scholarly journals Expression Patterns of ERF Genes Underlying Abiotic Stresses in Di-HaploidPopulus simonii×P. nigra

2014 ◽  
Vol 2014 ◽  
pp. 1-10 ◽  
Author(s):  
Shengji Wang ◽  
Wenjing Yao ◽  
Hairong Wei ◽  
Tingbo Jiang ◽  
Boru Zhou
Keyword(s):  
Drought Stress ◽  
Stress Responses ◽  
Bioinformatics Analysis ◽  
Expression Patterns ◽  
Hormonal Treatment ◽  
Nacl Stress ◽  
Rt Pcr ◽  
Populus Simonii ◽  
High Salt Condition ◽  
Leaf Tissues

176 ERF genes fromPopuluswere identified by bioinformatics analysis, 13 of these in di-haploidPopulus simonii×P. nigrawere investigate by real-time RT-PCR, the results demonstrated that 13 ERF genes were highly responsive to salt stress, drought stress and ABA treatment, and all were expressed in root, stem, and leaf tissues, whereas their expression levels were markedly different in the various tissues. In roots,PthERF99,110,119, and168were primarily downregulated under drought and ABA treatment but were specifically upregulated under high salt condition. Interestingly, in poplar stems, all ERF genes showed the similar trends in expression in response to NaCl stress, drought stress, and ABA treatment, indicating that they may not play either specific or unique roles in stems in abiotic stress responses. In poplar leaves,PthERF168was highly induced by ABA treatment, but was suppressed by high salinity and drought stresses, implying thatPthERF168participated in the ABA signaling pathway. The results of this study indicated that ERF genes could play essential but distinct roles in various plant tissues in response to different environment cues and hormonal treatment.

Genome-wide identification of citrus calmodulin-like genes and their expression in response to arbuscular mycorrhizal fungi colonization and drought

2021 ◽  
Author(s):  
Bo Shu ◽  
YaChao Xie ◽  
Fei Zhang ◽  
Dejian Zhang ◽  
Chunyan Liu ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Drought Stress ◽  
Arbuscular Mycorrhizal Fungi ◽  
Stress Responses ◽  
Mycorrhizal Fungi ◽  
Expression Patterns ◽  
Arbuscular Mycorrhizal ◽  
Biotic And Abiotic Stress ◽  
Genome Wide ◽  
A Genome

Calmodulin-like (CML) proteins represent a diverse family of protein in plants, and play significant roles in biotic and abiotic stress responses. However, the involvement of citrus CMLs in plant responses to drought stress (abiotic stress) and arbuscular mycorrhizal fungi (AMF) colonization remain relatively unknown. We characterized the citrus CML genes by analyzing the EF-hand domains and a genome-wide search, and identified a total of 38 such genes, distributed across at least nine chromosomes. Six tandem duplication clusters were observed in the CsCMLs, and 12 CsCMLs exhibited syntenic relationships with Arabidopsis thaliana CMLs. Gene expression analysis showed that 29 CsCMLs were expressed in the roots, and exhibited differential expression patterns. The regulation of CsCMLs expression was not consistent with the cis-elements identified in their promoters. CsCML2, 3, and 5 were upregulated in response to drought stress, and AMF colonization repressed the expression of CsCML7, 9, 12, 13,20, 27, 28, and 35,and induced that of CsCML1, 2, 3, 5, 8, 10, 11, 14, 15, 16, 18, 25, 30, 33, and 37. Furthermore, AMF colonization and drought stress exerted a synergistic effect, evident from the enhanced repression of CsCML7, 9, 12, 13, 27, 28, and 35 and enhanced expression of CsCML2, 3, and 5 under AMF colonization and drought stress. The present study provides valuable insights into the CsCML gene family and its responses to AMF colonization and drought stress.

scholarly journals Molecular Characterization of a Catalase Gene (VsCat) from Vicia sativa

2016 ◽  
Vol 8 (3) ◽  
pp. 66 ◽  
Author(s):  
Saeid Abu-Romman
Keyword(s):  
Stress Responses ◽  
Abiotic Stresses ◽  
Expression Patterns ◽  
Good Choice ◽  
Vicia Sativa ◽  
Rt Pcr ◽  
Reading Frame ◽  
Calmodulin Binding ◽  
Catalytic Active Site ◽  
Peroxisomal Targeting

In plants, catalases are encoded by a multigene family and are predominantly localized in the peroxisomes and glyoxysomes for scavenging H<sub>2</sub>O<sub>2</sub>. A full-length cDNA encoding <em>Catalase</em> (<em>VsCat</em>) was isolated from <em>Vicia sativa</em> using RT-PCR. The cDNA consisted of 1485 bp open reading frame (ORF) encoding a 494 amino acid polypeptide with a predicted molecular mass of 57.03 kDa and an estimated pI of 6.56. The predicted protein was highly homologues to other catalases from legume plants and contained typical catalytic active site, calmodulin binding domain, and internal peroxisomal targeting signal. Phylogenetic analysis revealed that VsCat is evolutionary close to faba bean and pea Cat1. The expression patterns of <em>VsCat</em> under different abiotic stresses and exogenous phytohormones were determined by quantitative RT-PCR<strong>. </strong>Compared to control plants, <em>VsCat</em> was differentially up-regulated in response to abiotic stresses and phytohormones. The expression analysis suggested that <em>VsCat</em> is involved in different abiotic stress responses. In future experiment, transgenic plants overexpressing <em>VsCat</em> might be a good choice to increase tolerance of forage plants to environmental stresses.

scholarly journals Physiological and Differential Proteomic Analyses of Imitation Drought Stress Response in Sorghum bicolor Root at the Seedling Stage

2020 ◽  
Vol 21 (23) ◽  
pp. 9174
Author(s):  
Hongbing Li ◽  
Yulin Li ◽  
Qingbo Ke ◽  
Sang-Soo Kwak ◽  
Suiqi Zhang ◽  
...  
Keyword(s):  
Protein Synthesis ◽  
Drought Stress ◽  
Drought Tolerance ◽  
Sorghum Bicolor ◽  
Stress Responses ◽  
Expression Patterns ◽  
Physiological Mechanism ◽  
Seedling Stage ◽  
Ros Scavenging ◽  
Root Response

Drought is one of the most important constraints on the growth and productivity of many crops, including sorghum. However, as a primary sensing organ, the plant root response to drought has not been well documented at the proteomic level. In the present study, we compared physiological alteration and differential accumulation of proteins in the roots of sorghum (Sorghum bicolor) inbred line BT×623 response to Polyethylene Glycol (PEG)-induced drought stress at the seedling stage. Drought stress (up to 24 h after PEG treatment) resulted in increased accumulation of reactive oxygen species (ROS) and subsequent lipid peroxidation. The proline content was increased in drought-stressed plants. The physiological mechanism of sorghum root response to drought was attributed to the elimination of harmful free radicals and to the alleviation of oxidative stress via the synergistic action of antioxidant enzymes, such as superoxide dismutase, peroxidase, and polyphenol oxidase. The high-resolution proteome map demonstrated significant variations in about 65 protein spots detected on Coomassie Brilliant Blue-stained 2-DE gels. Of these, 52 protein spots were identified by matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometry (MALDI-TOF-TOF MS) representing 49 unique proteins; the levels of 43 protein spots were increased, and 22 were decreased under drought condition. The proteins identified in this study are involved in a variety of cellular functions, including carbohydrate and energy metabolism, antioxidant and defense response, protein synthesis/processing/degradation, transcriptional regulation, amino acid biosynthesis, and nitrogen metabolism, which contribute jointly to the molecular mechanism of outstanding drought tolerance in sorghum plants. Analysis of protein expression patterns and physiological analysis revealed that proteins associated with changes in energy usage; osmotic adjustment; ROS scavenging; and protein synthesis, processing, and proteolysis play important roles in maintaining root growth under drought stress. This study provides new insight for better understanding of the molecular basis of drought stress responses, aiming to improve plant drought tolerance for enhanced yield.

scholarly journals Comprehensive genomic characterization of NAC transcription factor family and their response to salt and drought stress in peanut

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Cuiling Yuan ◽  
Chunjuan Li ◽  
Xiaodong Lu ◽  
Xiaobo Zhao ◽  
Caixia Yan ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Drought Stress ◽  
Stress Responses ◽  
Expression Patterns ◽  
Functional Characterization ◽  
Nac Transcription Factor ◽  
Rna Seq ◽  
A Genome ◽  
Salt And Drought Stress

Abstract Background Peanut is one of the most important oil crop species worldwide. NAC transcription factor (TF) genes play important roles in the salt and drought stress responses of plants by activating or repressing target gene expression. However, little is known about NAC genes in peanut. Results We performed a genome-wide characterization of NAC genes from the diploid wild peanut species Arachis duranensis and Arachis ipaensis, which included analyses of chromosomal locations, gene structures, conserved motifs, expression patterns, and cis-acting elements within their promoter regions. In total, 81 and 79 NAC genes were identified from A. duranensis and A. ipaensis genomes. Phylogenetic analysis of peanut NACs along with their Arabidopsis and rice counterparts categorized these proteins into 18 distinct subgroups. Fifty-one orthologous gene pairs were identified, and 46 orthologues were found to be highly syntenic on the chromosomes of both A. duranensis and A. ipaensis. Comparative RNA sequencing (RNA-seq)-based analysis revealed that the expression of 43 NAC genes was up- or downregulated under salt stress and under drought stress. Among these genes, the expression of 17 genes in cultivated peanut (Arachis hypogaea) was up- or downregulated under both stresses. Moreover, quantitative reverse transcription PCR (RT-qPCR)-based analysis revealed that the expression of most of the randomly selected NAC genes tended to be consistent with the comparative RNA-seq results. Conclusion Our results facilitated the functional characterization of peanut NAC genes, and the genes involved in salt and drought stress responses identified in this study could be potential genes for peanut improvement.

scholarly journals Genome-wide identification and expression analysis of the xyloglucan endotransglucosylase/hydrolase gene family in poplar

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Zihan Cheng ◽  
Xuemei Zhang ◽  
Wenjing Yao ◽  
Yuan Gao ◽  
Kai Zhao ◽  
...  
Keyword(s):  
Salt Stress ◽  
Stress Responses ◽  
Tissue Specificity ◽  
Expression Patterns ◽  
Evolutionary Relationship ◽  
Rna Seq ◽  
Salt Stress Response ◽  
Populus Simonii ◽  
Cis Acting ◽  
Genome Wide

Abstract Background Xyloglucan endotransglucosylase/hydrolase (XTH) family plays an important role in cell wall reconstruction and stress resistance in plants. However, the detailed characteristics of XTH family genes and their expression pattern under salt stress have not been reported in poplar. Results In this study, a total of 43 PtrXTH genes were identified from Populus simonii × Populus nigra, and most of them contain two conserved structures (Glyco_hydro_16 and XET_C domain). The promoters of the PtrXTH genes contain mutiple cis-acting elements related to growth and development and stress responses. Collinearity analysis revealed that the XTH genes from poplar has an evolutionary relationship with other six species, including Eucalyptus robusta, Solanum lycopersicum, Glycine max, Arabidopsis, Zea mays and Oryza sativa. Based on RNA-Seq analysis, the PtrXTH genes have different expression patterns in the roots, stems and leaves, and many of them are highly expressed in the roots. In addition, there are11 differentially expressed PtrXTH genes in the roots, 9 in the stems, and 7 in the leaves under salt stress. In addition, the accuracy of RNA-Seq results was verified by RT-qPCR. Conclusion All the results indicated that XTH family genes may play an important role in tissue specificity and salt stress response. This study will lay a theoretical foundation for further study on molecular function of XTH genes in poplar.

scholarly journals Genome-wide analysis of AP2/ERF Transcription Factors in sugarcane Saccharum spontaneum L. Reveals Functional Divergence During Drought, Salt Stress and Plant Hormones Treatment

2020 ◽  
Author(s):  
Piting Li ◽  
Zhe Chai ◽  
Pingping Lin ◽  
Chaohua Huang ◽  
Guoqiang Huang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Salt Stress ◽  
Drought Stress ◽  
Stress Responses ◽  
Environmental Changes ◽  
Expression Patterns ◽  
Regulatory Elements ◽  
Structure Evolution ◽  
Saccharum Spontaneum ◽  
Erf Transcription Factors

Abstract Background: APETALA2/ETHYLENE RESPONSIVE FACTOR (AP2/ERF) transcription factors play important roles in plant growth, development, metabolism, as well as in biotic and abiotic stress responses. However, there are few studies concerning AP2/ERF genes in sugarcane, which is the most critical sugar and energy crop worldwide. Results: A total of 218 AP2/ERF genes were identified in the Saccharum spontaneum genome. Phylogenetic analysis showed that these genes could be divided into four groups, including 43 AP2s, 160 ERFs, and Dehydration-responsive element-binding (DREB) factors, 11 ABI3/VPs (RAV) and 4 Soloist genes. These genes were unevenly distributed on 32 chromosomes. Analysis of the structural of SsAP2/ERF genes showed that 91 SsAP2/ERFs lacked introns. Sugarcane and sorghum have a collinear relationship between 168 SsAP2/ERF genes and sorghum AP2/ERF genes that reflects their similarity. Multiple cis-regulatory elements (CREs) are present in the SsAP2/ERF promoter, and many are related to abiotic stresses, suggesting that SsAP2/ERF activity could contribute to the adaptation of sugarcane crops to environmental changes. The tissue-specific analysis showed spatiotemporal expression of SsAP2/ERF in the stems and leaves of sugarcane at different stages of development. In 10 sugarcane samples, 39 SsAP2/ERFs were not expressed at all, whereas 58 SsAP2/ERFs were expressed in all samples. Quantitative PCR experiments showed that SsERF52 expression was up-regulated under salt stress, but suppressed under drought stress. SsSoloist4 had the most considerable upregulation in response to treatment with the exogenous hormones ABA and GA. Within 3 hours of ABA or PEG6000 treatment, SsSoloist4 expression was up-regulated, indicating that this gene could play a role in ABA and GA-associated drought stress response mechanisms. Analysis of AP2/ERF gene expression patterns under different treatments indicated that SsAP2/ERF genes play an important role in drought and salt stress responses of S. spontaneum. Conclusions: In this study, a total of 218 members of the AP2 / ERF superfamily were identified in sugarcane, and their genetic structure, evolution characteristics, and expression patterns were studied and analyzed. The results of this study provide a foundation for future analyses to elucidate the importance of AP2/ERF transcription factors in the function and molecular breeding of sugarcane.

scholarly journals De novo assembly of Amorpha fruticosa L. transcriptome in response to drought stress provides insight into the tolerance mechanisms

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11044
Author(s):  
Xinzhu Sun ◽  
Songmiao Hu ◽  
Xin Wang ◽  
He Liu ◽  
Yun wei Zhou ◽  
...  
Keyword(s):  
Salicylic Acid ◽  
Drought Stress ◽  
Drought Resistance ◽  
Stress Responses ◽  
Hormonal Regulation ◽  
De Novo ◽  
Expression Patterns ◽  
Peg 6000 ◽  
Amorpha Fruticosa ◽  
Wall Signal

Background Amorpha fruticosa L. is a deciduous shrub that is native to North America and has been introduced to China as an ornamental plant. In order to clarify the drought resistance characteristics of Amorpha fruticosa L. and excavate the related genes involved in drought resistance regulation pathway, the mechanism of drought resistance stress of Amorpha fruticosa L. was revealed by the changes of transcriptome of Amorpha fruticosa L. under drought stress.Through the changes of the transcriptome of Amorpha fruticosa L. under drought stress, the mechanism of anti-stress of Amorpha fruticosa L. could be revealed. Methods Different concentrations of polyethylene glycol-6000 (PEG-6000) was used to simulate drought stress, and transcriptomic analysis was used to reveal the changes of gene expression patterns in Amorpha fruticosa L. seedlings. Results Results showed that Amorpha fruticosa L. seedlings were seriously affected by PEG-6000. As for the differently expressed genes (DEGs), most of them were up-regulated. The additional Go and KEGG analysis results showed that DEGs were functionally enriched in cell wall, signal transduction and hormonal regulation related pathways. DEGs like AfSOD, AfHSP, AfTGA, AfbZIP and AfGRX play roles in response to drought stress. Conclusion In conclusion, Amorpha fruticosa L. seedlings were sensitive to drought, which was different from Amorpha fruticosa L. tree, and the genes functions in drought stress responses via ABA-independent pathways. The up-regulation of Salicylic acid signal related DEGs (AfTGA and AfPR-1) indicated that Salicylic acid play a key role in response to drought stress in Amorpha fruticosa L.

scholarly journals Metabolomics and proteomics reveal drought-stress responses of leaf tissues from spring-wheat

2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Anna Michaletti ◽  
Mohammad Reza Naghavi ◽  
Mahmoud Toorchi ◽  
Lello Zolla ◽  
Sara Rinalducci
Keyword(s):  
Drought Stress ◽  
Spring Wheat ◽  
Stress Responses ◽  
Leaf Tissues

scholarly journals Arbuscular Mycorrhizal Fungi Regulate MAPK Pathway Genes Expression and Enhance Drought Tolerance of Populus Simonii × P. Nigra Seedlings

2021 ◽  
Author(s):  
Jing Tao ◽  
Fengxin Dong ◽  
Yihan Wang ◽  
Hui Chen ◽  
Ming Tang
Keyword(s):  
Drought Stress ◽  
Arbuscular Mycorrhizal Fungi ◽  
Oxidative Damage ◽  
Mycorrhizal Fungi ◽  
Stomatal Closure ◽  
Expression Patterns ◽  
Soluble Sugar ◽  
Arbuscular Mycorrhizal ◽  
Populus Simonii ◽  
Amf Inoculation

Abstract Background: Arbuscular mycorrhizal fungi (AMF) form a symbiotic relationship with host plants, which can promote plants to absorb more water and nutrients, and thus improve the stress resistance of plants. Our study aimed to investigate the effects of Rhizophagus irregularis on Populus simonii × P. nigra seedlings under drought stress. Results: The experiment was a completely random design with two water conditions (well-watered or drought stress) and two AMF treatments (inoculated with or without R. irregularis). Our results showed that mycorrhizal seedlings performed less oxidative damage and stronger tolerance of drought, which recorded higher photosynthesis and less concentrations of Malondialdehyde (MDA), H2O2, and proline under drought stress versus non-mycorrhizal seedlings. Under drought stress, AMF inoculation reduced soluble sugar concentration in leaves but promoted its accumulation in roots. The superoxide dismutase (SOD) activity in leaves and roots, and catalase (CAT) activity in roots of mycorrhizal seedlings were lower than non-mycorrhizal seedlings, but CAT activity in leaves of mycorrhizal seedlings was higher than non-mycorrhizal seedlings under drought stress. Drought stress and AMF inoculation both induced the expressions of MAPKs of P. simonii × P. nigra, but the expression patterns of MAPKs under four treatments were obviously different.Conclusions: Overall, our results demonstrated that mycorrhizal seedlings had less oxidative damage and stronger tolerance to drought. MAPKs expressions of P. simonii×P. nigra (PsnMAPKs) were induced by drought stress and AMF inoculation, and the expression patterns of PsnMAPKs in response to drought stress were different between mycorrhizal and non-mycorrhizal seedlings. Non-mycorrhizal seedlings may be adapted to drought by up-regulating MAPKs expressions leading to stomatal closure. Drought stress decreased serval PsnMAPKs expressions induced by AMF inoculation, which may be associated with mycorrhizal colonization.

scholarly journals Drought Stress-Mediated Transcriptome Profile Reveals NCED as a Key Player Modulating Drought Tolerance in Populus davidiana

2021 ◽  
Vol 12 ◽  
Author(s):  
Sang-Uk Lee ◽  
Bong-Gyu Mun ◽  
Eun-Kyung Bae ◽  
Jae-Young Kim ◽  
Hyun-Ho Kim ◽  
...  
Keyword(s):  
Drought Stress ◽  
Drought Tolerance ◽  
Stress Responses ◽  
Expression Patterns ◽  
Pcr Analysis ◽  
Transcriptional Level ◽  
Rna Seq ◽  
Drought Tolerant ◽  
Populus Davidiana ◽  
Strict Regulation

Populus trichocarpa has been studied as a model poplar species through biomolecular approaches and was the first tree species to be genome sequenced. In this study, we employed a high throughput RNA-sequencing (RNA-seq) mediated leaf transcriptome analysis to investigate the response of four different Populus davidiana cultivars to drought stress. Following the RNA-seq, we compared the transcriptome profiles and identified two differentially expressed genes (DEGs) with contrasting expression patterns in the drought-sensitive and tolerant groups, i.e., upregulated in the drought-tolerant P. davidiana groups but downregulated in the sensitive group. Both these genes encode a 9-cis-epoxycarotenoid dioxygenase (NCED), a key enzyme required for abscisic acid (ABA) biosynthesis. The high-performance liquid chromatography (HPLC) measurements showed a significantly higher ABA accumulation in the cultivars of the drought-tolerant group following dehydration. The Arabidopsis nced3 loss-of-function mutants showed a significantly higher sensitivity to drought stress, ~90% of these plants died after 9 days of drought stress treatment. The real-time PCR analysis of several key genes indicated a strict regulation of drought stress at the transcriptional level in the P. davidiana drought-tolerant cultivars. The transgenic P. davidiana NCED3 overexpressing (OE) plants were significantly more tolerant to drought stress as compared with the NCED knock-down RNA interference (RNAi) lines. Further, the NCED OE plants accumulated a significantly higher quantity of ABA and exhibited strict regulation of drought stress at the transcriptional level. Furthermore, we identified several key differences in the amino acid sequence, predicted structure, and co-factor/ligand binding activity of NCED3 between drought-tolerant and susceptible P. davidiana cultivars. Here, we presented the first evidence of the significant role of NCED genes in regulating ABA-dependent drought stress responses in the forest tree P. davidiana and uncovered the molecular basis of NCED3 evolution associated with increased drought tolerance.

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