scholarly journals Molecular Mutations and Their Cooccurrences in Cytogenetically Normal Acute Myeloid Leukemia

2017 ◽  
Vol 2017 ◽  
pp. 1-11 ◽  
Author(s):  
Mengning Wang ◽  
Chuanwei Yang ◽  
Le Zhang ◽  
Dale G. Schaar

Adult acute myeloid leukemia (AML) clinically is a disparate disease that requires intensive treatments ranging from chemotherapy alone to allogeneic hematopoietic cell transplantation (allo-HCT). Historically, cytogenetic analysis has been a useful prognostic tool to classify patients into favorable, intermediate, and unfavorable prognostic risk groups. However, the intermediate-risk group, consisting predominantly of cytogenetically normal AML (CN-AML), itself exhibits diverse clinical outcomes and requires further characterization to allow for more optimal treatment decision-making. The recent advances in clinical genomics have led to the recategorization of CN-AML into favorable or unfavorable subgroups. The relapsing nature of AML is thought to be due to clonal heterogeneity that includes founder or driver mutations present in the leukemic stem cell population. In this article, we summarize the clinical outcomes of relevant molecular mutations and their cooccurrences in CN-AML, includingNPM1,FLT3ITD,DNMT3A,NRAS,TET2,RUNX1,MLLPTD,ASXL1,BCOR,PHF6,CEBPAbiallelic,IDH1,IDH2R140, andIDH2R170, with an emphasis on their relevance to the leukemic stem cell compartment. We have reviewed the available literature and TCGA AML databases (2013) to highlight the potential role of stem cell regulating factor mutations on outcome within newly defined AML molecular subgroups.

Blood ◽  
2018 ◽  
Vol 132 (Supplement 1) ◽  
pp. 1449-1449
Author(s):  
Jean-Emmanuel Sarry ◽  
Christian Recher ◽  
Clément Larrue

Abstract After intensive chemotherapy, the emergence of cells with drug resistant and/or stem cell features might explain frequent relapses and the poor outcome of patients with acute myeloid leukemia (AML). Herein, we first uncovered that the adrenomedullin receptor CALCRL is overexpressed in AML patients compared to normal cells and preferentially in the immature CD34+CD38- compartment. Then, we demonstrated its role in the maintenance of leukemic stem cell function in vivo (Figure A). Moreover, CALCRL depletion strongly affected leukemic growth in xenograft models and sensitized to chemotherapeutic agent cytarabine in vivo. Accordingly, we showed that ADM-CALCRL axis drove BCL2 pathway, cell cycle and DNA integrity in E2F1-dependent manner, and high OxPHOS status that we previously described as a feature of minimal residual disease after chemotherapy (Farge et al., 2017). Moreover, CALCRL expression predicted the response to chemotherapy in vivo in mice (n=10 Patient Derived Xenografts; Figure B) and in patients. Further, using the combination of limiting dilution assays, single cell RNA-seq analysis of primary AML samples at diagnosis and relapse and before and after transplantation in NSG mice, we revealed the pre-existence of a chemoresistant leukemic stem cell sub-population harboring a CALCRL gene signature (Figure C-D). All of these data highlight the critical role of CALCRL in stem cell function and metabolism. They also identify this receptor as a new druggable marker of chemoresistant leukemic stem cell population and a promising therapeutic target to specifically eradicate them and overcome relapse in AML. Disclosures No relevant conflicts of interest to declare.


PLoS ONE ◽  
2014 ◽  
Vol 9 (9) ◽  
pp. e107587 ◽  
Author(s):  
Monique Terwijn ◽  
Wendelien Zeijlemaker ◽  
Angèle Kelder ◽  
Arjo P. Rutten ◽  
Alexander N. Snel ◽  
...  

Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 91-91
Author(s):  
Nicolas Goardon ◽  
Emmanuele Marchi ◽  
Lynn Quek ◽  
Anna Schuh ◽  
Petter Woll ◽  
...  

Abstract Abstract 91 In normal and leukemic hemopoiesis, stem cells differentiate through intermediate progenitors into terminal cells. In human Acute Myeloid Leukemia (AML), there is uncertainty about: (i) whether there is more than one leukemic stem cell (LSC) population in any one individual patient; (ii) how homogeneous AML LSCs populations are at a molecular and cellular level and (iii) the relationship between AML LSCs and normal stem/progenitor populations. Answers to these questions will clarify the molecular pathways important in the stepwise transformation of normal HSCs/progenitors. We have studied 82 primary human CD34+ AML samples (spanning a range of FAB subtypes, cytogenetic categories and FLT3 and NPM1 mutation states) and 8 age-matched control marrow samples. In ∼80% of AML cases, two expanded populations with hemopoietic progenitor immunophenotype coexist in most patients. One population is CD34+CD38-CD90-CD45RA+ (CD38-CD45RA+) and the other CD34+CD38+CD110-CD45RA+ (GMP-like). Both populations from 7/8 patients have leukemic stem cell (LSC) activity in primary and secondary xenograft assays with no LSC activity in CD34- compartment. The two CD34+ LSC populations are hierarchically ordered, with CD38-CD45RA+ LSC giving rise to CD38+CD45RA+ LSC in vivo and in vitro. Limit dilution analysis shows that CD38-CD45RA+LSCs are more potent by 8–10 fold. From 18 patients, we isolated both CD38-CD45RA+ and GMP-like LSC populations. Global mRNA expression profiles of FACS-sorted CD38-CD45RA+ and GMP-like populations from the same patient allowed comparison of the two populations within each patient (negating the effect of genetic/epigenetic changes between patients). Using a paired t-test, 748 genes were differentially expressed between CD38-CD45RA+ and GMP-like LSCs and separated the two populations in most patients in 3D PCA. This was confirmed by independent quantitative measures of difference in gene expression using a non-parametric rank product analysis with a false discovery rate of 0.01. Thus, the two AML LSC populations are molecularly distinct. We then compared LSC profiles with those from 4 different adult marrow normal stem/progenitor cells to identify the normal stem/progenitor cell populations which the two AML LSC populations are most similar to at a molecular level. We first obtained a 2626 gene set by ANOVA, that maximally distinguished normal stem and progenitor populations. Next, the expression profiles of 22 CD38-CD45RA+ and 21 GMP-like AML LSC populations were distributed by 3D PCA using this ANOVA gene set. This showed that AML LSCs were most closely related to their normal counterpart progenitor population and not normal HSC. This data was confirmed quantitatively by a classifier analysis and hierarchical clustering. Taken together, the two LSC populations are hierarchically ordered, molecularly distinct and their gene expression profiles do not map most closely to normal HSCs but rather to their counterpart normal progenitor populations. Finally, as global expression profiles of CD38-CD45RA+ AML LSC resemble normal CD38-CD45RA+ cells, we defined the functional potential of these normal cells. This had not been previously determined. Using colony and limiting dilution liquid culture assays, we showed that single normal CD38-CD45RA+ cells have granulocyte and macrophage (GM), lymphoid (T and B cell) but not megakaryocyte-erythroid (MK-E) potential. Furthermore, gene expression studies on 10 cells showed that CD38-CD45RA+ cells express lymphoid and GM but not Mk-E genes. Taken together, normal CD38-CD45RA+ cells are most similar to mouse lymphoid primed multi-potential progenitor cells (LMPP) cells and distinct from the recently identified human Macrophage Lymphoid progenitor (MLP) population. In summary, for the first time, we show the co-existence of LMPP-like and GMP-like LSCs in CD34+ AML. Thus, CD34+ AML is a progenitor disease where LSCs have acquired abnormal self-renewal potential (Figure 1). Going forward, this work provides a platform for determining pathological LSCs self-renewal and tracking LSCs post treatment, both of which will impact on leukemia biology and therapy. Disclosures: No relevant conflicts of interest to declare.


Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 4120-4120
Author(s):  
Bijan Moshaver ◽  
Angele Kelder ◽  
Guus Westra ◽  
Anna van Rhenen ◽  
Gert J. Ossenkoppele ◽  
...  

Abstract Acute myeloid leukemia (AML) likely originates from the CD34+CD38- hematopoietic stem cell (HSC). The so-called side population (SP), defined by Hoechst 33342 dye, might offer an alternative/supplementary stem cell compartment. The relationship between both compartments is largely unknown. We found that the CD34+CD38- compartment can be subdivided in an AML and normal compartment, based on expression of AML stem cell specific antigen CLL-1: CLL-1 positive CD34+CD38- cells carry AML specific cytogenetic aberrations and initiate leukemia in NOD/SCID mice (van Rhenen, Blood 2007, in press). Lineage aberrancies including CD7, CD19, CD56 and aberrant myeloid aberrancies, enabled to further define AML and normal CD34+CD38- sub-compartments (van Rhenen et al., Leukemia21:1700, 2007). This led us to investigate whether SP too have aberrancies and whether these define primitive stem cells. SP cells were detected in 40 of 47 AML patients with median frequency of 0.02% (range 0.002–7.6%). In the majority of cases there was also a CD34+CD38- compartment with a median frequency of 0.44% (range 0–27%), which is 22 fold higher (in all individual cases >1-fold) than SP frequency. The median frequency of CD34+CD38- cells within SP compartment was only 2.5% (range: 0–49%). SP cells were partly or completely positive for CLL-1 (median 53%), CD123 (27%), CD7 (35%), CD19 (20%) and CD56 (53%). SP cells in NBM (n=12; median frequency 0.12%, range 0.008–4.1%) were completely negative for CLL-1 and lineage markers (median 0%, ranges 0–4% at maximum), but not for CD123 (median expression 27%, range 1–82%). These results strongly suggest that considerable part of SP cells are malignant, which was confirmed by FISH analysis. The whole SP fraction was remarkably heterogeneous with at least 4 different subpopulations present: 3 with lymphoid characteristics, ie CD7+ (median 7% of total SP), CD19+ (2%) and CD56+ (4%), all 3 CD45high and CD48+; a myeloid population (median 54% of SP population; range 4–91%), CD45low and CD48-, with relatively high forward and sideward scatter (FSChigh/SSChigh) and high CD38 expression (median 82%) and usually with aberrant marker expression; a low-frequency FSClow/SSClow myeloid fraction, CD45low and CD48-, with lower CD38 expression (median 48%), and negative for aberrant markers and a similar population but with aberrant markers present. The latter, presumably primitive, malignant population had median frequency (of WBC) of 0.0018% (range 0.00016–0.0056%). The CD34+CD38- content herein was 20% at maximum. NBM too had the 3 lymphoid populations (median 8%, 2% and 5%, resp), the FSChigh/SSChigh myeloid population (in 9/12 cases) and the FSClow/SSClow myeloid population (12/12 cases). The putative primitive character of the AML FSClow/SSClow SP subpopulation was substantiated by suspension culture for 5 weeks with subsequent CFU assay (14 days): FSClow/SSClow cells had >200 fold clonogenic ability compared to FSChigh/SSChigh cells. In conclusion, the AML SP compartment is highly heterogeneous and contains a low-frequency (median 1:50,000) subpopulation, defined by aberrant markers and with primitive characteristics, as a likely candidate stem cell population. In a stem cell concept integrating the CD34+CD38- and SP compartment, the presumed AML stem cell frequency would be in the order of 1:250,000. which probably is close to the presumed frequency of leukemia initiating cells in diagnosis AML.


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 2586-2586
Author(s):  
Juana Serrano-Lopez ◽  
Josefina Serrano ◽  
Joaquín Sanchez-Garcia ◽  
Noemi Fernandez-Escalada ◽  
Maria del Carmen Martinez-Losada ◽  
...  

Abstract Abstract 2586 Introduction: Acute Myeloid Leukemia (AML) is a heterogeneous disorder arising from a clonal expansion of Leukemic Stem Cell (LSC). The characterization of LSC is crucial because it is resistant to conventional chemotherapy and is ultimately responsible for leukemic relapses. The LSC in AML is a phenotypically heterogeneous population (CD34+CD38-, CLL1 +, CD96 +…). In this sense, “Side Population” cells (SPHo342Low) are considered to be a type of stem cells that can self-renew and differentiate into tissues. SP are characterized by their ability to efflux the vital dye Hoechst 33342 through the drug ABCG2 pump. SPHo342Low cells have been described in many types of solid tumors and AML as potential LSC. The objective in this study is to analyze the frequency of SPHo342Low in AML, their phenotype and the possible prognostic impact on outcomes. Patients and Methods: Bone marrow samples (BM) obtained from 57 patients (median age 58 years, range: 4–82), diagnosed with AML between Mar-07 to Mar-12, were included. Distribution of cytogenetic risk groups was: Favorable (12.5%), Intermediate (60.7%) and Unfavorable (26.8%). NPM1mut was present in 11 cases and FLT3-ITD in 6 cases. Prior MDS was present in 10 cases. After achieving complete remission (CR) with conventional chemotherapy, allogeneic or autologous stem cell transplantation was performed in 17 and 12 patients respectively, according to individual risk and availability of donor. Eleven frail patients received as front-line, low intensity therapy with Azacytidine. We detected LSC, SPHo342Low in marrow MNCs obtained at diagnosis (N=40), at morphologic complete remission (CR) (N=21) or at relapsed / resistant (N=16) disease. For detection, 2×10(6) MNC/ml were resuspended in HBSS medium with 5 ug/ml of Ho342 dye and CD45-FITC, CD34-PE Mn-Abs, analyzing at least 1×105 viable cells in UV laser FACSVantage cytometer with the combination of filters BP 670/40 for emission in red and BP 450/30 for the blue emission. We verified SP region by inhibiting ABCG2 pump with Verapamil (50μM/mL). As controls we analyzed MNCs from BM aspirates from healthy donors (N=5). Results: In all BM samples from healthy donors, SPHo342Low population was detected accounting for 0.5% (range: 0.1 to 0.9%) and it was CD34negCD45neg phenotype in 80% of cases. SPHo342Low cells were detected in 23/40 cases (57.5%) of samples from AML diagnosis with a median of 0.08% (range 0.01–2.3%). Phenotype of SPHo342Low cells at diagnosis was CD34+CD45+/− in 36% of cases. The presence of SPHo342Low cells presented in AML at diagnosis did not statistically correlate with any prognostic clinical variables such as age, cytogenetic-molecular risk or prior MDS. Interestingly, the detection of LSC SPHo342Low at diagnosis was statistically associated to the presence of >0.1% of CD34+CD38- AML cells (P=0,03). In BM samples obtained from AML patients in CR, SPHo342Low cells were detected in 17/21 (81.0%) with a median of 0.17% (range: 0.1 to 0.76%), with a phenotype mostly CD34 negative. In BM samples obtained from AML patients in relapsed/refractory situation, SPHo342Low cells were detected in 14/16 (87.5%) with a median of 0.22% (range: 0.2 to 0.91%) with a phenotype of CD34+ CD45+/− in 33% of cases. Interestingly, patients who did not achieve CR, have a significantly higher percentage of SPHo342Low at diagnosis (0.42% vs. 0.06%, P = 0.044) as well as those who need more than one cycle to achieve CR (0.52% vs. 0.07%, P = 0.04). Moreover, for those patients achieving CR, persistence of Minimal Residual Disease (MRD+) was associated to a higher percentage of SPHo342Low at diagnosis (0.28% vs. 0.05%, P = 0.021). Likewise, Relapse-free survival (RFS) was significantly higher in AML patients lacking SPHo342Low at diagnosis (70 ± 18.2% vs. 43.3 ± 17.6%, P = 0.0324, Log rank test). Conclusions: Detection of LSC SPHo342Low+CD34+CD45+/− phenotype in AML at diagnosis is a common finding that is associated with increased resistance to achieve CR, clearance of MRD and lower RFS. During progression of disease this SPHo342Low+ population increases and maintains CD34+CD45neg phenotype. BM samples obtained from AML patients at CR were SPHo342Low+ CD34negCD45+/− phenotype which can be considered responsible for normal hematopoietic regeneration. Disclosures: No relevant conflicts of interest to declare.


Sign in / Sign up

Export Citation Format

Share Document