scholarly journals Profiling of Biomarkers for the Exposure of Polycyclic Aromatic Hydrocarbons: Lamin-A/C Isoform 3, Poly[ADP-ribose] Polymerase 1, and Mitochondria Copy Number Are Identified as Universal Biomarkers

2014 ◽  
Vol 2014 ◽  
pp. 1-12 ◽  
Author(s):  
Hwan-Young Kim ◽  
Hye-Ran Kim ◽  
Min-Gu Kang ◽  
Nguyen Thi Dai Trang ◽  
Hee-Jo Baek ◽  
...  

This study investigated the profiling of polycyclic aromatic hydrocarbon- (PAH-) induced genotoxicity in cell lines and zebrafish. Each type of cells displayed different proportionality of apoptosis. Mitochondrial DNA (mtDNA) copy number was dramatically elevated after 5-day treatment of fluoranthene and pyrene. The notable deregulated proteins for PAHs exposure were displayed as follows: lamin-A/C isoform 3 and annexin A1 for benzopyrene; lamin-A/C isoform 3 and DNA topoisomerase 2-alpha for pentacene; poly[ADP-ribose] polymerase 1 (PARP-1) for fluoranthene; and talin-1 and DNA topoisomerase 2-alpha for pyrene. Among them, lamin-A/C isoform 3 and PARP-1 were further confirmed using mRNA and protein expression study. Obvious morphological abnormalities including curved backbone and cardiomegaly in zebrafish were observed in the 54 hpf with more than 400 nM of benzopyrene. In conclusion, the change of mitochondrial genome (increased mtDNA copy number) was closely associated with PAH exposure in cell lines and mesenchymal stem cells. Lamin-A/C isoform 3, talin-1, and annexin A1 were identified as universal biomarkers for PAHs exposure. Zebrafish, specifically at embryo stage, showed suitablein vivomodel for monitoring PAHs exposure to hematopoietic tissue and other organs.

Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 4690-4690
Author(s):  
Hwan-Young Kim ◽  
Hye-Ran Kim ◽  
Stephanie J. Won ◽  
Hee-Jo Baek ◽  
Jae-Dong Moon ◽  
...  

Abstract Abstract 4690 Background: Polycyclic aromatic hydrocarbons (PAHs) are one of the major environmental hazardous compounds in living environment generated by combustion of fossil fuels. PAHs are classified as carcinogens by International Agency for Research on Cancer. However, the study on biomarkers and biological effect of PAHs has not been thoroughly studied in peripheral blood stem cells (PBSC) and leukemia cell lines. Therefore, the present study investigated biological characteristics and biomarkers in hematopoietic cells and leukemia cell lines after exposure of PAHs. Materials and Methods: Cytokine stimulation (10 mg/kg/d) was used in a 28-year-old healthy male donor from 5 d before to 2 d after. One to three apheresis procedures were planned for on day 0, day 1, and day 2, using a Baxter CS-3000 PLUS machine (Baxter Healthcare) and a COBE-Spectra (Gambro). PBSC and three leukemia cell lines (THP-1, Molt-4 and K562) were cultured in RPMI media containing 10% fetal bovine serum. In this study, four types of PAHs- Benzopyrene (BaP), Pentacene, Fluoranthene and Pyrene -were added in the cell culture media with 100μM concentration (Sigma-Aldrich, USA). Cell count was performed using an automated blood cell analyzer. Viability and apoptosis were assessed by trypan blue dye exclusion test and flowcytometry based on annexin V staining protocol. Cytotoxicity was determined by the water-soluble tetrazolium salts -1 assay. Proteomics in mitochondrial-rich cytoplasmic fraction was performed using nano-LC-ESI-MS/MS analysis. The acquired fragment spectra were searched in the BioWorksBrowser (version Rev. 3.3.1 SP1, Thermo Fisher Scientific Inc., CA) with the SEQUEST search engines against National Center for Biotechnology Information (http://www.ncbi.nlm.nih. gov/) non-redundant human database. Results: Depending on the type of PAHs, each cell count showed different aspects. In comparison to control group, Fluoranthene displayed profound significant reduction in cell count, especially in PBSC and THP-1 cells. Viability decreased significantly after two days of exposuring into Fluoranthene. On the third day of PAHs exposure, viability reduced remarkably in all the cells. Each type of cell lines displayed different proportionality of apoptosis. Several hundreds of PAHs exposure biomarkers were identified in comparison to control group. The notable biomarkers for PAHs exposure were displayed as following: prelamin-A/C isoform 3 and annexin A1 for BaP; prelamin-A/C isoform 3 and DNA topoisomerase 2-alpha for Pentacene; poly [ADP-ribose] polymerase 1 for Fluoranthene; talin-1 and DNA topoisomerase 2-alpha for Pyrene. By using Gene Ontology tool, we further identified protein candidate biomarkers for PAH exposure. Conclusion: This study shows new biomarkers and biological characteristics of polycyclic aromatic hydrocarbons exposure in hematopoietic tissue. Specifically, talin-1 was identified as universal biomarker for PAHs exposure. Disclosures: No relevant conflicts of interest to declare.


2000 ◽  
Vol 11 (4) ◽  
pp. 1471-1485 ◽  
Author(s):  
Yingying Tang ◽  
Eric A. Schon ◽  
Ekkehard Wilichowski ◽  
Martel E. Vazquez-Memije ◽  
Edgar Davidson ◽  
...  

Mitochondria from patients with Kearns–Sayre syndrome harboring large-scale rearrangements of human mitochondrial DNA (mtDNA; both partial deletions and a partial duplication) were introduced into human cells lacking endogenous mtDNA. Cytoplasmic hybrids containing 100% wild-type mtDNA, 100% mtDNA with partial duplications, and 100% mtDNA with partial deletions were isolated and characterized. The cell lines with 100% deleted mtDNAs exhibited a complete impairment of respiratory chain function and oxidative phosphorylation. In contrast, there were no detectable respiratory chain or protein synthesis defects in the cell lines with 100% duplicated mtDNAs. Unexpectedly, the mass of mtDNA was identical in all cell lines, despite the fact that different lines contained mtDNAs of vastly different sizes and with different numbers of replication origins, suggesting that mtDNA copy number may be regulated by tightly controlled mitochondrial dNTP pools. In addition, quantitation of mtDNA-encoded RNAs and polypeptides in these lines provided evidence that mtDNA gene copy number affects gene expression, which, in turn, is regulated at both the post-transcriptional and translational levels.


Blood ◽  
2013 ◽  
Vol 122 (21) ◽  
pp. 1221-1221
Author(s):  
Hwan-Young Kim ◽  
Hye-Ran Kim ◽  
Trang Nguyen Thi Dai ◽  
Hee-Jo Baek ◽  
Jae-Dong Moon ◽  
...  

Abstract Background Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous environmental pollutants that are potent mutagens and classified as carcinogens by International Agency for Research on Cancer. However, genotoxic effect of PAHs exposure has not been thoroughly presented in peripheral blood stem cells (PBSC) and bone marrow-mesenchymal stem cells (BM-MSC). Therefore, this study investigated the profiling of PAHs-induced genotoxicity in hematopoietic and mesenchymal stem cells using primary human-derived PBSC and BM-MSC. Zebrafish (Danio rerio) as in vivo vertebrate model was used for monitoring genotoxicity of PAHs exposure to the PBSC and BM-MSC. Materials and Methods Cytokine stimulation (10 mg/kg/d) was used in three healthy male donors from 5 d before to 2 d after. One to three apheresis procedures were planned for on day 0, day 1, and day 2, using a Baxter CS-3000 PLUS machine (Baxter Healthcare) and a COBE-Spectra (Gambro) for obtaining PBSC. Previous published protocol was used for the isolation and characterization of BM-MSCs. For in vitro cell line study, cells were cultured and maintained in RPMI media containing 10% fetal bovine serum and four types of PAHs- benzopyrene (BaP), pentacene, fluoranthene and pyrene - were added in the cell culture media with 100µM concentration. Cellular level of hydrogen peroxide as a representative marker of reactive oxygen species was measured using enzyme immunoassay. Mitochondrial mass, membrane potential and mitochondrial DNA (mtDNA) copy number were measured using MitoTracker Green, Red probes and real time PCR, respectively. Proteomics in mitochondrial-rich cytoplasmic fraction was performed using nano-LC-ESI-MS/MS analysis with the BioWorksBrowser (Thermo Fisher Scientific Inc., CA) and the SEQUEST search engines. For in vivo model study, Zebrafish embryos 30h post-fertilization (hpf) were exposed to BaP at concentrations of 200, 400, 600, 800 and 1000nM. Seventy embryos were cultured in 40 mL BaP solution in each petri dish, and there were three replicates for each of the five treatments. Embryos were collected at 54 hpf, 78hpf and 102hpf for the study of genotoxicity and morphological changes. Results According to each type of PAHs, the results of cell biology study showed different aspects: fluoranthene displayed profound significant reduction in cell count, especially in PBSC and viability decreased substantially after two days of exposuring into fluoranthene. On the third day of PAHs exposure, viability reduced remarkably in all the cells. Each type of cells displayed different proportionality of apoptosis. The proportion of apoptosis and cellular ROS level were increased in time- and dose-dependent manner after 3 days of PAHs treatment with different degree levels according to the type of PAHs. Mitochondrial contents and membrane potentials were increased with different pattern: mtDNA copy number and mass were dramatically elevated after 5-day treatment of fluoranthene and pyrene in both stem cells and in vivo Zebrafish model. Several hundreds of cellular proteins in mitochondrial-rich cytoplasmic fraction were profoundly deregulated in comparison to control group. The notable deregulated proteins for PAHs exposure were displayed as following: prelamin-A/C isoform 3 and annexin A1 for benzopyrene; prelamin-A/C isoform 3 and DNA topoisomerase 2-alpha for pentacene; poly [ADP-ribose] polymerase 1 (PARP-1) for fluoranthene; talin-1 and DNA topoisomerase 2-alpha for pyrene. Among them, prelamin-A/C isoform 3 and PARP-1 were further confirmed using mRNA and protein expression study. Obvious morphological abnormalities in the general shape of Zebrafish, including curved backbone and cardiomegaly, were observed in the 54 hpf with more than 400 nM of BaP. Conclusion This study showed global profiling of toxic changes of PAHs in PBSC and BM-MSC as well as Zebrafish model. The change of mitochondrial genome (increased mtDNA copy number and mass) was closely associated with PAH exposure in hematopoietic and mesenchymal stem cells. Among cellular proteins, prelamin-A/C isoform 3, talin-1 and annexin A1 were remarkably elevated after exposure of PAHs, this may play a role as biomarkers for PAHs exposure. Zebrafish, specifically at embryo stage, showed suitable in vivo model for monitoring PAHs exposure to hematopoietic tissue and other organs. Disclosures: No relevant conflicts of interest to declare.


2019 ◽  
Vol 21 (Supplement_6) ◽  
pp. vi209-vi209
Author(s):  
Palavalasa Sravya ◽  
Vidya Nimbalkar ◽  
Nandaki Kanuri ◽  
Harsha Sugur ◽  
Shilpa Rao ◽  
...  

Abstract BACKGROUND Investigation of mitochondrial DNA (mtDNA) content in glioblastoma has gathered speed in recent years. Our study focusses on the effect of mtDNA content depletion on treatment response in glioblastoma. MATERIALS AND METHODS The study consists of a survival cohort (n=130), a recurrent cohort (32 pairs) and 35 non neoplastic control brain tissues. Malignant glioma cell lines, U87 and LN229 were utilized for radiation biology experiments. Patient tumor tissue was molecularly characterized for IDH, ATRX and TERT promoter mutations, MGMT promoter methylation and EGFR amplification using established methods. Relative quantification of mtDNA content was performed using quantitative real time PCR. Ethidium bromide was used to deplete mtDNA in U87 and LN229 cells. Clonogenic assay and MTT assay were performed to assess sensitivity to radiation and chemotherapy. RESULTS mtDNA content was lower in glioblastoma than in controls. Lower range of mtDNA copy number was associated with poor overall survival (p=0.033) and with markers of tumor aggressiveness like wild type IDH (p=0.02), unmethylated MGMT promoter, amplified EFGR and mutated TERT promoter. Out of 32 recurrent GBM patients, only 19 had received radiation treatment (RT) between the two surgeries and in these patients, mtDNA content was significantly higher in the recurrent tumor when compared to the primary tumor(p=0.01). U87 and LN229 cells showed a higher mtDNA copy number post irradiation (p=0.002). mtDNA depleted U87 and LN229 cells showed higher survival fraction post radiation exposure when compared to parent lines. The IC50 of TMZ was also higher for mtDNA depleted U87 and LN229 cells. CONCLUSION Low mtDNA content is associated with poor survival and aggressive tumor markers in glioblastoma. Lowering the mtDNA content in GBM cells induces radiation resistance as well as resistance to chemotherapy. Irradiation leads to increase in mitochondrial DNA content in both patient samples as well as malignant glioma cell lines.


PLoS ONE ◽  
2016 ◽  
Vol 11 (3) ◽  
pp. e0152705 ◽  
Author(s):  
Domenico Spadafora ◽  
Natalia Kozhukhar ◽  
Mikhail F. Alexeyev

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