ◽  
pp. 221-222
Author(s):  
Louis G. Tassinary
Keyword(s):  
Effect Size ◽  
Scientific Community ◽  
Statistical Significance ◽  
Significance Tests ◽  
Experimental Control

Chow (1996) offers a reconceptualization of statistical significance that is reasoned and comprehensive. Despite a somewhat rough presentation, his arguments are compelling and deserve to be taken seriously by the scientific community. It is argued that his characterization of literal replication, types of research, effect size, and experimental control are in need of revision.

Performance Characterization of a Twin Scroll Volute for Turbocharging Applications

2018 ◽  
Author(s):  
Carlo Cravero ◽  
Mario La Rocca ◽  
Andrea Ottonello
Keyword(s):  
Experimental Data ◽  
Scientific Literature ◽  
Aerodynamic Performance ◽  
Operating Conditions ◽  
Automatic Design ◽  
Cfd Model ◽  
Radial Turbine ◽  
Wide Range ◽  
Partial Admission

The use of twin scroll volutes in radial turbine for turbocharging applications has several advantages over single passage volute related to the engine matching and to the overall compactness. Twin scroll volutes are of increasing interest in power unit development but the open scientific literature on their performance and modelling is still quite limited. In the present work the performance of a twin scroll volute for a turbocharger radial turbine are investigated in some detail in a wide range of operating conditions at both full and partial admission. A CFD model for the volute have been developed and preliminary validated against experimental data available for the radial turbine. Then the numerical model has been used to generate the database of solutions that have been investigated and used to extract the performance. Different parameters and indices are introduced to describe the volute aerodynamic performance in the wide range of operating conditions chosen. The above parameters can be used for volute development or matching with a given rotor or efficiently implemented in automatic design optimization strategies.

scholarly journals Sexual violence as a limiting factor on the perception and management of the risk of HIV in women married to migrants

2016 ◽  
Vol 24 (0) ◽  
Author(s):  
Yesica Yolanda Rangel Flores
Keyword(s):  
Rural Communities ◽  
Sexual Violence ◽  
Participant Observation ◽  
Sexual Practices ◽  
Limiting Factor ◽  
Daily Lives ◽  
Perceptions Of Risk ◽  
Methodological Triangulation ◽  
Migration Experiences

ABSTRACT Objective: to analyze the influence of sexual violence on the perception and management of the risk of HIV in women married to migrants. Methods: study with an ethnographic approach carried out in urban and rural communities. Data were obtained by methodological triangulation, with participant and non-participant observation, as well as interviews. The informants were 21 women married to international migrants. The interviews were transcribed and discourse analysis was applied to them. Results: three categories emerged from the speeches to problematize the influence of sexual violence in the perception and management of the risk of HIV: "Characterization of sexual practices in the context of migration", "Experiences of sexual violence" and "Construction of the risk of HIV-AIDS". Conclusion: women have difficulty to recognize the acts of sexual violence in their daily lives, and their perceptions of risk are not decisive in the management of the threat to which they are exposed. Therefore, it is becoming increasingly urgent that nursing problematizes the sexual violence within "steady couples", as a challenge to the promotion of healthy lifestyles.

scholarly journals A Novel Permutation Entropy-Based EEG Channel Selection for Improving Epileptic Seizure Prediction

Sensors ◽  
2021 ◽  
Vol 21 (23) ◽  
pp. 7972
Author(s):  
Jee S. Ra ◽  
Tianning Li ◽  
Yan Li
Keyword(s):  
Sensitivity And Specificity ◽  
Epileptic Seizure ◽  
Epileptic Seizures ◽  
Optimization Method ◽  
Channel Selection ◽  
Permutation Entropy ◽  
Patient Specific ◽  
Support Vector ◽  
Seizure Prediction ◽  
Epileptic Seizure Prediction

The key research aspects of detecting and predicting epileptic seizures using electroencephalography (EEG) signals are feature extraction and classification. This paper aims to develop a highly effective and accurate algorithm for seizure prediction. Efficient channel selection could be one of the solutions as it can decrease the computational loading significantly. In this research, we present a patient-specific optimization method for EEG channel selection based on permutation entropy (PE) values, employing K nearest neighbors (KNNs) combined with a genetic algorithm (GA) for epileptic seizure prediction. The classifier is the well-known support vector machine (SVM), and the CHB-MIT Scalp EEG Database is used in this research. The classification results from 22 patients using the channels selected to the patient show a high prediction rate (average 92.42%) compared to the SVM testing results with all channels (71.13%). On average, the accuracy, sensitivity, and specificity with selected channels are improved by 10.58%, 23.57%, and 5.56%, respectively. In addition, four patient cases validate over 90% accuracy, sensitivity, and specificity rates with just a few selected channels. The corresponding standard deviations are also smaller than those used by all channels, demonstrating that tailored channels are a robust way to optimize the seizure prediction.

Hydraulic characterization of low flow drip irrigation emitters used in intensive horticultural crops in Almeria (Spain)

2021 ◽  
Author(s):  
María Fátima Moreno-Pérez ◽  
Rafael Baeza-Cano ◽  
José Roldán-Cañas ◽  
Gema Cánovas-Fernández ◽  
Rafael Reyes-Requena
Keyword(s):  
Drip Irrigation ◽  
Low Flow ◽  
Limiting Factor ◽  
Fundamental Parameters ◽  
Horticultural Crops ◽  
Hydraulic Behaviour ◽  
Use Efficiency ◽  
Manufacturing Variation ◽  
Very High

<p>In the present work, a selection of drip irrigation emitters used in greenhouse horticultural crops in the province of Almeria, Spain, were hydraulically evaluated, studying their hydraulic behavior and whether they meet with quality standards. Since manufacturers are offering lower flow emitters less spaced, all drippers tested are low flow. The hydraulic characterization will indicate the discharge and emission uniformity of the manufactured emitters, which are the fundamental parameters for the study of water use efficiency in drip irrigation. In the province of Almeria, water is a limiting factor due to the existence of a semi-arid climate, and, in addition, these limited water resources are used by intensive agriculture which causes a high consumption of these resources.</p><p>In total, 21 emitters have been evaluated, including all possible drippers according to their type of insertion (inline, pinched or online and interlinea), hydraulic behaviour (non-compensating and self-compensating) and, within the compensating ones, (anti-draining and non anti-draining). Its flow rates are between 1 and 2.4 l/h, except for a non-compensating interlina emitter of 3.8 l/h.</p><p>To carry out these tests, the criteria of the ISO 9261:2004 standard have been followed, calculating the coefficient of manufacturing variation and the emitter discharge equation on a test bench located in the La Mojonera Centre (Almeria) of the IFAPA (Andalusian Institute of Agricultural and Fishing Research and Training).</p><p>The results of this study show very good behavior in most of the emitters, and, as a consequence, a low coefficient of manufacturing variation has been obtained. The discharge equation obtained in the laboratory shows a low emisión exponent in the self-compensating emitters, being, therefore, the compensation of the pressures very high in all cases. No statistically significant differences have been found between self-compensating and non-compensating emitters by analysing their manufacturing variation coefficients. Nor have any significant differences been found between self-compensating emitters according to whether they are anti-draining or non-anti-draining, considering also the coefficient of variation. In anti-draining emitters, all closing pressures are not satisfied according to the standard, and are exceeded with very high values. The opening pressure is met for two of the four emitters, and one of those that does not meet it does so with a very large value.</p>

Three-year results of phase I retinal gene therapy trial for CNGA3-mutated achromatopsia: results of a non randomised controlled trial

2021 ◽  
pp. bjophthalmol-2021-319067
Author(s):  
Felix Friedrich Reichel ◽  
Stylianos Michalakis ◽  
Barbara Wilhelm ◽  
Ditta Zobor ◽  
Regine Muehlfriedel ◽  
...  
Keyword(s):  
Gene Therapy ◽  
Primary Endpoint ◽  
Statistical Power ◽  
Small Sample Size ◽  
Controlled Trial ◽  
Statistical Significance ◽  
Small Sample ◽  
Functional Improvement ◽  
Limiting Factor ◽  
Serious Adverse Events

AimsTo determine long-term safety and efficacy outcomes of a subretinal gene therapy for CNGA3-associated achromatopsia. We present data from an open-label, nonrandomised controlled trial (NCT02610582).MethodsDetails of the study design have been previously described. Briefly, nine patients were treated in three escalating dose groups with subretinal AAV8.CNGA3 gene therapy between November 2015 and October 2016. After the first year, patients were seen on a yearly basis. Safety assessment constituted the primary endpoint. On a secondary level, multiple functional tests were carried out to determine efficacy of the therapy.ResultsNo adverse or serious adverse events deemed related to the study drug occurred after year 1. Safety of the therapy, as the primary endpoint of this trial, can, therefore, be confirmed. The functional benefits that were noted in the treated eye at year 1 were persistent throughout the following visits at years 2 and 3. While functional improvement in the treated eye reached statistical significance for some secondary endpoints, for most endpoints, this was not the case when the treated eye was compared with the untreated fellow eye.ConclusionThe results demonstrate a very good safety profile of the therapy even at the highest dose administered. The small sample size limits the statistical power of efficacy analyses. However, trial results inform on the most promising design and endpoints for future clinical trials. Such trials have to determine whether treatment of younger patients results in greater functional gains by avoiding amblyopia as a potential limiting factor.

Sign in / Sign up

Export Citation Format

Share Document