scholarly journals Inheritance of Evolved Glyphosate Resistance in a North Carolina Palmer Amaranth (Amaranthus palmeri) Biotype

2012 ◽  
Vol 2012 ◽  
pp. 1-7 ◽  
Author(s):  
Aman Chandi ◽  
Susana R. Milla-Lewis ◽  
Darci Giacomini ◽  
Philip Westra ◽  
Christopher Preston ◽  
...  
Keyword(s):  
North Carolina ◽  
Dose Response ◽  
Genome Analysis ◽  
Copy Number ◽  
Single Gene ◽  
Nuclear Genome ◽  
Glyphosate Resistance ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Dose Responses

Inheritance of glyphosate resistance in a Palmer amaranth biotype from North Carolina was studied. Glyphosate rates for 50% survival of glyphosate-resistant (GR) and glyphosate-susceptible (GS) biotypes were 1288 and 58 g ha−1, respectively. These values for F1 progenies obtained from reciprocal crosses (GR×GSandGS×GRwere 794 and 501 g ha−1, respectively. Dose response of F1 progenies indicated that resistance was not fully dominant over susceptibility. Lack of significant differences between dose responses for reciprocal F1 families suggested that genetic control of glyphosate resistance was governed by nuclear genome. Analysis of F1 backcross (BC1F1) families showed that 10 and 8 BC1F1 families out of 15 fitted monogenic inheritance at 2000 and 3000 g ha−1glyphosate, respectively. These results indicate that inheritance of glyphosate resistance in this biotype is incompletely dominant, nuclear inherited, and might not be consistent with a single gene mechanism of inheritance. Relative 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) copy number varied from 22 to 63 across 10 individuals from resistant biotype. This suggested that variableEPSPScopy number in the parents might be influential in determining if inheritance of glyphosate resistance is monogenic or polygenic in this biotype.

Susceptibility of Palmer amaranth (Amaranthus palmeri) to herbicides in accessions collected from the North Carolina Coastal Plain

Weed Science ◽  
2020 ◽  
Vol 68 (6) ◽  
pp. 582-593
Author(s):  
Denis J. Mahoney ◽  
David L. Jordan ◽  
Nilda Roma-Burgos ◽  
Katherine M. Jennings ◽  
Ramon G. Leon ◽  
...  
Keyword(s):  
North Carolina ◽  
Dose Response ◽  
Coastal Plain ◽  
Weed Management ◽  
Acetolactate Synthase ◽  
Fold Increase ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Sites Of Action ◽  
Two Populations

AbstractPalmer amaranth (Amaranthus palmeri S. Watson) populations resistant to acetolactate synthase (ALS)-inhibiting herbicides and glyphosate are fairly common throughout the state of North Carolina (NC). This has led farm managers to rely more heavily on herbicides with other sites of action (SOA) for A. palmeri control, especially protoporphyrinogen oxidase and glutamine synthetase inhibitors. In the fall of 2016, seeds from A. palmeri populations were collected from the NC Coastal Plain, the state’s most prominent agricultural region. In separate experiments, plants with 2 to 4 leaves from the 110 populations were treated with field use rates of glyphosate, glufosinate-ammonium, fomesafen, mesotrione, or thifensulfuron-methyl. Percent visible control and survival were evaluated 3 wk after treatment. Survival frequencies were highest following glyphosate (99%) or thifensulfuron-methyl (96%) treatment. Known mutations conferring resistance to ALS inhibitors were found in populations surviving thifensulfuron-methyl application (Ala-122-Ser, Pro-197-Ser, Trp-574-Leu, and/or Ser-653-Asn), in addition to a new mutation (Ala-282-Asp) that requires further investigation. Forty-two populations had survivors after mesotrione application, with one population having 17% survival. Four populations survived fomesafen treatment, while none survived glufosinate. Dose–response studies showed an increase in fomesafen needed to kill 50% of two populations (LD50); however, these rates were far below the field use rate (less than 5 g ha−1). In two populations following mesotrione dose–response studies, a 2.4- to 3.3-fold increase was noted, with LD90 values approaching the field use rate (72.8 and 89.8 g ha−1). Screening of the progeny of individuals surviving mesotrione confirmed the presence of resistance alleles, as there were a higher number of survivors at the 1X rate compared with the parent population, confirming resistance to mesotrione. These data suggest A. palmeri resistant to chemistries other than glyphosate and thifensulfuron-methyl are present in NC, which highlights the need for weed management approaches to mitigate the evolution and spread of herbicide-resistant populations.

Variable Inheritance of AmplifiedEPSPSGene Copies in Glyphosate-Resistant Palmer Amaranth (Amaranthus palmeri)

Weed Science ◽  
2018 ◽  
Vol 67 (2) ◽  
pp. 176-182 ◽  
Author(s):  
Darci A. Giacomini ◽  
Philip Westra ◽  
Sarah M. Ward
Keyword(s):  
Copy Number ◽  
Single Gene ◽  
Gene Copy Number ◽  
Transgressive Segregation ◽  
Palmer Amaranth ◽  
Gene Copy ◽  
Amaranthus Palmeri ◽  
Gene Copies ◽  
Central United States ◽  
Free Environment

AbstractGlyphosate-resistant (GR) Palmer amaranth (Amaranthus palmeriS. Watson) is considered one of the most troublesome weeds in the southern and central United States, but results of previous research to determine the mode of inheritance of this trait have been conflicting and inconclusive. In this study, we examined segregation patterns ofEPSPSgene-copy numbers in F1and F2generations ofA. palmeriand found no evidence of a Mendelian single-gene pattern of inheritance. Transgressive segregation for copy number was exhibited by several F1and all of the F2families, most likely the product ofEPSPScopy-number variation within each plant. This variation was confirmed by assaying gene-copy number across clonal generations and among individual shoots on the same plant, demonstrating thatEPSPSamplification levels vary significantly within a single plant. Increases and decreases in copy number occurred in a controlled, stress-free environment in the absence of glyphosate, indicating thatEPSPSgene amplification is a random and variable process within the plant. The ability ofA. palmerito gain or loseEPSPSgene copies is a valuable adaptive trait, allowing this species to respond rapidly to selection pressures and changing environments.

Variable Tolerance among Palmer Amaranth (Amaranthus palmeri) Biotypes to Glyphosate, 2,4-D Amine, and Premix Formulation of Glyphosate plus 2,4-D Choline (Enlist Duo®) Herbicide

Weed Science ◽  
2017 ◽  
Vol 65 (6) ◽  
pp. 787-797 ◽  
Author(s):  
Douglas J. Spaunhorst ◽  
William G. Johnson
Keyword(s):  
Dose Response ◽  
Active Ingredient ◽  
Maximum Rate ◽  
Glyphosate Resistance ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Whole Plant

Adoption of soybean that is resistant to 2,4-D will result in more use of glyphosate plus 2,4-D premixes and tank mixtures. Preliminary whole-plant greenhouse assays confirm most Palmer amaranth populations found in Indiana are glyphosate-resistant (GR), and some biotypes exhibit tolerance to 2,4-D amine. Dose–response experiments were conducted to determine the level of glyphosate resistance and 2,4-D amine tolerance in four Palmer amaranth biotypes. A premix formulation of glyphosate plus 2,4-D choline was also evaluated. The R1, R2, and R3 biotypes were 31- to 66-fold more resistant to glyphosate (R:S ratio) than the S1 biotype based on the herbicide dose to cause 90% mortality (LD90). The maximum POST rate of the premix formulation of Enlist Duo®labeled in ‘Enlist®’soybean is 2,195 g ae ha−1. When separated by active ingredient, the maximum POST rate of Enlist Duo®is equivalent to 1,141 and 1,054 g ae ha−1of glyphosate and 2,4-D choline, respectively. In the absence of glyphosate, the maximum rate of 2,4-D (1,054 g ae ha−1) in the premix formulation of Enlist Duo®controlled S1, R2, and R3 biotypes, but failed to control all plants from the R1 biotype. Estimates for LD90showed the R1 biotype was 3-fold more tolerant than the S1 biotype to 2,4-D amine. However, no plants survived the 1,155 g ae ha−1(600 g ae ha−1of glyphosate plus 555 g ae ha−12,4-D) treatment with the premix formulation of glyphosate plus 2,4-D choline. Overall, results from this experiment suggest GR Palmer amaranth that also exhibits increased tolerance to 2,4-D amine will be difficult to control with glyphosate or 2,4-D alone, but can be controlled POST with Enlist Duo®at lower than labeled field rates (1,618 to 2,195 g ae ha−1).

scholarly journals Distribution of Glyphosate- and Thifensulfuron-Resistant Palmer Amaranth (Amaranthus palmeri) in North Carolina

2014 ◽  
Vol 2014 ◽  
pp. 1-7 ◽  
Author(s):  
Amy H. Poirier ◽  
Alan C. York ◽  
David L. Jordan ◽  
Aman Chandi ◽  
Wesley J. Everman ◽  
...  
Keyword(s):  
North Carolina ◽  
Crop Production ◽  
Error Variance ◽  
Glyphosate Resistance ◽  
Palmer Amaranth ◽  
Multiple Resistance ◽  
Amaranthus Palmeri ◽  
Row Crop ◽  
Resistance Trait ◽  
Als Inhibitor

Glyphosate resistance in Palmer amaranth was first confirmed in North Carolina in 2005. A survey that year indicated 17 and 18% of 290 populations sampled were resistant to glyphosate and thifensulfuron, respectively. During the fall of 2010, 274 predetermined sites in North Carolina were surveyed to determine distribution of Palmer amaranth and to determine if and where resistance to fomesafen, glufosinate, glyphosate, and thifensulfuron occurred. Palmer amaranth was present at 134 sites. When mortality for each biotype was compared to a known susceptible biotype for each herbicide within a rate, 93 and 36% of biotypes were controlled less by glyphosate (840 g ae ha−1) and thifensulfuron (70 g ai ha−1), respectively. This approach may have underestimated resistance for segregating populations due to lack of homogeneity of the herbicide resistance trait and its contribution to error variance. When mortality and visible control were combined, 98% and 97% of the populations were resistant to glyphosate and the ALS inhibitor thifensulfuron, respectively, and 95% of the populations expressed multiple resistance to both herbicides. This study confirms that Palmer amaranth is commonly found across the major row crop production regions of North Carolina and that resistance to glyphosate and ALS-inhibiting herbicides is nearly universal. No resistance to fomesafen or glufosinate was observed.

scholarly journals Influence of Soybean (Glycine max) Population and Herbicide Program on Palmer Amaranth (Amaranthus palmeri) Control, Soybean Yield, and Economic Return

ISRN Agronomy ◽  
2012 ◽  
Vol 2012 ◽  
pp. 1-8
Author(s):  
Amy E. Hoffner ◽  
David L. Jordan ◽  
Alan C. York ◽  
E. James Dunphy ◽  
Wesley J. Everman
Keyword(s):  
North Carolina ◽  
Glycine Max ◽  
Glyphosate Resistance ◽  
Palmer Amaranth ◽  
Production Costs ◽  
Soybean Plant ◽  
Amaranthus Palmeri ◽  
Economic Return ◽  
Soybean Yield ◽  
Herbicide Resistant

Palmer amaranth (Amaranthus palmeri S. Wats) has become one of the most prominent and difficult weeds to control in soybean (Glycine max (L.) Merr.) in North Carolina. A survey was conducted in North Carolina during fall 2010 to estimate the magnitude of this problem. Palmer amaranth was present in 39% of 2,512 fields representing 0.24% of soybean ha in North Carolina. In recent years, growers have reduced soybean seeding rates in an effort to decrease production costs associated with technology fees. However, given the increase in prevalence of Palmer amaranth and the difficultly in controlling this weed due to herbicide resistance, growers may need to reconsider reductions in seeding rates. Therefore, research was conducted during 2010 and 2011 to determine if Palmer amaranth control, soybean yield, and economic return were affected by soybean plant population, preemergence (PRE) and postemergence (POST) herbicides, and herbicide resistant traits (glufosinate-resistant and glyphosate-resistant cultivars). Applying PRE or POST herbicides and increasing soybean population increased Palmer amaranth control, soybean yield, and economic return when compared with POST herbicides only or when lower soybean populations were present. Efficacy of glufosinate and glyphosate did not vary in most instances, most likely because these herbicides were applied timely, and the frequency of glyphosate resistance did not exceed 10% in these fields.

EPSPSGene Amplification Primarily Confers Glyphosate Resistance among Arkansas Palmer amaranth (Amaranthus palmeri) Populations

Weed Science ◽  
2018 ◽  
Vol 66 (3) ◽  
pp. 293-300 ◽  
Author(s):  
Shilpa Singh ◽  
Vijay Singh ◽  
Amy Lawton-Rauh ◽  
Muthukumar V. Bagavathiannan ◽  
Nilda Roma-Burgos
Keyword(s):  
Copy Number ◽  
Gene Copy Number ◽  
Glyphosate Resistance ◽  
Resistance Mechanisms ◽  
Palmer Amaranth ◽  
Gene Copy ◽  
Amaranthus Palmeri ◽  
Resistance Level ◽  
Relative Copy Number ◽  
Gene Copies

AbstractResearch was conducted to determine whether resistance to glyphosate among Palmer amaranth (Amaranthus palmeriS. Watson) populations within the U.S. state of Arkansas was due solely to increasedEPSPSgene copy number and whether gene copy number is correlated with resistance level to glyphosate. One hundred and fifteenA. palmeriaccessions were treated with 840 g ae ha−1glyphosate. Twenty of these accessions, selected to represent a broad range of responses to glyphosate, underwent further testing. Seven of the accessions were controlled with this dose; the rest were resistant. The effective dose to cause 50% injury (ED50) for susceptible accessions ranged from 28 to 207 g ha−1. The glyphosate-resistant (GR) accessions had ED50values ranging from 494 to 1,355 g ha−1, a 3- to 48-fold resistance level compared with the susceptible standard (SS). The 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene relative copy number was determined for 20 accessions, 4 plants accession−1. Resistant plants from five GR accessions (38% of resistant plants tested) did not have increasedEPSPSgene copies. Resistant plants from the remaining eight GR accessions (62% of resistant plants tested) had 19 to 224 moreEPSPSgene copies than the SS. Among the accessions tested, injury declined 4% with every additionalEPSPScopy. ED50values were directly correlated withEPSPScopy number. The highly resistant accession MIS11-B had an ED50of 1,355 g ha−1and 150 gene copies. Partial sequences ofEPSPSfrom GR accessions withoutEPSPSamplification did not contain any of the known resistance-conferring mutations. Nearly 40% of GR accessions putatively harbor non–target site resistance mechanisms. Therefore, elevatedEPSPSgene copy number is associated with glyphosate resistance amongA. palmerifrom Arkansas.

scholarly journals Influence of Selected Fungicides on Efficacy of Clethodim and 2,4-DB

2012 ◽  
Vol 39 (2) ◽  
pp. 121-126 ◽  
Author(s):  
Gurinderbir S. Chahal ◽  
David L. Jordan ◽  
Barbara B. Shew ◽  
Rick L. Brandenburg ◽  
James D. Burton ◽  
...  
Keyword(s):  
North Carolina ◽  
Sampling Interval ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Solution Ph ◽  
Affect Control ◽  
Solution Preparation ◽  
Positive Correlations ◽  
Sampling Times ◽  
Large Crabgrass

Abstract A range of fungicides and herbicides can be applied to control pests and optimize peanut yield. Experiments were conducted in North Carolina to define biological and physicochemical interactions when clethodim and 2,4-DB were applied alone or with selected fungicides. Pyraclostrobin consistently reduced large crabgrass [Digitaria sanguinalis (L.) Scop.] control by clethodim. Chlorothalonil and tebuconazole plus trifloxystrobin reduced large crabgrass control by clethodim in two of four experiments while prothioconazole plus tebuconazole and flutriafol did not affect control. Palmer amaranth [Amaranthus palmeri S. Wats] control by 2,4-DB was not affected by these fungicides. Although differences in spray solution pH were noted among mixtures of clethodim plus crop oil concentrate or 2,4-DB and fungicides, the range of pH was 4.40 to 4.92 and 6.72 to 7.20, respectively, across sampling times of 0, 6, 24, and 72 h after solution preparation. Permanent precipitates were formed when clethodim, crop oil concentrate, and chlorothalonil were co-applied at each sampling interval. Permanent precipitates were not observed when clethodim and crop oil concentrate were included with other fungicides or when 2,4-DB was mixed with fungicides. Significant positive correlations were noted for Palmer amaranth control by 2,4-DB and solution pH but not for clethodim and solution pH.

Susceptibility of palmer amaranth ( Amaranthus palmeri ) accessions in north carolina to Atrazine, Dicamba, S ‐metolachlor, and 2,4‐D

cftm ◽  
2021 ◽  
Author(s):  
Levi D. Moore ◽  
Katherine M. Jennings ◽  
David W. Monks ◽  
David L. Jordan ◽  
Michael D. Boyette ◽  
...  
Keyword(s):  
North Carolina ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri

Critical Period for Palmer Amaranth (Amaranthus palmeri) Control in Pickling Cucumber

2018 ◽  
Vol 32 (5) ◽  
pp. 586-591
Author(s):  
Samuel J. McGowen ◽  
Katherine M. Jennings ◽  
Sushila Chaudhari ◽  
David W. Monks ◽  
Jonathan R. Schultheis ◽  
...  
Keyword(s):  
North Carolina ◽  
Critical Period ◽  
Relative Yield ◽  
Field Studies ◽  
Palmer Amaranth ◽  
Amaranthus Palmeri ◽  
Marketable Yield ◽  
Yield Data ◽  
Pickling Cucumber ◽  
Cucumber Yield

AbstractField studies were conducted in North Carolina to determine the critical period for Palmer amaranth control (CPPAC) in pickling cucumber. In removal treatments (REM), emerged Palmer amaranth were allowed to compete with cucumber for 14, 21, 28, or 35 d after sowing (DAS) in 2014 and 14, 21, 35, or 42 DAS in 2015, and cucumber was kept weed-free for the remainder of the season. In the establishment treatments (EST), cucumber was maintained free of Palmer amaranth by hand removal until 14, 21, 28, or 35 DAS in 2014 and until 14, 21, 35, or 42 DAS in 2015; after this, Palmer amaranth was allowed to establish and compete with the cucumber for the remainder of the season. The beginning and end of the CPPAC, based on 5% loss of marketable yield, was determined by fitting log-logistic and Gompertz equations to the relative yield data representing REM and EST, respectively. Season-long competition by Palmer amaranth reduced pickling cucumber yield by 45% to 98% and 88% to 98% during 2014 and 2015, respectively. When cucumber was planted on April 25, 2015, the CPPAC ranged from 570 to 1,002 heat units (HU), which corresponded to 32 to 49 DAS. However, when cucumber planting was delayed 2 to 4 wk (May 7 and May 21, 2014 and May 4, 2015), the CPPAC lasted from 100 to 918 HU (7 to 44 DAS). This research suggested that planting pickling cucumber as early as possible during the season may help to reduce competition by Palmer amaranth and delay the beginning of the CPPAC.

scholarly journals Deciphering the Mechanism of Glyphosate Resistance in Amaranthus palmeri by Cytogenomics

2022 ◽  
pp. 1-7
Author(s):  
Dal-Hoe Koo ◽  
Rajendran Sathishraj ◽  
Bernd Friebe ◽  
Bikram S. Gill
Keyword(s):  
Genome Size ◽  
Copy Number ◽  
Fold Increase ◽  
Glyphosate Resistance ◽  
Resistance Mechanisms ◽  
Fish Analysis ◽  
Amaranthus Palmeri ◽  
Artificial Chromosomes ◽  
Genetic Elements ◽  
Meiotic Chromosomes

In agriculture, various chemicals are used to control the weeds. Out of which, glyphosate is an important herbicide invariably used in the cultivation of glyphosate-resistant crops to control weeds. Overuse of glyphosate results in the evolution of glyphosate-resistant weeds. Evolution of glyphosate resistance (GR) in <i>Amaranthus palmeri</i> (AP) is a serious concern in the USA. Investigation of the mechanism of GR in AP identified different resistance mechanisms of which <i>5-enolpyruvylshikimate-3-phosphate synthase</i> (<i>EPSPS</i>) gene amplification is predominant. Molecular analysis of GR AP identified the presence of a 5- to &#x3e;160-fold increase in copies of the <i>EPSPS</i> gene than in a glyphosate-susceptible (GS) population. This increased copy number of the <i>EPSPS</i> gene increased the genome size ranging from 3.5 to 11.8%, depending on the copy number compared to the genome size of GS AP. FISH analysis using a 399-kb <i>EPSPS</i> cassette derived from bacterial artificial chromosomes (BACs) as probes identified that amplified <i>EPSPS</i> copies in GR AP exist in extrachromosomal circular DNA (eccDNA) in addition to the native copy in the chromosome. The <i>EPSPS</i> gene-containing eccDNA having a size of ∼400 kb is termed <i>EPSPS</i>-eccDNA and showed somatic mosacism in size and copy number. <i>EPSPS</i>-eccDNA has a genetic mechanism to tether randomly to mitotic or meiotic chromosomes during cell division or gamete formation and is inherited to daughter cells or progeny generating copy number variation. These eccDNAs are stable genetic elements that can replicate and exist independently. The genomic characterization of the <i>EPSPS</i> locus, along with the flanking regions, identified the presence of a complex array of repeats and mobile genetic elements. The cytogenomics approach in understanding the biology of <i>EPSPS</i>-eccDNA sheds light on various characteristics of <i>EPSPS</i>-eccDNA that favor GR in AP.

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