scholarly journals The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons)

2016 ◽  
Vol 2016 ◽  
pp. 1-9 ◽  
Author(s):  
Rascha J. M. Nuijten ◽  
Mirte Bosse ◽  
Richard P. M. A. Crooijmans ◽  
Ole Madsen ◽  
Willem Schaftenaar ◽  
...  
Keyword(s):  
Endangered Species ◽  
Conservation Management ◽  
Demographic History ◽  
Genetic Research ◽  
Critically Endangered ◽  
Island Populations ◽  
Threatened And Endangered Species ◽  
Captive Populations ◽  
In Captivity ◽  
Recent Developments

The list of threatened and endangered species is growing rapidly, due to various anthropogenic causes. Many endangered species are present in captivity and actively managed in breeding programs in which often little is known about the founder individuals. Recent developments in genetic research techniques have made it possible to sequence and study whole genomes. In this study we used the critically endangered Visayan warty pig (Sus cebifrons) as a case study to test the use of genomic information as a tool in conservation management. Two captive populations ofS. cebifronsexist, which originated from two different Philippine islands. We found some evidence for a recent split between the two island populations; however all individuals that were sequenced show a similar demographic history. Evidence for both past and recent inbreeding indicated that the founders were at least to some extent related. Together with this, the low level of nucleotide diversity compared to otherSusspecies potentially poses a threat to the viability of the captive populations. In conclusion, genomic techniques answered some important questions about this critically endangered mammal and can be a valuable toolset to inform future conservation management in other species as well.

scholarly journals Taxonomic revision of the threatened African genus Pseudohydrosme Engl. (Araceae), with P. ebo, a new, Critically Endangered species from Ebo, Cameroon

2020 ◽  
Author(s):  
Martin Cheek ◽  
Barthelemy Tchiengue ◽  
Xander van der Burgt
Keyword(s):  
Endangered Species ◽  
Protected Areas ◽  
Type Species ◽  
Conservation Management ◽  
Taxonomic Revision ◽  
Distinct Species ◽  
Critically Endangered ◽  
Critically Endangered Species ◽  
The Usa ◽  
African Genus

ABSTRACTThis is the first revision in nearly 130 years of the African genus Pseudohydrosme, formerly considered endemic to Gabon. Sister to Anchomanes, Pseudohydrosme is distinct from Anchomanes because of its 2–3-locular ovary (not unilocular), peduncle concealed by cataphylls at anthesis and far shorter than the spathe (not exposed, far exceeding the spathe), stipitate fruits and viviparous (vegetatively apomictic) roots (not sessile, roots non-viviparous). Three species, one new to science, are recognised, in two sections. Although doubt has previously been cast on the value of recognising Pseudohydrosme buettneri, of Gabon, it is here accepted and maintained as a distinct species in the monotypic section, Zyganthera. However, it is considered to be probably globally extinct. Pseudohydrosme gabunensis, type species of the genus, also Gabonese, is maintained in Sect. Pseudohydrosme together with Pseudohydrosme ebo sp.nov. of the Ebo Forest, Littoral, Cameroon, the first addition to the genus since the nineteenth century, and which extends the range of the genus 450 km north from Gabon, into the Cross-Sanaga biogeographic area. The discovery of Pseudohydrosme ebo resulted from a series of surveys for conservation management in Cameroon, and triggered this paper. All three species of Pseudohydrosme are morphologically characterised, their habitat and biogeography discussed, and their extinction risks are respectively assessed as Critically Endangered (Possibly Extinct), Endangered and Critically Endangered using the IUCN standard. Clearance of forest habitat for logging, followed by agriculture or urbanisation are major threats. One of the species may occur in a formally protected areas and is also cultivated widely but infrequently in Europe and the USA for its spectacular inflorescences.

scholarly journals Applications of emerging technologies to the study and conservation of threatened and endangered species

2006 ◽  
Vol 18 (2) ◽  
pp. 77 ◽  
Author(s):  
Budhan Pukazhenthi ◽  
Pierre Comizzoli ◽  
Alexander J. Travis ◽  
David E. Wildt
Keyword(s):  
Endangered Species ◽  
Emerging Technologies ◽  
Reproductive Technologies ◽  
Critically Endangered ◽  
Ex Situ ◽  
Laboratory Animals ◽  
Individual Species ◽  
Potential Candidate ◽  
Wildlife Species ◽  
Threatened And Endangered Species

Sustaining viable populations of all wildlife species requires the maintenance of habitat, as well as an understanding of the behaviour and physiology of individual species. Despite substantial efforts, there are thousands of species threatened by extinction, often because of complex factors related to politics, social and environmental conditions and economic needs. When species become critically endangered, ex situ recovery programmes that include reproductive scientists are the usual first line of defence. Despite the potential of reproductive technologies for rapidly increasing numbers in such small populations, there are few examples of success. This is not the result of a failure on the part of the technologies per se, but rather is due to a lack of knowledge about the fundamental biology of the species in question, information essential for allowing reproductive technologies to be effective in the production of offspring. In addition, modern conservation concepts correctly emphasise the importance of maintaining heterozygosity to sustain genetic vigour, thereby limiting the practical usefulness of some procedures (such as nuclear transfer). However, because of the goal of maintaining all extant gene diversity and because, inevitably, many species are (or will become) ‘critically endangered’, it is necessary to explore every avenue for a potential contributory role. There are many ‘emerging technologies’ emanating from the study of livestock and laboratory animals. We predict that a subset of these may have application to the rescue of valuable genes from individual endangered species and eventually to the genetic management of entire populations or species. The present paper reviews the potential candidate techniques and their potential value (and limitations) to the study and conservation of rare wildlife species.

scholarly journals Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild

2019 ◽  
Author(s):  
Emily Humble ◽  
Pavel Dobrynin ◽  
Helen Senn ◽  
Justin Chuven ◽  
Alan F. Scott ◽  
...  
Keyword(s):  
Genome Assembly ◽  
Captive Breeding ◽  
Demographic History ◽  
High Genetic Diversity ◽  
Contact Mapping ◽  
Sequencing Technologies ◽  
Captive Populations ◽  
Recent Developments ◽  
In The Wild ◽  
Negative Impacts

AbstractCaptive populations provide a valuable insurance against extinctions in the wild. However, they are also vulnerable to the negative impacts of inbreeding, selection and drift. Genetic information is therefore considered a critical aspect of conservation management planning. Recent developments in sequencing technologies have the potential to improve the outcomes of management programmes however, the transfer of these approaches to applied conservation has been slow. The scimitar-horned oryx (Oryx dammah) is a North African antelope that has been extinct in the wild since the early 1980s and is the focus of a long-term reintroduction project. To enable the selection of suitable founder individuals, facilitate post-release monitoring and improve captive breeding management, comprehensive genomic resources are required. Here, we used 10X Chromium sequencing together with Hi-C contact mapping to develop a chromosomal-level genome assembly for the species. The resulting assembly contained 29 chromosomes with a scaffold N50 of 100.4 Mb, and displayed strong chromosomal synteny with the cattle genome. Using resequencing data from six additional individuals, we demonstrated relatively high genetic diversity in the scimitar-horned oryx compared to other mammals, despite it having experienced a strong founding event in captivity. Additionally, the level of diversity across populations varied according to management strategy. Finally, we uncovered a dynamic demographic history that coincided with periods of climate variation during the Pleistocene. Overall, our study provides a clear example of how genomic data can uncover valuable insights into captive populations and contributes important resources to guide future management decisions of an endangered species.

scholarly journals Breeding Endangered Species

Oryx ◽  
1980 ◽  
Vol 15 (3) ◽  
pp. 230-232
Author(s):  
RSRF
Keyword(s):  
Endangered Species ◽  
San Diego ◽  
World Conference ◽  
Zoological Society ◽  
Captive Populations ◽  
In Captivity

The 3rd World Conference on Breeding Endangered Species in Captivity, covering both self-sustaining captive populations and re-introductions into the wild, was held in San Diego, California, from November 12 to 16,1979. It was co-sponsored by the Fauna Preservation Society, which initiated the conferences and had co-sponsored the earlier ones at Jersey Zoo in 1972 and London Zoo in 1976, and by the Zoological Society of San Diego, which made all the very efficient local arrangements.

scholarly journals Pattern and pace of morphological change due to variable human impact: the case of Japanese macaques

Primates ◽  
2021 ◽  
Author(s):  
Madeleine Geiger
Keyword(s):  
Body Size ◽  
Human Impact ◽  
Morphological Variation ◽  
Japanese Macaques ◽  
Linear Measurements ◽  
Skull Shape ◽  
Rates Of Change ◽  
Animal Populations ◽  
Captive Populations ◽  
In Captivity

AbstractHuman impact influences morphological variation in animals, as documented in many captive and domestic animal populations. However, there are different levels of human impact, and their influence on the pattern and rate of morphological variation remains unclear. This study contributes to the ongoing debate via the examination of cranial and mandibular shape and size variation and pace of change in Japanese macaques (Macaca fuscata). This species is ideal for tackling such questions because different wild, wild-provisioned, and captive populations have been monitored and collected over seven decades. Linear measurements were taken on 70 skulls from five populations, grouped into three ‘human impact groups’ (wild, wild-provisioned, and captive). This made it possible to investigate the pattern and pace of skull form changes among the human impact groups as well as over time within the populations. It was found that the overall skull shape tends to differ among the human impact groups, with captive macaques having relatively longer rostra than wild ones. Whether these differences are a result of geographic variation or variable human impact, related to nutritional supply and mechanical properties of the diet, is unclear. However, this pattern of directed changes did not seem to hold when the single captive populations were examined in detail. Although environmental conditions have probably been similar for the two examined captive populations (same captive locality), skull shape changes over the first generations in captivity were mostly different. This varying pattern, together with a consistent decrease in body size in the captive populations over generations, points to genetic drift playing a role in shaping skull shape and body size in captivity. In the captive groups investigated here, the rates of change were found to be high compared to literature records from settings featuring different degrees of human impact in different species, although they still lie in the range of field studies in a natural context. This adds to the view that human impact might not necessarily lead to particularly fast rates of change.

Where have all the sawfishes gone? Perspectives on declines of these Critically Endangered species in Sri Lanka

2021 ◽  
Author(s):  
Akshay Tanna ◽  
Daniel Fernando ◽  
Ramajeyam Gobiraj ◽  
Buddhi M. Pathirana ◽  
Sahan Thilakaratna ◽  
...  
Keyword(s):  
Sri Lanka ◽  
Endangered Species ◽  
Critically Endangered ◽  
Critically Endangered Species

scholarly journals The Oral Bacterial Community in Melanophryniscus admirabilis (Admirable Red-Belly Toads): Implications for Conservation

2021 ◽  
Vol 9 (2) ◽  
pp. 220
Author(s):  
Michele Bertoni Mann ◽  
Janira Prichula ◽  
Ícaro Maia Santos de Castro ◽  
Juliana Mello Severo ◽  
Michelle Abadie ◽  
...  
Keyword(s):  
Endangered Species ◽  
Bacterial Community ◽  
High Throughput Sequencing ◽  
Dietary Diversity ◽  
Natural Habitat ◽  
Critically Endangered ◽  
Personal Genome ◽  
Oral Microbiota ◽  
Critically Endangered Species ◽  
Anthropogenic Environment

Melanophryniscus admirabilis (admirable red-belly toad) is a microendemic and critically endangered species found exclusively along 700 m of the Forqueta River, in a fragment of the Atlantic Forest of southern Brazil. One of the greatest concerns regarding the conservation of this species is the extensive use of pesticides in areas surrounding their natural habitat. In recent years, the adaptation and persistence of animal species in human-impacted environments have been associated with microbiota. Therefore, the present study aimed to characterize the oral bacterial community of wild M. admirabilis and to address the question of how this community might contribute to this toad’s adaptation in the anthropogenic environment as well as its general metabolic capabilities. A total of 11 oral samples collected from wild M. admirabilis were characterized and analyzed via high-throughput sequencing. Fragments of the 16S rRNA variable region 4 (V4) were amplified, and sequencing was conducted using an Ion Personal Genome Machine (PGM) System with 316 chips. A total of 181,350 sequences were obtained, resulting in 16 phyla, 34 classes, 39 orders, and 77 families. Proteobacteria dominated (53%) the oral microbiota of toads, followed by Firmicutes (18%), Bacteroidetes (17%), and Actinobacteria (5%). No significant differences in microbial community profile from among the samples were reported, which suggests that the low dietary diversity observed in this population may directly influence the bacterial composition. Inferences of microbiome function were performed using PICRUSt2 software. Important pathways (e.g., xenobiotic degradation pathways for pesticides and aromatic phenolic compounds) were detected, which suggests that the bacterial communities may serve important roles in M. admirabilis health and survival in the anthropogenic environment. Overall, our results have important implications for the conservation and management of this microendemic and critically endangered species.

Sign in / Sign up

Export Citation Format

Share Document