scholarly journals Soybean Genomics: Developments through the Use of Cultivar “Forrest”

2008 ◽  
Vol 2008 ◽  
pp. 1-22 ◽  
Author(s):  
David A. Lightfoot
Keyword(s):  
Crop Production ◽  
Physical Map ◽  
Genomic Analysis ◽  
Transcript Abundance ◽  
Gene Pools ◽  
The North ◽  
Mutant Isolation ◽  
End Sequences ◽  
Genomic Locations ◽  
Soybean Nodulation

Legume crops are particularly important due to their ability to support symbiotic nitrogen fixation, a key to sustainable crop production and reduced carbon emissions. Soybean (Glycine max) has a special position as a major source of increased protein and oil production in the common grass-legume rotation. The cultivar “Forrest” has saved US growers billions of dollars in crop losses due to resistances programmed into the genome. Moreover, since Forrest grows well in the north-south transition zone, breeders have used this cultivar as a bridge between the southern and northern US gene pools. Investment in Forrest genomics resulted in the development of the following research tools: (i) a genetic map, (ii) three RIL populations (96>n>975), (iii) ~200 NILs, (iv) 115,220 BACs and BIBACs, (v) a physical map, (vi) 4 different minimum tiling path (MTP) sets, (vii) 25,123 BAC end sequences (BESs) that encompass 18.5 Mbp spaced out from the MTPs, and 2 000 microsatellite markers within them (viii) a map of 2,408 regions each found at a single position in the genome and 2104 regions found in 2 or 4 similar copies at different genomic locations (each of >150 kbp), (ix) a map of homoeologous regions among both sets of regions, (x) a set of transcript abundance measurements that address biotic stress resistance, (xi) methods for transformation, (xii) methods for RNAi, (xiii) a TILLING resource for directed mutant isolation, and (xiv) analyses of conserved synteny with other sequenced genomes. The SoyGD portal provides access to the data. To date these resources assisted in the genomic analysis of soybean nodulation and disease resistance. This review summarizes the resources and their uses.

Farmers' Perception of Sustainability for Crop Production on the North China Plain

2007 ◽  
Vol 30 (3) ◽  
pp. 129-147 ◽  
Author(s):  
Y. P. Wei ◽  
R. E. White ◽  
D. Chen ◽  
B. A. Davidson ◽  
J. B. Zhang
Keyword(s):  
Crop Production ◽  
North China Plain ◽  
North China ◽  
The North ◽  
The North China Plain

scholarly journals Genetic flow among olive populations within the Mediterranean basin

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5260 ◽  
Author(s):  
Valentina di Rienzo ◽  
Sara Sion ◽  
Francesca Taranto ◽  
Nunzio D’Agostino ◽  
Cinzia Montemurro ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Resources ◽  
Mediterranean Basin ◽  
Eastern Mediterranean ◽  
Olive Tree ◽  
Gene Pools ◽  
The North ◽  
The Mediterranean ◽  
And Migration ◽  
The Mediterranean Basin

Background The olive tree is a typical crop of the Mediterranean basin where it shows a wide diversity, accounting for more than 2,600 cultivars. The ability to discriminate olive cultivars and determine their genetic variability is pivotal for an optimal exploitation of olive genetic resources. Methods We investigated the genetic diversity within 128 olive accessions belonging to four countries in the Mediterranean Basin (Italy, Algeria, Syria, and Malta), with the purpose of better understanding the origin and spread of the olive genotypes across Mediterranean Basin countries. Eleven highly polymorphic simple sequence repeat (SSR) markers were used and proved to be very informative, producing a total of 179 alleles. Results Cluster analysis distinguished three main groups according to their geographical origin, with the current sample of Maltese accessions included in the Italian group. Phylogenetic analysis further differentiated Italian and Maltese olive accessions, clarifying the intermediate position of Maltese accessions along the x/y-axes of principal coordinate analysis (PCoA). Model-based and neighbor clustering, PCoA, and migration analysis suggested the existence of two different gene pools (Algerian and Syrian) and that the genetic exchange occurred between the Syrian, Italian and Maltese populations. Discussion The close relationship between Syrian and Italian and Maltese olives was consistent with the historical domestication and migration of olive tree from the North Levant to eastern Mediterranean basin. This study lays the foundations for a better understanding of olive genetic diversity in the Mediterranean basin and represents a step toward an optimal conservation and exploitation of olive genetic resources.

scholarly journals Water footprint of crop production for different crop structures in the Hebei southern plain, North China

2016 ◽  
Author(s):  
Yingmin Chu ◽  
Yanjun Shen ◽  
Zaijian Yuan
Keyword(s):  
Winter Wheat ◽  
Crop Production ◽  
North China ◽  
Water Footprint ◽  
Groundwater Resources ◽  
Arable Land ◽  
Summer Maize ◽  
The North ◽  
Groundwater Overdraft ◽  
Southern Plain

Abstract. The North China Plain (NCP) is serious lack of fresh water resources, while crop production consumed about 75 % of the region's water. To estimate water consumption of different crops and crop structures in the NCP, the Hebei southern plain (HSP) was selected as a study area because it is a typical region of groundwater overdraft in the NCP. In this study, water footprint (WF) was being used which was consisted of green, blue and grey components. The results showed: (1) the WF of the main crops production was about 51.0 km3 in 2012 and winter wheat, vegetables and summer maize were in the top three leading among the main crops in the HSP, while the water footprint intensity (WFI) of cotton was the largest and vegetables were the smallest; (2) winter wheat and vegetables consumed the main groundwater and their blue water footprint (WFblue) accounted for 66.0 % of the total WFblue in the HSP; (3) the crop structure scenarios analysis indicated that, with about 20 % of arable land cultivating winter wheat-summer maize in rotation, 40 % spring maize, 10 % vegetables and 10 % fruiters can promote the sustainable utilization of groundwater resources, at the same time can ensure sufficient supply of food, vegetables and fruits in the HSP.

scholarly journals Parametric Assessment of Seasonal Drought Risk to Crop Production in Bangladesh

2019 ◽  
Vol 11 (5) ◽  
pp. 1442 ◽  
Author(s):  
Mahiuddin Alamgir ◽  
Morteza Mohsenipour ◽  
Rajab Homsi ◽  
Xiaojun Wang ◽  
Shamsuddin Shahid ◽  
...  
Keyword(s):  
Crop Production ◽  
High Yield ◽  
Unbiased Estimation ◽  
Drought Risk ◽  
Weighting Method ◽  
Hazard Exposure ◽  
The North ◽  
Drought Hazard ◽  
Risk Reduction Measures ◽  
Boro Rice

Droughts are more damaging when they occur during crop growing season. This research assessed the spatial distribution of drought risks to crops in Bangladesh. Catastrophe theory-based weighting method was used to estimate drought hazard, exposure, and risk by avoiding potential human bias. Ten major crops, including eight different types of rice, wheat, and potato, were selected for evaluation of drought risk. Results showed that 32.4%, 27.2%, and 16.2% of land in Bangladesh is prone to extreme Kharif (May-October), Rabi (November-April), and pre-Kharif (March-May) droughts, respectively. Among the major crops, Hybrid Boro rice cultivated in 18.2% of the area is found to be highly vulnerable to droughts, which is followed by High Yield Varity (HYV) Boro (16.9%), Transplant Aman (16.4%), HYV Aman (14.1%), and Basic Aman (12.4%) rice. Hybrid Boro rice in 12 districts, different varieties of Aman rice in 10 districts, and HYV Boro rice in 9 districts, mostly located in the north and northwest of Bangladesh, are exposed to high risk of droughts. High frequency of droughts and use of more land for agriculture have made the region highly prone to droughts. The methodology adopted in this study can be utilized for unbiased estimation of drought risk in agriculture in order to adopt necessary risk reduction measures.

scholarly journals Assessment of Plant Growth Promoting and Abiotic Stress Tolerance Properties of Wheat Endophytic Fungi

2019 ◽  
Vol 2019 ◽  
pp. 1-12 ◽  
Author(s):  
Farhana Alam Ripa ◽  
Wei-dong Cao ◽  
Shuai Tong ◽  
Jian-guang Sun
Keyword(s):  
Heavy Metals ◽  
Plant Growth ◽  
Endophytic Fungi ◽  
Crop Production ◽  
Abiotic Stress Tolerance ◽  
Antibiotic Sensitivity ◽  
Triticum Aestivum L ◽  
Pgp Traits ◽  
The North ◽  
Plant Growth Promoting

The aims of the present work were to isolate and characterize fungal endophytic communities associated with healthy wheat (Triticum aestivum L.) plants, collected from the North China. Segregated endophytes were screened for their PGP traits, abiotic stresses (heavy metals, salinity, drought, and temperature), and antibiotic sensitivity. A total of 16 endophytic fungi were isolated using the culture-dependent approach from different tissue parts of wheat plants. Based upon their internal transcribed spacer (ITS) rDNA gene sequencing, 15 out of 16 isolates were selected for further analysis. In the contemporary investigation, a number of the tested endophytes exhibited fairly good 1-aminocyclopropane-1-carboxylic acid deaminase (ACCD) (0.03±0.011 to 1.43±0.01µmolα-KB mg−1protein hr−1), indole acetic acid (IAA) (1.125±0.04 to36.12±0.004µgml−1), and phosphate solubilizing index (PSI) (2.08±0.03to5.16±0.36) activities. More than 30% isolates gave positive result for siderophore and ammonia tests, whereas all exhibited catalase activity but only 2 (582PDA1 and 582PDA11) produced hydrogen cyanide.Trichodermastrains showed salt, heavy metals, and drought tolerance at high levels and also exhibited resistance to all the tested antibiotics. Strain 582PDA4 was found to be the most temperature (55°C) tolerant isolate. The findings of this study indicated that the microbial endophytes isolated from wheat plants possessing a crucial function to improve plant growth could be utilized as biofertilizers or bioagents to establish a sustainable crop production system.

scholarly journals Insights from invasion ecology: Can consideration of eco-evolutionary experience promote benefits from root mutualisms in plant production?

AoB Plants ◽  
2019 ◽  
Vol 11 (6) ◽  
Author(s):  
Josep Ramoneda ◽  
Johannes Le Roux ◽  
Emmanuel Frossard ◽  
Cecilia Bester ◽  
Noel Oettlé ◽  
...  
Keyword(s):  
Mycorrhizal Fungi ◽  
Crop Production ◽  
Biotic Interactions ◽  
Plant Production ◽  
Mineral Nutrient ◽  
Gene Pools ◽  
Native Plant ◽  
Crop Domestication ◽  
Mutualistic Symbiosis

Abstract Mutualistic plant–microbial functioning relies on co-adapted symbiotic partners as well as conducive environmental conditions. Choosing particular plant genotypes for domestication and subsequent cultivar selection can narrow the gene pools of crop plants to a degree that they are no longer able to benefit from microbial mutualists. Elevated mineral nutrient levels in cultivated soils also reduce the dependence of crops on nutritional support by mutualists such as mycorrhizal fungi and rhizobia. Thus, current ways of crop production are predestined to compromise the propagation and function of microbial symbionts, limiting their long-term benefits for plant yield stability. The influence of mutualists on non-native plant establishment and spread, i.e. biological invasions, provides an unexplored analogue to contemporary crop production that accounts for mutualistic services from symbionts like rhizobia and mycorrhizae. The historical exposure of organisms to biotic interactions over evolutionary timescales, or so-called eco-evolutionary experience (EEE), has been used to explain the success of such invasions. In this paper, we stress that consideration of the EEE concept can shed light on how to overcome the loss of microbial mutualist functions following crop domestication and breeding. We propose specific experimental approaches to utilize the wild ancestors of crops to determine whether crop domestication compromised the benefits derived from root microbial symbioses or not. This can predict the potential for success of mutualistic symbiosis manipulation in modern crops and the maintenance of effective microbial mutualisms over the long term.

scholarly journals Highly diverse flavobacterial phages isolated from North Sea spring blooms

2021 ◽  
Author(s):  
Nina Bartlau ◽  
Antje Wichels ◽  
Georg Krohne ◽  
Evelien M. Adriaenssens ◽  
Anneke Heins ◽  
...  
Keyword(s):  
North Sea ◽  
Heterotrophic Bacteria ◽  
Genomic Analysis ◽  
Mortality Factor ◽  
Phytoplankton Blooms ◽  
Life Styles ◽  
The North ◽  
Host Habitat ◽  
The North Sea ◽  
Respective Host

AbstractIt is generally recognized that phages are a mortality factor for their bacterial hosts. This could be particularly true in spring phytoplankton blooms, which are known to be closely followed by a highly specialized bacterial community. We hypothesized that phages modulate these dense heterotrophic bacteria successions following phytoplankton blooms. In this study, we focused on Flavobacteriia, because they are main responders during these blooms and have an important role in the degradation of polysaccharides. A cultivation-based approach was used, obtaining 44 lytic flavobacterial phages (flavophages), representing twelve new species from two viral realms. Taxonomic analysis allowed us to delineate ten new phage genera and ten new families, from which nine and four, respectively, had no previously cultivated representatives. Genomic analysis predicted various life styles and genomic replication strategies. A likely eukaryote-associated host habitat was reflected in the gene content of some of the flavophages. Detection in cellular metagenomes and by direct-plating showed that part of these phages were actively replicating in the environment during the 2018 spring bloom. Furthermore, CRISPR/Cas spacers and re-isolation during two consecutive years suggested that, at least part of the new flavophages are stable components of the microbial community in the North Sea. Together, our results indicate that these diverse flavophages have the potential to modulate their respective host populations.

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

2004 ◽  
Vol 41 (7) ◽  
pp. 657-666 ◽  
Author(s):  
Michael R. Thon ◽  
Stanton L. Martin ◽  
Stephen Goff ◽  
Rod A. Wing ◽  
Ralph A. Dean
Keyword(s):  
Transposable Element ◽  
Magnaporthe Grisea ◽  
Physical Map ◽  
Element Content ◽  
End Sequences ◽  
Clustering Patterns

Comparative Study of Airborne Pollen from the Northern to the Southern of Tunisia

2019 ◽  
pp. 1-8 ◽  
Author(s):  
S. Hadj Hamda ◽  
A. Ben Dhiab ◽  
M. Msallem ◽  
A. Larbi
Keyword(s):  
Crop Production ◽  
Airborne Pollen ◽  
Flowering Phenology ◽  
Plant Distribution ◽  
The South ◽  
Pollen Type ◽  
The North ◽  
Flowering Season ◽  
Pollen Types ◽  
Study Sites

Aerobiology is a multidisciplinary science dealing with biological particles in the atmosphere generated by natural activities during flowering season. Airborne pollen is now the main studied biological structure which is used as a reliable tool to study plant phenology, plant distribution changes and prediction of crop production. The main aims of this work is to determine the distribution of the different spring flowering species from the North to the South of Tunisia and to establish the pollen spectrum of three regions Mornag (North), Menzel M’hiri (Centre) and Chaal (South) in 2017. Airborne pollen data were collected using three volumetric Hirst-type spore traps placed in Mornag (36°39N; 10°16E), Menzel M’hiri (35°38N; 10°41E) and Chaal (34°34N; 10°19E) during olive flowering season. The highest pollen index was recorded in the north (Mornag, 6487.1) corresponding mainly to 18 different pollen types emitted by anemophilous species with an important presence of Cupressus pollen type having the highest contribution. Lower pollen amounts were recorded in Menzel M’hiri (5983.8) and Chaal (925.3). Olea eurpoeae was the most presented pollen type in these regions. However comparing the different study sites we can note a large distribution of some taxa from north to the south. The main common taxa were Olea europaea, Cupressaceae, Poaceae and Amaranhaceae. Their atmospheric concentrations varied also between the regions. Individual pollen index showed a sharp heterogeneity between the taxa in the same region in one hand and between the study sites in the other hand, thus a statistical analysis was performed to define the main group of taxa according to their individual pollen index. Flowering phenology of the main common taxa was also established.

Pesticide Use Practices by Market Gardeners in the Santa Area of the North West Region of Cameroon

2019 ◽  
pp. 1-11
Author(s):  
A. N. Abdulai ◽  
C. N. Konje ◽  
Tange Denis Achiri ◽  
D. N. Tarla ◽  
D. Nsobinenyui
Keyword(s):  
Crop Production ◽  
Insect Pest ◽  
Vegetable Production ◽  
Chi Square ◽  
North West ◽  
Pests And Diseases ◽  
Agronomic Practices ◽  
The North ◽  
Important Pest ◽  
Chi Square Test

Aims: This work aimed at establishing the different Garden crop pests and how farmers use different pesticides to manage these pests. Place and duration of the Work: This work was carried out in Santa from January to March 2013 Methodology: The methodology involved the use of structured questionnaires which were administered to 120 farmers to obtain information on demographics, constraints to successful crop production, general farm system and agronomic practices, knowledge of insect pest problems, types of pesticides used, dosage and rate of application, and different pests crops suffered from. Data was analysed using descriptive statistics and chi-square test. Results: The study indicates that majority of market gardeners in Santa community are males (70%) with ages from 30-39 and most of them are married (76%). Famers worked with relied on pesticides for pest control and did not dispose of empty pesticide containers properly such as throwing on the farm; use as drinking bowls and returned it to the pesticide vendors. Conclusion: This study provides valuable information on the pesticides used in pests and diseases control in vegetable production and health symptoms like stomach disorders, burns, and catarrh experienced by gardeners. A majority (94%) of farmers suffered from serious insect pest attacks on their farms and the most important pest was the cutworm (Agrotis ipsilon) which affected (65%). A majority (96%) of farmers also reported diseases attacks with late blight (Phytophthora infestans) affecting more than four-fifth (81%) of the farms especially in the rainy season.

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