scholarly journals Varying Collimation for Dark-Field Extraction

2009 ◽  
Vol 2009 ◽  
pp. 1-7 ◽  
Author(s):  
Ge Wang ◽  
Wenxiang Cong ◽  
Haiou Shen ◽  
Yu Zou

Although x-ray imaging is widely used in biomedical applications, biological soft tissues have small density changes, leading to low contrast resolution for attenuation-based x-ray imaging. Over the past years, x-ray small-angle scattering was studied as a new contrast mechanism to enhance subtle structural variation within the soft tissue. In this paper, we present a detection method to extract this type of x-ray scattering data, which are also referred to as dark-field signals. The key idea is to acquire an x-ray projection multiple times with varying collimation before an x-ray detector array. The projection data acquired with a collimator of a sufficiently high collimation aspect ratio contain mainly the primary beam with little scattering, while the data acquired with an appropriately reduced collimation aspect ratio include both the primary beam and small-angle scattering signals. Then, analysis of these corresponding datasets will produce desirable dark-field signals; for example, via digitally subtraction. In the numerical experiments, the feasibility of our dark-field detection technology is demonstrated in Monte Carlo simulation. The results show that the acquired dark field signals can clearly reveal the structural information of tissues in terms of Rayleigh scattering characteristics.

2018 ◽  
Vol 63 (6) ◽  
pp. 874-882 ◽  
Author(s):  
A. A. Semenov ◽  
V. V. Volkov ◽  
A. V. Zabrodin ◽  
V. V. Gorlevskii ◽  
M. S. Sheverdyaev ◽  
...  

2020 ◽  
Vol 22 (22) ◽  
pp. 12713-12723 ◽  
Author(s):  
Lukas Ludescher ◽  
Roland Morak ◽  
Stephan Braxmeier ◽  
Florian Putz ◽  
Nicola Hüsing ◽  
...  

Apparent strain artifacts resulting from the evaluation of small-angle X-ray scattering data superimpose the actual adsorption induced deformation in silica with hierarchical porosity. These artifacts can be corrected for by detailed modelling.


2001 ◽  
Author(s):  
Karen K. Siu ◽  
Andrei Y. Nikulin ◽  
James Hester ◽  
Andreas K. Freund ◽  
Tetsuya Ishikawa

2012 ◽  
Vol 45 (3) ◽  
pp. 587-593 ◽  
Author(s):  
Haiguang Liu ◽  
Alexander Hexemer ◽  
Peter H. Zwart

Small-angle X-ray and neutron scattering experiments are broadly applied to study biomolecular structure and dynamics. This article presents theSmall Angle Scattering ToolBox(SASTBX), which provides a wide-ranging functionality for the analysis of biological small-angle scattering data, from data reduction to model reconstruction and refinement. TheSASTBXis an open-source package, which is freely available at http://sastbx.als.lbl.gov.


2014 ◽  
Vol 47 (2) ◽  
pp. 810-815 ◽  
Author(s):  
Andreas Hofmann ◽  
Andrew E. Whitten

Small-angle X-ray scattering has established itself as a common technique in structural biology research. Here, two novel Java applications to aid modelling of three-dimensional macromolecular structures based on small-angle scattering data are described.MolScatis an application that computes small-angle scattering intensities from user-provided three-dimensional models. The program can fit the theoretical scattering intensities to experimental X-ray scattering data.SAFIRis a program for interactive rigid-body modelling into low-resolution shapes restored from small-angle scattering data. The program has been designed with an emphasis on ease of use and intuitive handling. An embedded version ofMolScatis used to enable quick evaluation of the fit between the model and experimental scattering data.SAFIRalso provides options to refine macromolecular complexes with optional user-specified restraints against scattering data by means of a Monte Carlo approach.


2015 ◽  
Vol 48 (6) ◽  
pp. 1660-1664 ◽  
Author(s):  
Yuya Shinohara ◽  
Yoshiyuki Amemiya

This study shows that forward scattering at the origin of reciprocal space contributes to the scattering intensity profiles of ultra-small-angle scattering. The forward scattering corresponds to a Fourier transform of the X-ray coherent volume on a sample. This contribution is usually ignored in the study of small-angle scattering, while it is fully considered in the fields of X-ray imaging, such as coherent X-ray diffraction imaging and X-ray ptychography. This effect is explicitly illustrated in the context of small-angle scattering, and the effect of a finite spatial coherence length on small-angle scattering is discussed.


2007 ◽  
Vol 40 (s1) ◽  
pp. s78-s82 ◽  
Author(s):  
Aurelien Gourrier ◽  
Wolfgang Wagermaier ◽  
Manfred Burghammer ◽  
Donna Lammie ◽  
Himadri S. Gupta ◽  
...  

2013 ◽  
Vol 46 (6) ◽  
pp. 1894-1898 ◽  
Author(s):  
Martin Cramer Pedersen ◽  
Lise Arleth ◽  
Kell Mortensen

A software framework for analysis of small-angle scattering data is presented. On the basis of molecular constraints and prior knowledge of the chemical composition of the sample, the software is capable of simultaneously fitting small-angle X-ray and neutron scattering data to analytical or semi-analytical models of biomacromolecules. The software features various fitting routines along with the possibility of incorporating instrumental resolution effects on the fit. Finally, trust region estimation, based on the profile likelihood strategy, is implemented. The algorithms and models are written in C, whereas the user interface is written in Python. Parallelization is implemented using the OpenMP extensions to C. The source code is available for free upon request orviathe associated code repository. The software runs on Linux, Windows and OSX and is available as an open-source initiative published under the General Publishing License.


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