scholarly journals Scale Expansion of Community Investigations and Integration of the Effects of Abiotic and Biotic Processes on Maintenance of Species Diversity

2011 ◽  
Vol 2011 ◽  
pp. 1-10
Author(s):  
Zhenhong Wang ◽  
Ming Zhang ◽  
Junfeng Yu ◽  
Ruicong Jiang ◽  
Xiaolu Yin ◽  
...  

Information on the maintenance of diversity patterns from regional to local scales is dispersed among academic fields due to the local focus of community ecology. To better understand these patterns, the study of ecological communities needs to be expanded to larger scales and the various processes affecting them need to be integrated using a suitable quantitative method. We determined a range of communities on a flora-subregional scale in Yunnan province, China (383210.02 km2). A series of species pools were delimited from the regional to plot scales. Plant diversity was evaluated and abiotic and biotic processes identified at each pool level. The species pool effect was calculated using an innovative model, and the contribution of these processes to the maintenance of plant species diversity was determined and integrated: climate had the greatest effect at the flora-subregional scale, with historical and evolutionary processes contributing ∼11%; climate and human disturbance had the greatest effect at the local site pool scale; competition exclusion and stress limitation explained strong filtering at the successional stage pool scale; biotic processes contributed more on the local community scale than on the regional scale. Scale expansion combined with the filtering model approach solves the local problem in community ecology.

2019 ◽  
Vol 116 (33) ◽  
pp. 16436-16441 ◽  
Author(s):  
Dylan Craven ◽  
Tiffany M. Knight ◽  
Kasey E. Barton ◽  
Lalasia Bialic-Murphy ◽  
Jonathan M. Chase

Biodiversity patterns emerge as a consequence of evolutionary and ecological processes. Their relative importance is frequently tested on model ecosystems such as oceanic islands that vary in both. However, the coarse-scale data typically used in biogeographic studies have limited inferential power to separate the effects of historical biogeographic factors (e.g., island age) from the effects of ecological ones (e.g., island area and habitat heterogeneity). Here, we describe local-scale biodiversity patterns of woody plants using a database of more than 500 forest plots from across the Hawaiian archipelago, where these volcanic islands differ in age by several million years. We show that, after controlling for factors such as island area and heterogeneity, the oldest islands (Kaua’i and O’ahu) have greater native species diversity per unit area than younger islands (Maui and Hawai’i), indicating an important role for macroevolutionary processes in driving not just whole-island differences in species diversity, but also local community assembly. Further, we find that older islands have a greater number of rare species that are more spatially clumped (i.e., higher within-island β-diversity) than younger islands. When we included alien species in our analyses, we found that the signal of macroevolutionary processes via island age was diluted. Our approach allows a more explicit test of the question of how macroevolutionary factors shape not just regional-scale biodiversity, but also local-scale community assembly patterns and processes in a model archipelago ecosystem, and it can be applied to disentangle biodiversity drivers in other systems.


2019 ◽  
Author(s):  
Patrick L. Thompson ◽  
Laura Melissa Guzman ◽  
Luc De Meester ◽  
Zsófia Horváth ◽  
Robert Ptacnik ◽  
...  

AbstractThe metacommunity concept has the potential to integrate local and regional dynamics within a general community ecology framework. To this end, the concept must move beyond the discrete archetypes that have largely defined it (e.g. neutral vs. species sorting) and better incorporate local scale species interactions and coexistence mechanisms. Here, we present a fundamental reconception of the framework that explicitly links local coexistence theory to the spatial processes inherent to metacommunity theory, allowing for a continuous range of competitive community dynamics. These dynamics emerge from the three underlying processes that shape ecological communities: 1) density-independent responses to abiotic conditions, 2) density-dependent biotic interactions, and 3) dispersal. Stochasticity is incorporated in the demographic realization of each of these processes. We formalize this framework using a simulation model that explores a wide range of competitive metacommunity dynamics by varying the strength of the underlying processes. Using this model and framework, we show how existing theories, including the traditional metacommunity archetypes, are linked by this common set of processes. We then use the model to generate new hypotheses about how the three processes combine to interactively shape diversity, functioning, and stability within metacommunities.Statement of authorshipThis project was conceived at the sTURN working group, of which all authors are members. PLT developed the framework and model with input from all authors. PLT wrote the model code. PLT and LMG performed the simulations. PLT produced the figures and wrote the first draft with input from LMG and JMC. All authors provided feedback and edits on several versions of the manuscript.Data accessibilityAll code for running the simulation model and producing the figures is archived on Zenodo - https://doi.org/10.5281/zenodo.3833035.


2018 ◽  
Vol 2 (01) ◽  
pp. 17-34
Author(s):  
Ajeng Triwuri Widyastuti ; Giosia P. Widjaja

Abstract - The Arab Panjunan kampong serving as the research object happens to be one of the heritage areas of Cirebon Town. This urban kampong has certain ethnic characteristics typical of Arab quarters that make it unique, thus contributing to the rich cultural history of Cirebon. As a heritage area, it is important for this ethnic Arab neighbourhood of Panjunan to draw up an inventory of the specific architectural elements that are still traceable, such as the urban lay-out and its contents as well as the landmarks of this area observed from a physical-spatial angle. The aim of this research project is to find out about this kampong’s various architectural elements that are recognized as such by the locals. This will be the contributing factor in the process of determining which environmental elements can be classified as typical landmarks. The first step taken in the research conducted is field observation in order to establish the elements that have survived in the kampong, including the architectural, social, and cultural ones. The observation related to architectural elements has been identified in accordance with the theory concerning Elements of Urban Design as proposed by Hamid Shirvani in his book The Urban Design Process. The next step is conducting research using the Cognitive Method as applied to the kampong dwellers in Panjunan by way of sketched maps and guided interviews. The respondents, classified based on ethnic heritage (descent) and gender, were requested to describe the environmental elements in this ethnic Arab kampong as far as they could recognize or identify them. Those who experienced difficulties in describing the sketches were assisted by the researcher based on the stories that had been supplied. Based on the acquired data containing these environmental elements, the aspect of memories contained therein was studied by way of interviews linked to the Continuity Theory by Breakwell. Subsequently, an analysis was made of the basis underlying the recognition of these elements based on the Landmark Theory by Kevin Lynch, and classified based on the criteria drawn up by Eko Budihardjo. Through the analysis, it was discovered that Panjunan’s Merah Mosque and its Asy Syafi’i Mosque indeed qualify as as architectural elements that show continuity of memory, gaining validity as iconic elements or landmarks on the regional scale of Cirebon’s ethnic Arab kampong of Panjunan. Keywords : mosque, landmark, recognition, local community, Arab Panjunan kampong


Ecology ◽  
2012 ◽  
Author(s):  
Herman A. Verhoef

At the beginning of the 20th century there was much debate about the “nature” of communities. The driving question was whether the community was a self-organized system of co-occurring species or simply a haphazard collection of populations with minimal functional integration. At that time, two extreme views dominated the discussion: one view considered a community as a superorganism, the member species of which were tightly bound together by interactions that contributed to repeatable patterns of species abundance in space and time. This concept led to the assumption that communities are fundamental entities, to be classified as the Linnaean taxonomy of species. Frederick E. Clements was one of the leading proponents of this approach, and his view became known as the organismic concept of communities. This assumes a common evolutionary history for the integrated species. The opposite view was the individualistic continuum concept, advocated by H. A. Gleason. His focus was on the traits of individual species that allow each to live within specific habitats or geographical ranges. In this view a community is an assemblage of populations of different species whose traits allow persisting in a prescribed area. The spatial boundaries are not sharp, and the species composition can change considerably. Consequently, it was discussed whether ecological communities were sufficiently coherent entities to be considered appropriate study objects. Later, consensus was reached: that properties of communities are of central interest in ecology, regardless of their integrity and coherence. From the 1950s and 1960s onward, the discussion was dominated by the deterministic outcome of local interactions between species and their environments and the building of this into models of communities. This approach, indicated as “traditional community ecology,” led to a morass of theoretical models, without being able to provide general principles about many-species communities. Early-21st-century approaches to bringing general patterns into community ecology concern (1) the metacommunity approach, (2) the functional trait approach, (3) evolutionary community ecology, and (4) the four fundamental processes. The metacommunity approach implicitly recognizes and studies the important role of spatiotemporal dynamics. In the functional trait approach, four themes are focused upon: traits, environmental gradients, the interaction milieu, and performance currencies. This functional, trait-focused approach should have a better prospect of understanding the effects of global changes. Evolutionary community ecology is an approach in which the combination of community ecology and evolutionary biology will lead to a better understanding of the complexity of communities and populations. The four fundamental processes are selection, drift, speciation, and dispersal. This approach concerns an organizational scheme for community ecology, based on these four processes to describe all existing specific models and frameworks, in order to make general statements about process–pattern connections.


2019 ◽  
Vol 16 (151) ◽  
pp. 20180747
Author(s):  
Bernat Bramon Mora ◽  
Giulio V. Dalla Riva ◽  
Daniel B. Stouffer

Null models have become a crucial tool for understanding structure within incidence matrices across multiple biological contexts. For example, they have been widely used for the study of ecological and biogeographic questions, testing hypotheses regarding patterns of community assembly, species co-occurrence and biodiversity. However, to our knowledge we remain without a general and flexible approach to study the mechanisms explaining such structures. Here, we provide a method for generating ‘correlation-informed’ null models, which combine the classic concept of null models and tools from community ecology, like joint statistical modelling. Generally, this model allows us to assess whether the information encoded within any given correlation matrix is predictive for explaining structural patterns observed within an incidence matrix. To demonstrate its utility, we apply our approach to two different case studies that represent examples of common scenarios encountered in community ecology. First, we use a phylogenetically informed null model to detect a strong evolutionary fingerprint within empirically observed food webs, reflecting key differences in the impact of shared evolutionary history when shaping the interactions of predators or prey. Second, we use multiple informed null models to identify which factors determine structural patterns of species assemblages, focusing in on the study of nestedness and the influence of site size, isolation, species range and species richness. In addition to offering a versatile way to study the mechanisms shaping the structure of any incidence matrix, including those describing ecological communities, our approach can also be adapted further to test even more sophisticated hypotheses.


1994 ◽  
Vol 42 (4) ◽  
pp. 527 ◽  
Author(s):  
PA Marquet

Species diversity patterns of small mammals (sigmodontine rodents) in the Chilean-Peruvian Pacific coastal desert and adjacent Andean area (Puna) were analysed by means of latitudinal and altitudinal transects. The statistical analyses of the patterns show: (1) a wide variation in latitudinal species diversity, with a peak in the region where the Puna reaches its greatest areal extent; (2) the differentiation of at least four groups of distinct faunal elements resulting from the interaction of large-scale biogeographic, geological and evolutionary processes; (3) a positive correlation between species richness and altitude for the altitudinal transects located within the Pacific coastal desert area and Puna; and (4) a highly individualistic pattern of community structure at a regional scale. These results are discussed considering biogeographic, palaeoclimatic and evolutionary processes, such as the establishment of the Pacific coastal desert, and the existence of a major centre of species diversification in the Puna area. Similarities and differences between these community-level patterns and those in North American deserts are discussed.


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