scholarly journals Bacterial Stigmergy: An Organising Principle of Multicellular Collective Behaviours of Bacteria

Scientifica ◽  
2015 ◽  
Vol 2015 ◽  
pp. 1-8 ◽  
Author(s):  
Erin S. Gloag ◽  
Lynne Turnbull ◽  
Cynthia B. Whitchurch

The self-organisation of collective behaviours often manifests as dramatic patterns of emergent large-scale order. This is true for relatively “simple” entities such as microbial communities and robot “swarms,” through to more complex self-organised systems such as those displayed by social insects, migrating herds, and many human activities. The principle of stigmergy describes those self-organised phenomena that emerge as a consequence of indirect communication between individuals of the group through the generation of persistent cues in the environment. Interestingly, despite numerous examples of multicellular behaviours of bacteria, the principle of stigmergy has yet to become an accepted theoretical framework that describes how bacterial collectives self-organise. Here we review some examples of multicellular bacterial behaviours in the context of stigmergy with the aim of bringing this powerful and elegant self-organisation principle to the attention of the microbial research community.

2004 ◽  
Vol 9 (2) ◽  
pp. 123-136 ◽  
Author(s):  
TIM BLACKWELL ◽  
MICHAEL YOUNG

Self-organisation, as manifest, for example, by swarms, flocks, herds and other collectives, is a powerful natural force, capable of generating large and sustained structures. Yet the individuals who participate in these social groups may not even be aware of the structures that they are creating. Almost certainly, these structures emerge through the application of simple, local interactions. Improvised music is an uncertain activity, characterised by a lack of top-down organisation and busy, local activity between improvisers. Emerging structures may only be perceivable at a (temporal) distance. The development of higher-level musical structure arises from interactions at lower levels, and we propose here that the self-organisation of social animals provides a very suggestive analogy. This paper builds a model of interactivity based on stigmergy, the process by which social insects communicate indirectly by environment modification. The improvisational element of our model arises from the dynamics of a particle swarm. A process called interpretation extracts musical parameters from the aural environment, and uses these parameters to place attractors in the environment of the swarm, after which stigmergy can take place. The particle positions are reinterpreted as parameterised audio events. This paper describes this model and two applications, Swarm Music and Swarm Granulator.


2009 ◽  
Vol 54 (1) ◽  
pp. 103-119
Author(s):  
Matthias Bickenbach

Eine der zentralen Fragen moderner Poetik ist, wie der Werkentstehungsprozeß von kreativer Materialfülle zur ästhetischen Bestimmtheit des Erzählten als autonomem Kunstwerk übergeht. Sten Nadolnys Poetikvorlesung gibt überraschende Einsichten in die Selbstorganisation von Steuerungsbewegungen, die noch unterhalb der Ebene des Schreibens liegen und die als Theorie der Eigenwerte in der Literatur herauszustellen ist. One of the central questions in modern poetics is, how literary writing proceeds from the creative richness of its material to an aesthetic determination as autonomous art. Sten Nadolnys lectures on his poetics enable an astonishing insight into the self-organisation of operations beyond writing, which can be considered as a theory of self-values in literature.


2013 ◽  
pp. 116-123
Author(s):  
Claire Bompaire-Evesque

This article is a inquiry about how Barrès (1862-1923) handles the religious rite of pilgrimage. Barrès stages in his writings three successive forms of pilgrimage, revealing what is sacred to him at different times. The pilgrimage to a museum or to the birthplace of an artist is typical for the egotism and the humanism of the young Barrès, expressed in the Cult of the Self (1888-1891). After his conversion to nationalism, Barrès tries to unite the sons of France and to instill in them a solemn reverence for “the earth and the dead” ; for that purpose he encourages in French Amities (1903) pilgrimages to historical places of national importance (battlefields; birthplace of Joan of Arc), building what Nora later called the Realms of Memory. The third stage of Barrès’ intellectual evolution is exemplified by The Sacred Hill (1913). In this book the writer celebrates the places where “the Spirit blows”, and proves open to a large scale of spiritual forces, reaching back to paganism and forward to integrative syncretism, which aims at unifying “the entire realm of the sacred”.


Author(s):  
Jeasik Cho

This book provides the qualitative research community with some insight on how to evaluate the quality of qualitative research. This topic has gained little attention during the past few decades. We, qualitative researchers, read journal articles, serve on masters’ and doctoral committees, and also make decisions on whether conference proposals, manuscripts, or large-scale grant proposals should be accepted or rejected. It is assumed that various perspectives or criteria, depending on various paradigms, theories, or fields of discipline, have been used in assessing the quality of qualitative research. Nonetheless, until now, no textbook has been specifically devoted to exploring theories, practices, and reflections associated with the evaluation of qualitative research. This book constructs a typology of evaluating qualitative research, examines actual information from websites and qualitative journal editors, and reflects on some challenges that are currently encountered by the qualitative research community. Many different kinds of journals’ review guidelines and available assessment tools are collected and analyzed. Consequently, core criteria that stand out among these evaluation tools are presented. Readers are invited to join the author to confidently proclaim: “Fortunately, there are commonly agreed, bold standards for evaluating the goodness of qualitative research in the academic research community. These standards are a part of what is generally called ‘scientific research.’ ”


Database ◽  
2019 ◽  
Vol 2019 ◽  
Author(s):  
Pim Bongaerts ◽  
Gonzalo Perez-Rosales ◽  
Veronica Z Radice ◽  
Gal Eyal ◽  
Andrea Gori ◽  
...  

Abstract Mesophotic coral ecosystems (MCEs) and temperate mesophotic ecosystems (TMEs) occur at depths of roughly 30–150 m depth and are characterized by the presence of photosynthetic organisms despite reduced light availability. Exploration of these ecosystems dates back several decades, but our knowledge remained extremely limited until about a decade ago, when a renewed interest resulted in the establishment of a rapidly growing research community. Here, we present the ‘mesophotic.org’ database, a comprehensive and curated repository of scientific literature on mesophotic ecosystems. Through both manually curated and automatically extracted metadata, the repository facilitates rapid retrieval of available information about particular topics (e.g. taxa or geographic regions), exploration of spatial/temporal trends in research and identification of knowledge gaps. The repository can be queried to comprehensively obtain available data to address large-scale questions and guide future research directions. Overall, the ‘mesophotic.org’ repository provides an independent and open-source platform for the ever-growing research community working on MCEs and TMEs to collate and expedite our understanding of the occurrence, composition and functioning of these ecosystems. Database URL: http://mesophotic.org/


2014 ◽  
Vol 5 ◽  
pp. 1203-1209 ◽  
Author(s):  
Hind Kadiri ◽  
Serguei Kostcheev ◽  
Daniel Turover ◽  
Rafael Salas-Montiel ◽  
Komla Nomenyo ◽  
...  

Our aim was to elaborate a novel method for fully controllable large-scale nanopatterning. We investigated the influence of the surface topology, i.e., a pre-pattern of hydrogen silsesquioxane (HSQ) posts, on the self-organization of polystyrene beads (PS) dispersed over a large surface. Depending on the post size and spacing, long-range ordering of self-organized polystyrene beads is observed wherein guide posts were used leading to single crystal structure. Topology assisted self-organization has proved to be one of the solutions to obtain large-scale ordering. Besides post size and spacing, the colloidal concentration and the nature of solvent were found to have a significant effect on the self-organization of the PS beads. Scanning electron microscope and associated Fourier transform analysis were used to characterize the morphology of the ordered surfaces. Finally, the production of silicon molds is demonstrated by using the beads as a template for dry etching.


2018 ◽  
Vol 857 ◽  
pp. 907-936 ◽  
Author(s):  
A. Cimarelli ◽  
A. Leonforte ◽  
D. Angeli

The separating and reattaching flows and the wake of a finite rectangular plate are studied by means of direct numerical simulation data. The large amount of information provided by the numerical approach is exploited here to address the multi-scale features of the flow and to assess the self-sustaining mechanisms that form the basis of the main unsteadinesses of the flows. We first analyse the statistically dominant flow structures by means of three-dimensional spatial correlation functions. The developed flow is found to be statistically dominated by quasi-streamwise vortices and streamwise velocity streaks as a result of flow motions induced by hairpin-like structures. On the other hand, the reverse flow within the separated region is found to be characterized by spanwise vortices. We then study the spectral properties of the flow. Given the strongly inhomogeneous nature of the flow, the spectral analysis has been conducted along two selected streamtraces of the mean velocity field. This approach allows us to study the spectral evolution of the flow along its paths. Two well-separated characteristic scales are identified in the near-wall reverse flow and in the leading-edge shear layer. The first is recognized to represent trains of small-scale structures triggering the leading-edge shear layer, whereas the second is found to be related to a very large-scale phenomenon that embraces the entire flow field. A picture of the self-sustaining mechanisms of the flow is then derived. It is shown that very-large-scale fluctuations of the pressure field alternate between promoting and suppressing the reverse flow within the separation region. Driven by these large-scale dynamics, packages of small-scale motions trigger the leading-edge shear layers, which in turn created them, alternating in the top and bottom sides of the rectangular plate with a relatively long period of inversion, thus closing the self-sustaining cycle.


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