scholarly journals Bioremediation of Mercury by Vibrio fluvialis Screened from Industrial Effluents

2017 ◽  
Vol 2017 ◽  
pp. 1-6 ◽  
Author(s):  
Kailasam Saranya ◽  
Arumugam Sundaramanickam ◽  
Sudhanshu Shekhar ◽  
Sankaran Swaminathan ◽  
Thangavel Balasubramanian
Keyword(s):  
Ribosomal Rna ◽  
Inhibitory Concentration ◽  
Industrial Effluents ◽  
Industrial Area ◽  
Mercury Ions ◽  
Bacterial Strains ◽  
Vibrio Fluvialis ◽  
Removal Capacity ◽  
16S Ribosomal Rna Gene ◽  
High Minimum Inhibitory Concentration

Thirty-one mercury-resistant bacterial strains were isolated from the effluent discharge sites of the SIPCOT industrial area. Among them, only one strain (CASKS5) was selected for further investigation due to its high minimum inhibitory concentration of mercury and low antibiotic susceptibility. In accordance with 16S ribosomal RNA gene sequences, the strain CASKS5 was identified as Vibrio fluvialis. The mercury-removal capacity of V. fluvialis was analyzed at four different concentrations (100, 150, 200, and 250 μg/ml). Efficient bioremediation was observed at a level of 250 μg/ml with the removal of 60% of mercury ions. The interesting outcome of this study was that the strain V. fluvialis had a high bioremediation efficiency but had a low antibiotic resistance. Hence, V. fluvialis could be successfully used as a strain for the ecofriendly removal of mercury.

scholarly journals High cadmium uptake ability of Bacillus cereus strains isolated from rhizosphere of Tagetes minuta L. growing in cadmium-polluted soil

2018 ◽  
Vol 47 (3) ◽  
pp. 515-522 ◽  
Author(s):  
Kulsoom Akhter ◽  
Tahseen Ghous ◽  
Muhammad Siddique Awan ◽  
Zain Ul-Abdin ◽  
Basharat Hussain
Keyword(s):  
Bacillus Cereus ◽  
Inhibitory Concentration ◽  
Polluted Soil ◽  
Maximum Adsorption Capacity ◽  
Bacterial Strains ◽  
Removal Capacity ◽  
Tagetes Minuta ◽  
Uncontaminated Soil ◽  
Langmuir And Freundlich Models ◽  
Percent Removal

Microbes resistant to heavy metals develop mechanisms to accumulate Cd(II) in their cells. Two bacterial strains, Bacillus cereus AVP12 and B. cereus NC7401 which grew at high Cd(II) concentration were isolated from roots of Tagetes minuta L. growing in Cd(II) contaminated and uncontaminated soil. Minimum inhibitory concentration (MIC) and percent removal capacity were determined as function of pH, contact time and initial Cd(II) concentration. Bioaccumulation capacity was determined to observe possible effect of two different rhizospheres on Cd(II) removal capacity of both strains. Both strains were resistant up to 300 mg/l Cd(II) concentration. The percent removal capacity of both strains was maximum at pH 7 and incubation time of 24 hrs. High bioaccumulation capacity was observed with increasing Cd(II) concentration. Both Langmuir and Freundlich models fitted well to data of Cd(II) bioaccumulation. Though, maximum adsorption capacity (Qo) was observed for strains isolated from both types of rhizospheres, however remarkable Qo values of 434.0 and 212.7 mg/g were observed for Bacillus cereus AVP12 and NC7401, respectively isolated from polluted rhizosphere. Bacillus cereus strains growing in polluted rhizosphere can develop high Cd(II) uptake ability in comparison to non-polluted rhizosphere.

scholarly journals Molecular Approaches to Studying Microbial Communities: Targeting the 16S Ribosomal RNA Gene

2016 ◽  
Vol 38 (3) ◽  
pp. 223-232 ◽  
Author(s):  
Kazumasa FUKUDA ◽  
Midori OGAWA ◽  
Hatsumi TANIGUCHI ◽  
Mitsumasa SAITO
Keyword(s):  
Microbial Communities ◽  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Approaches To Studying ◽  
Ribosomal Rna Gene ◽  
Molecular Approaches ◽  
16S Ribosomal Rna Gene

scholarly journals Evaluation of 16S, map1 and pCS20 probes for detection of Cowdria and Ehrlichia species

1999 ◽  
Vol 122 (2) ◽  
pp. 323-328 ◽  
Author(s):  
M. T. E. P. ALLSOPP ◽  
C. M. HATTINGH ◽  
S. W. VOGEL ◽  
B. A. ALLSOPP
Keyword(s):  
16S Rrna ◽  
Ribosomal Rna ◽  
Pcr Amplification ◽  
16S Ribosomal Rna ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Amblyomma Hebraeum ◽  
Ribosomal Rna Gene ◽  
Group Iii ◽  
16S Ribosomal Rna Gene

A panel of 16S ribosomal RNA gene probes has been developed for the study of the epidemiology of heartwater; five of these detect different cowdria genotypes, one detects five distinct genotypes; one detects any Group III Ehrlichia species other than Cowdria and one detects any Group II Ehrlichia species. These probes have been used on PCR-amplified rickettsial 16S rRNA genes from over 200 Amblyomma hebraeum ticks. Control ticks were laboratory-reared and either uninfected or fed on sheep experimentally infected with different cowdria isolates, field ticks were collected from animals in heartwater-endemic areas. All tick-derived DNA samples were also examined by PCR amplification and probing for two other cowdria genes (map1 and pCS20) which have previously been used for heartwater epidemiology. This paper describes the first direct comparison of all currently available DNA probes for heartwater-associated organisms.

scholarly journals A Case of Sepsis in a 92-Year-Old Korean Woman Caused byAerococcus urinaeand Identified by Sequencing the 16S Ribosomal RNA Gene

2016 ◽  
Vol 47 (2) ◽  
pp. e15-e17 ◽  
Author(s):  
Min Young Lee ◽  
Myeong Hee Kim ◽  
Woo In Lee ◽  
So Young Kang ◽  
You La Jeon
Keyword(s):  
Ribosomal Rna ◽  
16S Ribosomal Rna ◽  
Korean Woman ◽  
Ribosomal Rna Gene ◽  
16S Ribosomal Rna Gene

scholarly journals Cytotoxic Potential of the Novel Horseshoe Crab Peptide Polyphemusin III

Marine Drugs ◽  
2018 ◽  
Vol 16 (12) ◽  
pp. 466 ◽  
Author(s):  
Mariana Marggraf ◽  
Pavel Panteleev ◽  
Anna Emelianova ◽  
Maxim Sorokin ◽  
Ilia Bolosov ◽  
...  
Keyword(s):  
Plasma Membrane ◽  
Horseshoe Crab ◽  
Inhibitory Concentration ◽  
Human Cancer ◽  
Membrane Integrity ◽  
Antimicrobial Effect ◽  
Human Leukemia ◽  
Bacterial Strains ◽  
Trypan Blue Exclusion

Biological activity of the new antimicrobial peptide polyphemusin III from the horseshoe crab Limulus polyphemus was examined against bacterial strains and human cancer, transformed, and normal cell cultures. Polyphemusin III has the amino acid sequence RRGCFRVCYRGFCFQRCR and is homologous to other β-hairpin peptides from the horseshoe crab. Antimicrobial activity of the peptide was evaluated and MIC (minimal inhibitory concentration) values were determined. IC50 (half-maximal inhibitory concentration) values measured toward human cells revealed that polyphemusin III showed a potent cytotoxic activity at concentrations of <10 μM. Polyphemusin III caused fast permeabilization of the cytoplasmic membrane of human leukemia cells HL-60, which was measured with trypan blue exclusion assay and lactate dehydrogenase-release assay. Flow cytometry experiments for annexin V-FITC/ propidium iodide double staining revealed that the caspase inhibitor, Z-VAD-FMK, did not abrogate disruption of the plasma membrane by polyphemusin III. Our data suggest that polyphemusin III disrupts the plasma membrane integrity and induces cell death that is apparently not related to apoptosis. In comparison to known polyphemusins and tachyplesins, polyphemusin III demonstrates a similar or lower antimicrobial effect, but significantly higher cytotoxicity against human cancer and transformed cells in vitro.

scholarly journals Bacterial diversity in aortic aneurysms determined by 16S ribosomal RNA gene analysis

2006 ◽  
Vol 44 (5) ◽  
pp. 1055-1060 ◽  
Author(s):  
Rafael Marques da Silva ◽  
Dominique A. Caugant ◽  
Emenike R.K. Eribe ◽  
Jørn A. Aas ◽  
Per S. Lingaas ◽  
...  
Keyword(s):  
Bacterial Diversity ◽  
Ribosomal Rna ◽  
Aortic Aneurysms ◽  
16S Ribosomal Rna ◽  
Gene Analysis ◽  
Ribosomal Rna Gene ◽  
16S Ribosomal Rna Gene

scholarly journals Impact of industrial effluents on ground water and soil quality in the vicinity of industrial area of Panipat city, India

2013 ◽  
Vol 5 (1) ◽  
pp. 132-136 ◽  
Author(s):  
Pawan K. Bharti ◽  
Pawan Kumar ◽  
Vijender Singh
Keyword(s):  
Heavy Metals ◽  
Ground Water ◽  
Soil Quality ◽  
Agricultural Soil ◽  
Heavy Metal Contamination ◽  
Industrial Effluents ◽  
Industrial Area ◽  
Soil System ◽  
Transfer Factors ◽  
Agricultural Plant

The present paper is aimed towards the assessment of heavy metal contamination of agricultural soil due to irrigation with contaminated ground water affected by textile industrial effluents at Panipat city in India. Samples of ground water and irrigated soils from textile industrial area were analyzed for various heavy metals, viz. Mn, Ni, Fe, Cu, Cd, Pb and Zn, using Atomic Absorption Spectrophotometry. Metal transfer factors from ground water to irrigated agricultural soil and from soil to ground water were calculated for heavy metals. The findings deal with the distribution of heavy metals in ground water of industrial area and irrigated agricultural soil. Transfer factors for heavy metals from effluent to ground water were observed to be 0.436, 1.180, 6.461, 2.401, 2.790, 3.178 and 0.634 for Cd, Cu, Fe, Mn, Ni, Pb and Zn respectively. These were found to be very high from ground water to agriculture soil due to the natural shale value of heavy metals in soil system. Thus, untreated industrial effluents can cause an environmental threat to ground water resources and affects soil quality and agricultural plant productivity.

scholarly journals Antibiogram signatures of non-cholera causing Vibrio species recovered from environmental niches in Eastern Cape, South Africa.

2021 ◽  
Author(s):  
Oluwakemi Victoria Ayodele ◽  
Anthony Ifeanyi Okoh
Keyword(s):  
Minimum Inhibitory Concentration ◽  
Nalidixic Acid ◽  
Vibrio Parahaemolyticus ◽  
Inhibitory Concentration ◽  
Vibrio Vulnificus ◽  
Diffusion Method ◽  
Morbidity Rate ◽  
Antibiotic Resistant ◽  
Mortality And Morbidity ◽  
Vibrio Fluvialis

Abstract Background: The use of antibiotics globally has helped reduce mortality and morbidity rate due to its ability to effectively treat bacterial infections in both humans and animals. However, the menace of antimicrobial resistance has become a challenge to public health due to its increased mortality and morbidity rate. This study determined the antibiogram pattern of non-cholera causing Vibrio species against a panel of 11 antibiotics that are wildly used for treatment. Multiple antibiotic resistance phenotype, multiple antibiotic resistant indices and minimum inhibitory concentration (MIC) of test antibiotics were also determined.Results: Polymerase chain reaction (PCR) was used to confirm 100 isolates of Vibrio parahaemolyticus, 82 and 46 isolates of Vibrio vulnificus and Vibrio fluvialis respectively, collected from the culture collections of the Applied and Environmental Microbiology Research Group (AEMREG), University of Fort Hare. Thereafter, disc diffusion method was used to determine the antibiogram pattern of target non-cholera causing Vibrio species against a panel of 11 antibiotics that are of clinical importance. The highest rate of Vibrio parahaemolyticus resistance was observed against tetracycline (22 %) and nalidixic acid (16 %). Vibrio fluvialis also displayed highest rate of resistance against tetracycline (28 %) and nalidixic acid (28 %), while Vibrio vulnificus isolates exhibited highest rate resistance against imipenem (40 %) and tetracycline (22 %). A total of 38 MARP patterns were observed and the MAR indices ranged between 0.3 and 0.8. Against the resistant Vibrio parahaemolyticus and Vibrio fluvialis isolates, minimum inhibitory concentration ranged from 16 µg/ml to 2048 µg/ml for both tetracycline and nalidixic acid, while against Vibrio vulnificus isolates, minimum inhibitory concentration ranged from 8 µg/ml to 256 µg/ml for both imipenem and nalidixic acid. Conclusions: Results obtained from this study is an indication that antibiotic resistant bacteria that could pose as threat to health of humans and animals are present in the environment.

scholarly journals High-throughput isolation and sorting of gut microbes reduce biases of traditional cultivation strategies

2019 ◽  
Author(s):  
William J. Watterson ◽  
Melikhan Tanyeri ◽  
Andrea R. Watson ◽  
Candace M. Cham ◽  
Yue Shan ◽  
...  
Keyword(s):  
Ribosomal Rna ◽  
Fold Increase ◽  
Taxonomic Composition ◽  
Biased Sampling ◽  
Human Gut ◽  
Rare Taxa ◽  
Conventional Culture ◽  
16S Ribosomal Rna Gene ◽  
Slow Growing ◽  
New Strategies

AbstractTraditional cultivation approaches in microbiology are labor-intensive, low-throughput, and often yield biased sampling of taxa due to ecological and evolutionary factors. New strategies are needed to enable ample representation of rare taxa and slow-growers that are outcompeted by fast-growing organisms. We developed a microfluidic platform that anaerobically isolates and cultivates microbial cells in millions of picoliter droplets and automatically sorts droplets based on colony density. We applied our strategy to mouse and human gut microbiomes and used 16S ribosomal RNA gene amplicons to characterize taxonomic composition of cells grown using different media. We found up to 4-fold increase in richness and larger representation of rare taxa among cells grown in droplets compared to conventional culture plates. Automated sorting of droplets for slow-growing colonies further enhanced the relative abundance of rare populations. Our method improves the cultivation and analysis of diverse microbiomes to gain deeper insights into microbial functioning and lifestyles.

scholarly journals Ileal mucosa-associated microbiota overgrowth associated with pathogenesis of primary biliary cholangitis

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Shogo Kitahata ◽  
Yasunori Yamamoto ◽  
Osamu Yoshida ◽  
Yoshio Tokumoto ◽  
Tomoe Kawamura ◽  
...  
Keyword(s):  
Ribosomal Rna ◽  
Primary Biliary Cholangitis ◽  
Small Intestinal Mucosa ◽  
Ileal Mucosa ◽  
16S Ribosomal Rna Gene ◽  
Pathological Development ◽  
Small Intestinal ◽  
Chronic Nonsuppurative Destructive Cholangitis ◽  
Independent Association ◽  
The Relationship

AbstractThe small intestinal mucosa-associated microbiota (MAM) can potentially impact the etiology of primary biliary cholangitis (PBC). Herein, we investigate the MAM profile to determine its association with liver pathology in patients with PBC. Thirty-four patients with PBC and 21 healthy controls who underwent colonoscopy at our hospital were enrolled in our study. We performed 16S ribosomal RNA gene sequencing of MAM samples obtained from the mucosa of the terminal ileum and examined the relationship between the abundance of ileal MAM and chronic nonsuppurative destructive cholangitis using liver specimens from patients with PBC. There was a significant reduction in microbial diversity within individuals with PBC (P = 0.039). Dysbiosis of ileal MAM was observed in patients with PBC, with a characteristic overgrowth of Sphingomonadaceae and Pseudomonas. Multivariate analysis showed that the overgrowth of Sphingomonadaceae and Pseudomonas is an independent association factor for PBC (P = 0.0429, P = 0.026). Moreover, the abundance of Sphingomonadaceae was associated with chronic nonsuppurative destructive cholangitis in PBC (P = 0.00981). The overgrowth of Sphingomonadaceae and Pseudomonas in ileal MAM was found in patients with PBC. Sphingomonadaceae may be associated with the pathological development of PBC.

Sign in / Sign up

Export Citation Format

Share Document