scholarly journals [3 + 2] versus [2 + 2] Addition: A Density Functional Theory Study on the Mechanistic Aspects of Transition Metal-Assisted Formation of 1,2-Dinitrosoalkanes

2016 ◽  
Vol 2016 ◽  
pp. 1-10 ◽  
Author(s):  
Ernest Opoku ◽  
Richard Tia ◽  
Evans Adei
Keyword(s):  
Transition Metal ◽  
Density Functional ◽  
Basis Set ◽  
Functional Theory ◽  
Activation Barriers ◽  
One Step ◽  
The One ◽  
Electron Donating Groups ◽  
Very High ◽  
Addition Pathway

The pathways for the transition metal-assisted formation of 1,2-dinitrosoalkane complexes of cobalt and its congeners, have been studied using DFT/M06 with theLACVP*basis set. The activation barriers for the one-step [3 + 2] addition pathway for the formation of 1,2-dinitrosoalkanes, proposed by Bergman and Becker, are generally low compared to the activation barriers for the [2 + 2] addition to form an intermediate, which is the first of the two-step pathway proposed by Rappé and Upton, which are very high. The barriers of the rearrangement of the Rappé intermediates to the final products by reductive elimination involving the second metal-nitrogenπ-bond are also very high. The reactions of the Co complexes have lower activation barriers than Rh and Ir complexes. The barriers of the reactions involving olefins with electron-donating groups are generally lower compared to the reactions of the parent (unsubstituted) ethylene while the activation barriers for reactions of olefins with electron-withdrawing groups are generally higher compared to the parent (unsubstituted) ethylene. The one-step [3 + 2] pathway remains the most favoured irrespective of the metal centre or the nature of the olefin. The mechanism of the reaction is therefore settled in favour of the [3 + 2] addition pathway.

A density functional theory study of the mechanisms of addition of transition metal oxides ReO3L(L = Cl-, O-, OCH3, CH3) to substituted ketenes

2015 ◽  
Vol 14 (05) ◽  
pp. 1550035 ◽  
Author(s):  
Issahaku Ahmed ◽  
Richard Tia ◽  
Evans Adei
Keyword(s):  
Density Functional Theory ◽  
Transition Metal ◽  
Metal Complexes ◽  
Oxidation State ◽  
Density Functional ◽  
High Activation ◽  
Functional Theory ◽  
Activation Barriers ◽  
Reaction Energies ◽  
Addition Pathway

Ketenes are excellent precursors for catalytic asymmetric reactions, creating chiral centers mainly through addition across their C = C bonds. Density functional theory (DFT) calculations at the MO6/LACVP* and B3LYP/LACVP* levels of theory were employed in a systematic investigation of the peri-, chemo- and regio-selectivity of the addition of transition metal oxo complexes of the type ReO 3 L ( L = Cl -, O -, OCH 3, CH 3) to substituted ketenes O = C = C ( CH 3)(X) [ X = CH 3, H , CN , Ph ] with the aim of elucidating the effects of substituents on the mechanism of the reactions. The [2 + 2] addition pathway across the C = C or C = O (depending on the ligand) is the most preferred in the reactions of dimethyl ketene with all the metal complexes studied. The [2 + 2] pathway is also the most preferred in the reactions of ReO 3 Cl with all the substituted ketenes studied except when X = Cl . Thus of all the reactions studied, it is only the reaction of ReO 3 Cl with O = C = C ( CH 3)( Cl ) that prefers the [3 + 2] addition pathway. Reactions of dimethyl ketene with ReO 3 L favors addition across C = O bonds of the ketene when L = O - and CH 3 but favors addition across C = C bonds when L = OCH 3 and Cl . In the reactions of ReO 3 Cl with substituted ketenes, addition across C = O bonds is favored only when X = H while addition across C = C bonds is favored when X = CH 3, Cl , Ph , CN . The reactions of dimethyl ketene with ReO 3 L will most likely lead to the formation of an ester precursor in each case. A zwitterionic intermediate is formed in the reactions except in the reactions of [Formula: see text]. The order in the activation energies of the reactions of dimethyl ketenes with the metal complexes ReO 3 L with respect to changing ligand L is O - < CH 3 O - < Cl - < CH 3 while the order in reaction energies is CH 3 < CH 3 O - < O - < Cl -. For the reactions of substituted ketenes with ReO 3 Cl , the order in activation barriers is CH 3 < Ph < CN < Cl < H while the reaction energies follow the order Cl < CH 3 < H < Ph < CN . In the reactions of dimethyl ketenes with ReO 3 L , the trend in the selectivity of the reactions with respect to ligand L is Cl - < CH 3 O - < CH 3 < O - while the trend in selectivity is CH 3 < CN < Cl < Ph in the reactions of ReO 3 Cl with substituted ketenes. It is seen that reactions involving a change in oxidation state of metal from the reactant to product have high activation barriers while reactions that do not involve a change in oxidation state have low activation barriers. For both [3 + 2] and [2 + 2] additions, low activation barriers are obtained when the substituent on the ketene is electron-donating while high activation barriers are obtained when the substituent is electron-withdrawing.

Evaluating Transition Metal Barrier Heights with the Latest DFT Exchange–Correlation Functionals – the MOBH35 Benchmark Dataset

2019 ◽  
Author(s):  
Mark Iron ◽  
Trevor Janes
Keyword(s):  
Transition Metal ◽  
Density Functional ◽  
Computational Cost ◽  
Basis Set ◽  
Functional Theory ◽  
Exchange Correlation ◽  
Barrier Heights ◽  
Complete Basis Set ◽  
Complete Basis Set Limit ◽  
Hybrid Functionals

A new database of transition metal reaction barrier heights – MOBH35 – is presented. Benchmark energies (forward and reverse barriers and reaction energy) are calculated using DLPNO-CCSD(T) extrapolated to the complete basis set limit using a Weizmann1-like scheme. Using these benchmark energies, the performance of a wide selection of density functional theory (DFT) exchange–correlation functionals, including the latest from the Truhlar and Head-Gordon groups, is evaluated. It was found, using the def2-TZVPP basis set, that the ωB97M-V (MAD 1.8 kcal/mol), ωB97X-V (MAD 2.1 kcal/mol) and SCAN0 (MAD 2.1 kcal/mol) hybrid functionals are recommended. The double-hybrid functionals PWPB95 (MAD 1.6 kcal/mol) and B2K-PLYP (MAD 1.8 kcal/mol) did perform slightly better but this has to be balanced by their increased computational cost.

On the role of lysine in the active site Ser-X-X-Lys region of penicillin-recognizing enzymes

2010 ◽  
Vol 88 (1) ◽  
pp. 1-4
Author(s):  
Saul Wolfe ◽  
Kiyull Yang
Keyword(s):  
Active Site ◽  
Active Sites ◽  
Density Functional ◽  
Basis Set ◽  
Penicillin G ◽  
Hydroxyl Group ◽  
Functional Theory ◽  
One Step ◽  
Optimized Geometries

Using Autodock, docking of penicillin G to the crystal structures of penicillin-recognizing enzymes leads to an alignment in the active site Ser-X-X-Lys region consisting of the serine hydroxyl group, the terminal amino group of lysine, a second hydroxyl group, and the N–C=O of the β-lactam. This alignment is consistent with the notion that acylation of the serine hydroxyl group proceeds by a one-step cooperative mechanism in which C–O bond formation and proton transfer to the β-lactam nitrogen take place through a heteroatom bridge. For the cooperative ring opening of penam by two molecules of methanol and one molecule of methylamine or one molecule of water, density functional theory with the B3LYP DFT gradient-corrected functional and the 6–31G(d) basis set reproduces the alignment seen in the docked structures. Methylamine lowers the barrier calculated at MP2/6–31G(d) from the DFT-optimized geometries by 3 kcal/mol; water increases the barrier by 4 kcal/mol. The function of the conserved lysine in the active sites of penicillin-recognizing enzymes is therefore to catalyze the formation of an acyl enzyme by a cooperative mechanism.

Evaluating Transition Metal Barrier Heights with the Latest DFT Exchange–Correlation Functionals – the MOBH35 Benchmark Dataset

2019 ◽  
Author(s):  
Mark Iron ◽  
Trevor Janes
Keyword(s):  
Transition Metal ◽  
Density Functional ◽  
Computational Cost ◽  
Basis Set ◽  
Functional Theory ◽  
Exchange Correlation ◽  
Barrier Heights ◽  
Complete Basis Set ◽  
Complete Basis Set Limit ◽  
Hybrid Functionals

A new database of transition metal reaction barrier heights – MOBH35 – is presented. Benchmark energies (forward and reverse barriers and reaction energy) are calculated using DLPNO-CCSD(T) extrapolated to the complete basis set limit using a Weizmann1-like scheme. Using these benchmark energies, the performance of a wide selection of density functional theory (DFT) exchange–correlation functionals, including the latest from the Truhlar and Head-Gordon groups, is evaluated. It was found, using the def2-TZVPP basis set, that the ωB97M-V (MAD 1.8 kcal/mol), ωB97X-V (MAD 2.1 kcal/mol) and SCAN0 (MAD 2.1 kcal/mol) hybrid functionals are recommended. The double-hybrid functionals PWPB95 (MAD 1.6 kcal/mol) and B2K-PLYP (MAD 1.8 kcal/mol) did perform slightly better but this has to be balanced by their increased computational cost.

scholarly journals MNDO and DFT Computational Study on the Mechanism of the Oxidation of 1,2-Diphenylhydrazine by Iodine

2014 ◽  
Vol 2014 ◽  
pp. 1-8 ◽  
Author(s):  
Gideon A. Shallangwa ◽  
Adamu Uzairu ◽  
Victor O. Ajibola ◽  
Hamza Abba
Keyword(s):  
Reaction Mechanisms ◽  
Density Functional ◽  
Computational Study ◽  
The Other ◽  
Complex Mechanism ◽  
Functional Theory ◽  
One Step ◽  
The One ◽  
Activated Complex ◽  
Step Mechanism

The reaction mechanisms of the oxidation of 1,2-diphenylhydrazine by iodine have been examined using semiempirical and density functional theory methods, the oxidation proceeded via two independent pathways that can be separately monitored. One pathway involved the chain multistep mechanism. The other pathway occurred via a one-step mechanism in which a “cyclic” activated complex was formed which on disproportionation gave the products. The one-step “cyclic” activated complex mechanism proceeds more rapidly than the chain multistep mechanism. The results were explained by analyses based on computational energetics of the optimised reactants, intermediates, transition states, and products of the reaction of iodine with 1,2-diphenylhydrazine.

Improved H2 uptake capacity of transition metal doped benzene by boron substitution

RSC Advances ◽  
2016 ◽  
Vol 6 (52) ◽  
pp. 47033-47042 ◽  
Author(s):  
Amol Deshmukh ◽  
Ravinder Konda ◽  
Vijayanand Kalamse ◽  
Ajay Chaudhari
Keyword(s):  
Transition Metal ◽  
Density Functional ◽  
Storage Capacity ◽  
Basis Set ◽  
Uptake Capacity ◽  
Hydrogen Storage Capacity ◽  
Functional Theory ◽  
Moller Plesset ◽  
Metal Doped ◽  
Boron Substitution

The effect of boron substitution on hydrogen storage capacity of transition metal (TM) doped benzene is studied using density functional theory and the second order Møller–Plesset method with aug-cc-pVDZ basis set.

Phenanthro[9,10-a]corannulene by one-step annulative π-extension of corannulene

2017 ◽  
Vol 95 (3) ◽  
pp. 329-333 ◽  
Author(s):  
Kenta Kato ◽  
Yasutomo Segawa ◽  
Kenichiro Itami
Keyword(s):  
Crystal Structure ◽  
Density Functional ◽  
Photophysical Properties ◽  
Coupling Reaction ◽  
Density Functional Theory Calculations ◽  
Functional Theory ◽  
X Ray ◽  
Palladium Catalyzed ◽  
One Step ◽  
The One

The one-step π-extension of corannulene was achieved using a palladium-catalyzed C–H coupling reaction. The X-ray crystal structure and photophysical properties of the thus formed phenanthro[9,10-a]corannulene (1) were investigated, and the structural properties of 1 were examined by density functional theory calculations. In contrast to dibenzo[g,p]chrysene, the most stable structure of 1 was a butterfly-shaped structure, resulting from the bowl-shaped distortion of the corannulene moiety.

Effects of bimetallic doping on small cyclic and tubular boron clusters: B7M2and B14M2structures with M = Fe, Co

2015 ◽  
Vol 17 (26) ◽  
pp. 17335-17345 ◽  
Author(s):  
Hung Tan Pham ◽  
Minh Tho Nguyen
Keyword(s):  
Density Functional Theory ◽  
Transition Metal ◽  
Density Functional ◽  
Basis Set ◽  
Global Minima ◽  
Functional Theory ◽  
Boron Clusters ◽  
Transition Metal Element ◽  
Metal Element

Using density functional theory with the TPSSh functional and the 6-311+G(d) basis set, we extensively searched for the global minima of two metallic atoms doped boron clusters B6M2, B7M2, B12M2and B14M2with transition metal element M being Co and Fe.

scholarly journals Theoretical Studies on the Reactions of Aryl and Hetaryl Thioketones with Nitrilimines

2021 ◽  
Author(s):  
George Baffour Pipim ◽  
Ernest Opoku
Keyword(s):  
Density Functional ◽  
Biologically Active ◽  
Functional Theory ◽  
Atomic Spin ◽  
One Step ◽  
Synthetic Routes ◽  
The One ◽  
Total Agreement ◽  
Ethylene Derivative ◽  
Spin Densities

<p>Many synthetic routes to constructing biologically-active heterocyclic compounds are made feasible through the (3 + 2) cycloaddition 32CA reactions. Due to a large number of possible combinations of several heteroatoms from either the three-atom components (TACs) or the ethylene derivatives, the potential of the 32CA reactions in heterocyclic syntheses is versatile. Herein, the 32CA of thiophene-2-carbothialdehyde derivatives and <i>C</i>,<i>N</i>-disubstituted nitrilimines have been studied through density functional theory (DFT) calculations at the B3LYP/6-311G(d,p) level of theory. In the present study, one-step (3 + 2) and two-step (4 + 3) mechanisms of the addition of the TAC and ethylene derivative have been investigated. In all reactions considered, the one-step (3 + 2) cycloaddition is preferred over the two-step (4 + 3) cycloaddition. The TAC chemoselectively adds across the thiocarbonyl group present in the ethylene derivative in a (3 + 2) fashion to form the corresponding cycloadduct. Analysis of the electrophilic ( and nucleophilic ( Parr functions at the various reaction centers in the ethylene derivative show that the TAC adds across the atomic centers with the largest Mulliken atomic spin densities, which is in total agreement with the experimental observation. The selectivities observed in the title reaction are kinetically controlled.</p>

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