scholarly journals Use of a Novel Grammatical Inference Approach in Classification of Amyloidogenic Hexapeptides

2016 ◽  
Vol 2016 ◽  
pp. 1-8 ◽  
Author(s):  
Wojciech Wieczorek ◽  
Olgierd Unold

The present paper is a novel contribution to the field of bioinformatics by using grammatical inference in the analysis of data. We developed an algorithm for generating star-free regular expressions which turned out to be good recommendation tools, as they are characterized by a relatively high correlation coefficient between the observed and predicted binary classifications. The experiments have been performed for three datasets of amyloidogenic hexapeptides, and our results are compared with those obtained using the graph approaches, the current state-of-the-art methods in heuristic automata induction, and the support vector machine. The results showed the superior performance of the new grammatical inference algorithm on fixed-length amyloid datasets.

Author(s):  
Weiwei Yang ◽  
Haifeng Song

Recent research has shown that integration of spatial information has emerged as a powerful tool in improving the classification accuracy of hyperspectral image (HSI). However, partitioning homogeneous regions of the HSI remains a challenging task. This paper proposes a novel spectral-spatial classification method inspired by the support vector machine (SVM). The model consists of spectral-spatial feature extraction channel (SSC) and SVM classifier. SSC is mainly used to extract spatial-spectral features of HSI. SVM is mainly used to classify the extracted features. The model can automatically extract the features of HSI and classify them. Experiments are conducted on benchmark HSI dataset (Indian Pines). It is found that the proposed method yields more accurate classification results compared to the state-of-the-art techniques.


2018 ◽  
Vol 10 (7) ◽  
pp. 1119 ◽  
Author(s):  
Masoud Mahdianpari ◽  
Bahram Salehi ◽  
Mohammad Rezaee ◽  
Fariba Mohammadimanesh ◽  
Yun Zhang

Despite recent advances of deep Convolutional Neural Networks (CNNs) in various computer vision tasks, their potential for classification of multispectral remote sensing images has not been thoroughly explored. In particular, the applications of deep CNNs using optical remote sensing data have focused on the classification of very high-resolution aerial and satellite data, owing to the similarity of these data to the large datasets in computer vision. Accordingly, this study presents a detailed investigation of state-of-the-art deep learning tools for classification of complex wetland classes using multispectral RapidEye optical imagery. Specifically, we examine the capacity of seven well-known deep convnets, namely DenseNet121, InceptionV3, VGG16, VGG19, Xception, ResNet50, and InceptionResNetV2, for wetland mapping in Canada. In addition, the classification results obtained from deep CNNs are compared with those based on conventional machine learning tools, including Random Forest and Support Vector Machine, to further evaluate the efficiency of the former to classify wetlands. The results illustrate that the full-training of convnets using five spectral bands outperforms the other strategies for all convnets. InceptionResNetV2, ResNet50, and Xception are distinguished as the top three convnets, providing state-of-the-art classification accuracies of 96.17%, 94.81%, and 93.57%, respectively. The classification accuracies obtained using Support Vector Machine (SVM) and Random Forest (RF) are 74.89% and 76.08%, respectively, considerably inferior relative to CNNs. Importantly, InceptionResNetV2 is consistently found to be superior compared to all other convnets, suggesting the integration of Inception and ResNet modules is an efficient architecture for classifying complex remote sensing scenes such as wetlands.


Author(s):  
Chien-Cheng Lee ◽  
◽  
Sz-Han Chen ◽  
Yu-Chun Chiang ◽  

We propose a classifier based on the support vector machine (SVM) for automatic classification in liver disease. The SVM, stemming from statistical learning theory, involves state-of-the-art machine learning. The classifier is a part of computer-aided diagnosis (CADx), which assists radiologists in accurately diagnosing liver disease. We formulate discriminating between cysts, hepatoma, cavernous hemangioma, and normal tissue as a supervised learning problem, and apply SVM to classifying the diseases using gray level and co-occurrence matrix features and region-based shape descriptors, calculated from regions of interest (ROIs), as input. Significant features of ROI enable us to simplify SVM input space and to feed the SVM representative information. By simplifying and clarifying the diagnosis process, we separate the classification of liver disease into hierarchical multiclass classification. We use the receiver operating characteristic (ROC) curve to evaluate diagnosis performance, demonstrating the classifier’s good performance.


2011 ◽  
Vol 131 (8) ◽  
pp. 1495-1501
Author(s):  
Dongshik Kang ◽  
Masaki Higa ◽  
Hayao Miyagi ◽  
Ikugo Mitsui ◽  
Masanobu Fujita ◽  
...  

2018 ◽  
Vol 62 (5) ◽  
pp. 558-562
Author(s):  
Uchaev D.V. ◽  
◽  
Uchaev Dm.V. ◽  
Malinnikov V.A. ◽  
◽  
...  

2013 ◽  
Vol 38 (2) ◽  
pp. 374-379 ◽  
Author(s):  
Zhi-Li PAN ◽  
Meng QI ◽  
Chun-Yang WEI ◽  
Feng LI ◽  
Shi-Xiang ZHANG ◽  
...  

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