scholarly journals Tree Species Diversity and Composition of Miombo Woodlands in South-Central Angola: A Chronosequence of Forest Recovery after Shifting Cultivation

2017 ◽  
Vol 2017 ◽  
pp. 1-13 ◽  
Author(s):  
Francisco M. P. Gonçalves ◽  
Rasmus Revermann ◽  
Amândio L. Gomes ◽  
Marcos P. M. Aidar ◽  
Manfred Finckh ◽  
...  
Keyword(s):  
Shifting Cultivation ◽  
Stand Structure ◽  
Woody Species ◽  
Distinct Group ◽  
Forest Recovery ◽  
Miombo Woodlands ◽  
Principal Coordinates Analysis ◽  
South Central ◽  
Principal Coordinates ◽  
Management Plans

The study was carried out in the Cusseque area of the Municipality of Chitembo in south-central Angola. Our objectives were to assess the floristic diversity, the species composition, and stand structure of Miombo woodlands during regeneration after shifting cultivation. A total of 40 plots of 1000 m2were surveyed and analyzed, corresponding to mature forests/woodlands and three fallow types of different age. The analyses were based on plot inventories of all trees with DBH ≥ 5 cm. A total of 51 woody species, 38 genera, and 19 families were recorded. The dominant family was Fabaceae, with subfamily Caesalpinioideae being very abundant. Shannon Diversity and Evenness were highest in mature forests and young fallows, while the mature forest stands showed the highest species richness. A Principal Coordinates Analysis (PCoA) showed many species shared between the intermediate fallow types, but only few species were shared with young fallows. Mature forests formed a clearly distinct group. This study shows potential pathways of forest recovery in terms of faster regeneration after agricultural abandonment and, thus, the results presented here can be used in future conservation and management plans in order to reduce the pressure on mature forests.

scholarly journals Structure et Régénération des Peuplements naturels de Balanites Aegyptiaca (L.) Del. et Ziziphus Mauritiana Lam. suivant un Gradient écologique dans la Région de Maradi au Niger

Afrika Focus ◽  
2020 ◽  
Vol 33 (1) ◽  
Author(s):  
Rabiou Habou ◽  
Moussa Massaoudou ◽  
Tougiani Abasse ◽  
Mahamane Ali ◽  
Mahamane Larwanou ◽  
...  
Keyword(s):  
Stand Structure ◽  
Woody Species ◽  
Food Sources ◽  
Ziziphus Mauritiana ◽  
Balanites Aegyptiaca ◽  
Total Height ◽  
South Central ◽  
Consequent Reduction ◽  
Agrosilvopastoral System ◽  
Sahelian Zone

Les espèces ligneuses jouent un rôle important dans la vie des populations locales. Parmi les espèces couramment utilisées au Niger figurent Balanites aegyptiaca et Ziziphus mauritiana. Ces deux espèces sont exploitées comme sources alimentaires et pour divers produits médicinaux, avec comme conséquence une réduction de leurs peuplements. La présente étude vise à analyser la structure des peuplements et les modes de régénération des deux espèces dans deux secteurs agro-écologiques contrastées de la région de Maradi au centre sud du Niger. Au total, 60 relevés ont été délimités, d’une part dans des formations naturelles dominées par ces espèces, et d’autre part dans les systèmes agrosylvopastoraux des secteurs sahélien et sahélo-soudanien. Dans chaque placette et sur chaque arbre, le diamètre à 1,30 m au rasdu sol , la hauteur totale et deux diamètres perpendiculaires de houppier ont été mesurés. L’inventaire de la régénération a été effectué dans 5 placeaux. La nature de la régénération (drageon, marcotte, semis naturel), la hauteur totale et le nombre de tiges de chaque plantule ont été notés. La densité de B. aegyptiaca ne varie significativement entre sites et entre secteurs. Par contre, la densité de Z. mauritiana varie significativement entre sites et entre secteurs. En effet, le site de Birni Lallé, situé dans le secteur sahélien strict, et le site de Kegil dans le secteur sahélo-soudanien ont les densités les plus élevées de Z. mauritiana avec respectivement 66,4 ± 52,5 et 77,5 ± 61,4 arbres/ha. L’analyse de la distribution des tiges par classe de diamètre montre que pour les deux espèces, les individus jeunes sont bien représentés. Cela suggère une bonne régénération de ces espèces. L’analyse de la densité et nature de régénération montre que les deux espèces se régénèrent essentiellement par drageonnage. En réponse au ramassage des fruits pour diverses utilisations, les espèces B. aegyptiaca et Z. mauritiana ont développé des stratégies alternatives de propagation en zone sahélienne. Cette aptitude à la propagation végétative permet aux deux espèces de s’adapter en zones arides caractérisées par la sécheresse et les hautes températures. MOTS CLÉS : DISTRIBUTION DES ESPÈCES LIGNEUSES, B. AEGYPTIACA, Z. MAURITIANA, MARADI, NIGER, SAHÉLO-SOUDANIEN [83] afrika focus — Volume 33, Nr. 1, 2020 — pp. 83-104 RABIOU HABOU, MOUSSA MASSAOUDOU, TOUGIANI ABASSE, MAHAMANE ALI, MAHAMANE LARWANOU & PATRICK VAN DAMME Wood species play an important role in the life of local communities. Among the species commonly used in Niger, are Balanites aegyptiaca and Ziziphus mauritiana. This species are exploited as food sources and as various medicinal products, with a consequent reduction in their populations. The present study aims to analyze the stand structure and the regeneration modes of the two species in two contrasting agro-ecological sectors of the Maradi region in south central Niger. A total of 60 surveys were delineated in natural formations dominated by these species and in agrosilvopastoral system in the Sahelian and Sahelo-Sudanian zones. On each tree, the diameter at 1.30 m from the ground, the total height and two perpendicular tree crown diameters were measured. The inventory of natural regeneration was carried out in 5 plots delineated in each plot. The mode of reproduction of the regeneration (suckers, marcots, natural seedlings) was recorded as well as the total height and the number of stems of each juvenile were. The density of B. aegyptiaca does not vary significantly between sites and between sectors. The Birni Lallé site, located in the strict Sahelian zone, and the Kegil site in the Sahelo-Sudanese sector stand out in terms of Z. mauritiana density with respectively 66.4 ± 52.5 and 77.5 ± 61.4 trees. /Ha. The analysis of the diameter class structure shows that for both species, young individuals are well represented. This suggests strong regeneration among these species. The analysis of the density and nature of regeneration shows that the two species regenerate mainly by suckering. In response to the collection of fruits for various uses by local populations, B. aegyptiaca and Z. mauritiana have developed alternative propagation strategies in the Sahelian zone. This ability to propagate vegetatively allows these two species to adapt to arid areas characterized by drought and high temperatures. KEY WORDS: DISTRIBUTION OF WOODY SPECIES, B. AEGYPTIACA, Z. MAURITIANA, MARADI, NIGER, SAHELO-SUDANESE

scholarly journals Woody species of the Miombo woodlands and geoxylic grasslands of the Cusseque area, south-central Angola

Check List ◽  
2017 ◽  
Vol 13 (1) ◽  
pp. 2030 ◽  
Author(s):  
Rasmus Revermann ◽  
Francisco Maiato Gonçalves ◽  
Amândio Luis Gomes ◽  
Manfred Finckh
Keyword(s):  
Species Composition ◽  
Woody Species ◽  
Woody Vegetation ◽  
Growth Forms ◽  
Miombo Woodlands ◽  
Vegetation Survey ◽  
Central Plateau ◽  
South Central ◽  
Independence Era ◽  
Plant Families

The species composition of the vegetation in most regions of Angola has been poorly studied and most studies date back to the pre-independence era. In this study, we provide a detailed account of the woody flora of the Miombo woodlands and geoxylic grasslands of the Cusseque study site of “The Future Okavango” (TFO) project, situated on the Angolan Central Plateau. The checklist is based on a vegetation survey using vegetation plots of 1,000 m² and also includes records from botanical collections made elsewhere at the study site. In total, we documented 154 woody species belonging to 99 genera of 37 plant families in 100 km². The study represents the first comprehensive account of the woody vegetation of the area including all habitats and growth forms.

Woody species diversity as an indicator of the forest recovery after shifting cultivation disturbance in the northern Amazon

2018 ◽  
Vol 95 ◽  
pp. 687-694 ◽  
Author(s):  
Pedro Manuel Villa ◽  
Sebastião Venâncio Martins ◽  
Silvio Nolasco de Oliveira Neto ◽  
Alice Cristina Rodrigues ◽  
Nathália Vieira Hissa Safar ◽  
...  
Keyword(s):  
Species Diversity ◽  
Shifting Cultivation ◽  
Woody Species ◽  
Forest Recovery ◽  
Woody Species Diversity

scholarly journals Representing anthropogenic gross land use change, wood harvest, and forest age dynamics in a global vegetation model ORCHIDEE-MICT v8.4.2

2018 ◽  
Vol 11 (1) ◽  
pp. 409-428 ◽  
Author(s):  
Chao Yue ◽  
Philippe Ciais ◽  
Sebastiaan Luyssaert ◽  
Wei Li ◽  
Matthew J. McGrath ◽  
...  
Keyword(s):  
Land Use ◽  
Land Use Change ◽  
Southern Africa ◽  
Shifting Cultivation ◽  
Forest Recovery ◽  
Secondary Forests ◽  
Miombo Woodlands ◽  
Agricultural Abandonment ◽  
Vegetation Model ◽  
Wood Harvest

Abstract. Land use change (LUC) is among the main anthropogenic disturbances in the global carbon cycle. Here we present the model developments in a global dynamic vegetation model ORCHIDEE-MICT v8.4.2 for a more realistic representation of LUC processes. First, we included gross land use change (primarily shifting cultivation) and forest wood harvest in addition to net land use change. Second, we included sub-grid evenly aged land cohorts to represent secondary forests and to keep track of the transient stage of agricultural lands since LUC. Combination of these two features allows the simulation of shifting cultivation with a rotation length involving mainly secondary forests instead of primary ones. Furthermore, a set of decision rules regarding the land cohorts to be targeted in different LUC processes have been implemented. Idealized site-scale simulation has been performed for miombo woodlands in southern Africa assuming an annual land turnover rate of 5 % grid cell area between forest and cropland. The result shows that the model can correctly represent forest recovery and cohort aging arising from agricultural abandonment. Such a land turnover process, even though without a net change in land cover, yields carbon emissions largely due to the imbalance between the fast release from forest clearing and the slow uptake from agricultural abandonment. The simulation with sub-grid land cohorts gives lower emissions than without, mainly because the cleared secondary forests have a lower biomass carbon stock than the mature forests that are otherwise cleared when sub-grid land cohorts are not considered. Over the region of southern Africa, the model is able to account for changes in different forest cohort areas along with the historical changes in different LUC activities, including regrowth of old forests when LUC area decreases. Our developments provide possibilities to account for continental or global forest demographic change resulting from past anthropogenic and natural disturbances.

scholarly journals Land-Use Impact on Stand Structure and Fruit Yield of Tamarindus indica L. in the Drylands of Southeastern Ethiopia

Life ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 408
Author(s):  
Gizachew Zeleke ◽  
Tatek Dejene ◽  
Wubalem Tadesse ◽  
Pablo Martín-Pinto
Keyword(s):  
Land Use ◽  
Stand Structure ◽  
Fruit Production ◽  
Tree Density ◽  
Fruit Yield ◽  
Tamarindus Indica ◽  
Land Use Types ◽  
Significant Difference ◽  
Management Plans ◽  
Baseline Information

In this study, we evaluated stand status, dendrometric variables, and fruit production of Tamarind (Tamarindus indica L.) trees growing in bushland and farmland-use types in dryland areas of Ethiopia. The vegetation survey was conducted using the point-centered quarter method. The fruit yield of 54 trees was also evaluated. Tree density and fruit production in ha were estimated. There was a significant difference in Tamarind tree density between the two land-use types (p = 0.01). The mean fruit yield of farmland trees was significantly higher than that of bushland trees. However, Tamarind has unsustainable structure on farmlands. Differences in the dendrometric characteristics of trees were also observed between the two land-use types. Predictive models were selected for Tamarind fruit yield estimations in both land-use types. Although the majority of farmland trees produced <5000 fruit year−1, the selection of Tamarind germplasm in its natural ranges could improve production. Thus, the development of management plans to establish stands that have a more balanced diameter structure and thereby ensure continuity of the population and fruit yields is required in this area, particularly in the farmlands. This baseline information could assist elsewhere in areas that are facing similar challenges for the species due to land-use change.

scholarly journals Genotyping of Two Mediterranean Trout Populations in Central-Southern Italy for Conservation Purposes Using a Rainbow-Trout-Derived SNP Array

Animals ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1803
Author(s):  
Valentino Palombo ◽  
Elena De Zio ◽  
Giovanna Salvatore ◽  
Stefano Esposito ◽  
Nicolaia Iaffaldano ◽  
...  
Keyword(s):  
Rainbow Trout ◽  
Genetic Structure ◽  
Fishery Management ◽  
Snp Array ◽  
Fine Scale ◽  
Principal Coordinates Analysis ◽  
Data Set ◽  
Management Actions ◽  
Principal Coordinates ◽  
Mediterranean Trout

Mediterranean trout is a freshwater fish of particular interest with economic significance for fishery management, aquaculture and conservation biology. Unfortunately, native trout populations’ abundance is significantly threatened by anthropogenic disturbance. The introduction of commercial hatchery strains for recreation activities has compromised the genetic integrity status of native populations. This work assessed the fine-scale genetic structure of Mediterranean trout in the two main rivers of Molise region (Italy) to support conservation actions. In total, 288 specimens were caught in 28 different sites (14 per basins) and genotyped using the Affymetrix 57 K rainbow-trout-derived SNP array. Population differentiation was analyzed using pairwise weighted FST and overall F-statistic estimated by locus-by-locus analysis of molecular variance. Furthermore, an SNP data set was processed through principal coordinates analysis, discriminant analysis of principal components and admixture Bayesian clustering analysis. Firstly, our results demonstrated that rainbow trout SNP array can be successfully used for Mediterranean trout genotyping. In fact, despite an overwhelming number of loci that resulted as monomorphic in our populations, it must be emphasized that the resulted number of polymorphic loci (i.e., ~900 SNPs) has been sufficient to reveal a fine-scale genetic structure in the investigated populations, which is useful in supporting conservation and management actions. In particular, our findings allowed us to select candidate sites for the collection of adults, needed for the production of genetically pure juvenile trout, and sites to carry out the eradication of alien trout and successive re-introduction of native trout.

scholarly journals Unraveling city-specific signature and identifying sample origin locations for the data from CAMDA MetaSUB challenge

2021 ◽  
Vol 16 (1) ◽  
Author(s):  
Runzhi Zhang ◽  
Alejandro R. Walker ◽  
Susmita Datta
Keyword(s):  
Machine Learning ◽  
Error Rates ◽  
Average Error ◽  
Importance Score ◽  
Learning Methods ◽  
Principal Coordinates Analysis ◽  
Principal Coordinates ◽  
Total Variability ◽  
The Common ◽  
Feature Selecting

Abstract Background Composition of microbial communities can be location-specific, and the different abundance of taxon within location could help us to unravel city-specific signature and predict the sample origin locations accurately. In this study, the whole genome shotgun (WGS) metagenomics data from samples across 16 cities around the world and samples from another 8 cities were provided as the main and mystery datasets respectively as the part of the CAMDA 2019 MetaSUB “Forensic Challenge”. The feature selecting, normalization, three methods of machine learning, PCoA (Principal Coordinates Analysis) and ANCOM (Analysis of composition of microbiomes) were conducted for both the main and mystery datasets. Results Features selecting, combined with the machines learning methods, revealed that the combination of the common features was effective for predicting the origin of the samples. The average error rates of 11.93 and 30.37% of three machine learning methods were obtained for main and mystery datasets respectively. Using the samples from main dataset to predict the labels of samples from mystery dataset, nearly 89.98% of the test samples could be correctly labeled as “mystery” samples. PCoA showed that nearly 60% of the total variability of the data could be explained by the first two PCoA axes. Although many cities overlapped, the separation of some cities was found in PCoA. The results of ANCOM, combined with importance score from the Random Forest, indicated that the common “family”, “order” of the main-dataset and the common “order” of the mystery dataset provided the most efficient information for prediction respectively. Conclusions The results of the classification suggested that the composition of the microbiomes was distinctive across the cities, which could be used to identify the sample origins. This was also supported by the results from ANCOM and importance score from the RF. In addition, the accuracy of the prediction could be improved by more samples and better sequencing depth.

Genetic analysis of a heritage variety collection

2018 ◽  
Vol 17 (03) ◽  
pp. 232-244 ◽  
Author(s):  
J. M. Preston ◽  
B. V. Ford-Lloyd ◽  
L. M. J. Smith ◽  
R. Sherman ◽  
N. Munro ◽  
...  
Keyword(s):  
Genetic Analysis ◽  
Group Method ◽  
Niche Markets ◽  
Principal Coordinates Analysis ◽  
Pair Group ◽  
Landrace Diversity ◽  
Principal Coordinates ◽  
Length Polymorphisms ◽  
Seed Saving ◽  
History Of

AbstractLandraces (including heritage varieties) are an important agrobiodiversity resource offering considerable value as a buffer against crop failures, as a crop for niche markets, and as a source of diversity for crop genetic improvement activities underpinning future food security. Home gardens are reservoirs of landrace diversity, but some of the accessions held in them are vulnerable or threatened with extinction. Those associated with seed saving networks have added security, for example, ca. 800 varieties are stored in the Heritage Seed Library (HSL) of Garden Organic, UK. In this study, Amplified Fragment Length Polymorphisms-based genetic analysis of accessions held in the HSL was used to (a) demonstrate the range of diversity in the collection, (b) characterize accessions to aid collection management and (c) promote broader use of the collection. In total, 171 accessions were included from six crops: Vicia faba L., Pisum sativum L., Daucus carota L., Cucumis sativus L., Lactuca sativa L. and Brassica oleracea L. var. acephala (DC.) Metzq. Average expected heterozygosity ranged from 0.18 to 0.28 in D. carota; 0.02–0.18 in P. sativum; 0.05–0.18 in L. sativa; 0.15–0.26 in B. oleracea var. acephala; 0.15–0.37 in C. sativus and 0.07–0.36 in V. faba. Genetic diversity and Fst values generally reflected the breeding system and cultivation history of the different crops. Comparisons of the diversity found in heritage varieties with that found in commercial varieties did not show a consistent pattern. Principal coordinates analysis and Unweighted Pair Group Method with Arithmetic Mean cluster analysis were used to identify four potential duplicate accession pairs.

Conservation genetics of the endangered Spotted Turtle (Clemmys guttata) illustrate the risks of “bottleneck tests”

2014 ◽  
Vol 92 (2) ◽  
pp. 149-162 ◽  
Author(s):  
Christina M. Davy ◽  
Robert W. Murphy
Keyword(s):  
Population Genetics ◽  
Freshwater Turtles ◽  
Population Declines ◽  
Isolated Populations ◽  
Principal Coordinates Analysis ◽  
Turtle Species ◽  
Principal Coordinates ◽  
Clemmys Guttata ◽  
Spotted Turtle ◽  
Cast Doubt

Studies of population genetics in turtles have suggested that turtles do not experience genetic impacts of bottlenecks as strongly as expected. However, recent studies cast doubt on two commonly used tests implemented in the program BOTTLENECK, suggesting that these findings should be re-evaluated. The Spotted Turtle (Clemmys guttata (Schneider, 1792)) is endangered both globally and within Canada, but genetic data required to develop effective recovery strategies are unavailable. Here, we conducted the first study of population genetic structure in C. guttata. We then used multiple small populations of C. guttata as replicates to test whether the commonly used program BOTTLENECK could detect the genetic signature of bottlenecks in our study populations, which are all thought to have experienced significant declines in the past 2–3 generations (75 years). Turtles (n = 256) were genotyped at 11 microsatellite loci. A suite of Bayesian population genetics analyses and a principal coordinates analysis identified a minimum of 6 distinct genetic populations and a maximum of 10 differentiated subpopulations across the sampled Canadian range of C. guttata, which corresponded to demographically independent units. BOTTLENECK failed to detect population declines. A literature review found that bottleneck tests in 17 of 18 previous genetic studies of tortoises and freshwater turtles were based on suboptimal sampling, potentially confounding their results. High retention of genetic diversity (allelic richness and heterozygosity) in isolated populations of C. guttata and other turtle species is encouraging for species recovery, but conclusions about the prevalence of genetic bottlenecks in such populations should be re-examined.

Use of multivariate methods in forest research site selection

1991 ◽  
Vol 21 (11) ◽  
pp. 1573-1580 ◽  
Author(s):  
Andrew J. Burton ◽  
Carl W. Ramm ◽  
Kurt S. Pregitzer ◽  
David D. Reed
Keyword(s):  
Site Selection ◽  
Large Scale ◽  
Multivariate Methods ◽  
Data Bases ◽  
Principal Coordinates Analysis ◽  
Research Site ◽  
Principal Coordinates ◽  
Alternative Sites ◽  
Existing Data ◽  
Selection Of

In large-scale gradient studies, selection of the best research sites is critical but time-consuming and costly. Multivariate methods can be used to quickly identify suitable sites from existing data bases. Based on a study of acid deposition in the Great Lakes region (the Michigan Gradient Study), we illustrate the use of multivariate methods in screening potential research sites for similarity. Sites were examined using cluster analysis, principal coordinates analysis, and correspondence analysis. The graphical displays generated by the multivariate methods were used to identify similar sites across the gradient. A list of 31 potential sites was reduced to 5 similar research sites and several alternative sites. The results of the multivariate methods compared well with more traditional methods of research site selection but allowed for multiple comparisons of many potential sites using a variety of data from existing data bases. By eliminating sites that are unacceptable with respect to available data, the multivariate methods reduce the number of sites that require field visitation prior to final site verification. This process represents a substantial savings in time and effort when dealing with a long list of potential research sites.

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