Dichotomy in perceptual learning of interval timing: calibration of mean accuracy and precision differ in specificity and time course

2013 ◽  
Vol 109 (2) ◽  
pp. 344-362 ◽  
Author(s):  
Hansem Sohn ◽  
Sang-Hun Lee

Our brain is inexorably confronted with a dynamic environment in which it has to fine-tune spatiotemporal representations of incoming sensory stimuli and commit to a decision accordingly. Among those representations needing constant calibration is interval timing, which plays a pivotal role in various cognitive and motor tasks. To investigate how perceived time interval is adjusted by experience, we conducted a human psychophysical experiment using an implicit interval-timing task in which observers responded to an invisible bar drifting at a constant speed. We tracked daily changes in distributions of response times for a range of physical time intervals over multiple days of training with two major types of timing performance, mean accuracy and precision. We found a decoupled dynamics of mean accuracy and precision in terms of their time course and specificity of perceptual learning. Mean accuracy showed feedback-driven instantaneous calibration evidenced by a partial transfer around the time interval trained with feedback, while timing precision exhibited a long-term slow improvement with no evident specificity. We found that a Bayesian observer model, in which a subjective time interval is determined jointly by a prior and likelihood function for timing, captures the dissociative temporal dynamics of the two types of timing measures simultaneously. Finally, the model suggested that the width of the prior, not the likelihoods, gradually shrinks over sessions, substantiating the important role of prior knowledge in perceptual learning of interval timing.

1997 ◽  
Vol 7 (6) ◽  
pp. 421-428
Author(s):  
J.F. Golding ◽  
J.R.R. Stott

The aim of this study was to determine whether the time course of recovery of tolerance, as assessed objectively by rechallenge with motion, paralleled the subjective recovery from motion sickness. Subjects (n = 20) were exposed to 5 pairs of nauseogenic motion challenges in which the time interval between the end of the first and the start of the second of each pair ranged from 15 min to 2 h. The cross-coupled motion challenge had an incrementing profile of rotational velocity from 4° to 92°.s-1 in steps of 4°.s-1 every 30 s, with 8 head movements per 30 s, of approximately 45°, and was continued to the point of moderate nausea. Objective loss of tolerance decreased from 15 min to 60 min after the first challenge, but increased again at 2 h. By contrast, most individuals reported subjective recovery by 15 min to 30 min. It was concluded that there is an underlying effect of motion sickness that sensitizes the response to subsequent motion for a period of at least 2 h. This underlying objective effect can occur in the absence of subjective symptoms, has a slower time course than the subjective recovery from symptoms and appears to be non-monotonic.


2010 ◽  
Author(s):  
Matthew G. Wisniewski ◽  
Barbara A. Church ◽  
Estella H. Liu ◽  
Eduardo Mercado

Paleobiology ◽  
2017 ◽  
Vol 43 (4) ◽  
pp. 550-568 ◽  
Author(s):  
Michał Zatoń ◽  
Tomasz Borszcz ◽  
Michał Rakociński

AbstractIn this study we focused on the dynamics of encrusting assemblages preserved on brachiopod hosts collected from upper Frasnian and lower Famennian deposits of the Central Devonian Field, Russia. Because the encrusted brachiopods come from deposits bracketing the Frasnian/Famennian (F/F) boundary, the results also shed some light on ecological differences in encrusting communities before and after the Frasnian–Famennian (F-F) event. To explore the diversity dynamics of encrusting assemblages, we analyzed more than 1300 brachiopod valves (substrates) from two localities. Taxon accumulation plots and shareholder quorum subsampling (SQS) routines indicated that a reasonably small sample of brachiopod host valves (n=50) is sufficient to capture the majority of the encrusting genera recorded at a given site. The richness of encrusters per substrate declined simultaneously with the number of encrusting taxa in the lower Famennian, accompanied by a decrease in epibiont abundance, with a comparable decrease in mean encrustation intensity (percentage of bioclasts encrusted by one or more epibionts). Epibiont abundance and occupancy roughly mirror each other. Strikingly, few ecological characteristics are correlated with substrate size, possibly reflecting random settlement of larvae. Evenness, which is negatively correlated with substrate size, shows greater within-stage variability among samples than between Frasnian and Famennian intervals and may indicate the instability of early Famennian biocenoses following the faunal turnover. The occurrence distribution of encrusters points to nonrandom associations and exclusions among several encrusting taxa. However, abundance and occupancy of microconchids remained relatively stable throughout the sampled time interval. The notable decline in abundance (~60%) and relatively minor decline in diversity (~30%) suggest jointly that encrusting communities experienced ecological collapse rather than a major mass extinction event. The differences between the upper Frasnian and lower Famennian encrusting assemblages may thus record a turnover associated with the F-F event.


Author(s):  
Motoyasu Honma ◽  
Shoko Saito ◽  
Takeshi Atsumi ◽  
Shin‐ichi Tokushige ◽  
Satomi Inomata‐Terada ◽  
...  

2004 ◽  
Vol 92 (5) ◽  
pp. 3030-3042 ◽  
Author(s):  
Jay Hegdé ◽  
David C. Van Essen

The firing rate of visual cortical neurons typically changes substantially during a sustained visual stimulus. To assess whether, and to what extent, the information about shape conveyed by neurons in visual area V2 changes over the course of the response, we recorded the responses of V2 neurons in awake, fixating monkeys while presenting a diverse set of static shape stimuli within the classical receptive field. We analyzed the time course of various measures of responsiveness and stimulus-related response modulation at the level of individual cells and of the population. For a majority of V2 cells, the response modulation was maximal during the initial transient response (40–80 ms after stimulus onset). During the same period, the population response was relatively correlated, in that V2 cells tended to respond similarly to specific subsets of stimuli. Over the ensuing 80–100 ms, the signal-to-noise ratio of individual cells generally declined, but to a lesser degree than the evoked-response rate during the corresponding time bins, and the response profiles became decorrelated for many individual cells. Concomitantly, the population response became substantially decorrelated. Our results indicate that the information about stimulus shape evolves dynamically and relatively rapidly in V2 during static visual stimulation in ways that may contribute to form discrimination.


2016 ◽  
Vol 20 (3) ◽  
pp. 435-456 ◽  
Author(s):  
SINA BOSCH ◽  
HELENA KRAUSE ◽  
ALINA LEMINEN

How do late proficient bilinguals process morphosyntactic and lexical-semantic information in their non-native language (L2)? How is this information represented in the L2 mental lexicon? And what are the neural signatures of L2 morphosyntactic and lexical-semantic processing? We addressed these questions in one behavioral and two ERP priming experiments on inflected German adjectives testing a group of advanced late Russian learners of German in comparison to native speaker (L1) controls. While in the behavioral experiment, the L2 learners performed native-like, the ERP data revealed clear L1/L2 differences with respect to the temporal dynamics of grammatical processing. Specifically, our results show that L2 morphosyntactic processing yielded temporally and spatially extended brain responses relative to L1 processing, indicating that grammatical processing of inflected words in an L2 is more demanding and less automatic than in the L1. However, this group of advanced L2 learners showed native-like lexical-semantic processing.


2019 ◽  
Author(s):  
Bushra Raj ◽  
Jeffrey A. Farrell ◽  
Aaron McKenna ◽  
Jessica L. Leslie ◽  
Alexander F. Schier

ABSTRACTNeurogenesis in the vertebrate brain comprises many steps ranging from the proliferation of progenitors to the differentiation and maturation of neurons. Although these processes are highly regulated, the landscape of transcriptional changes and progenitor identities underlying brain development are poorly characterized. Here, we describe the first developmental single-cell RNA-seq catalog of more than 200,000 zebrafish brain cells encompassing 12 stages from 12 hours post-fertilization to 15 days post-fertilization. We characterize known and novel gene markers for more than 800 clusters across these timepoints. Our results capture the temporal dynamics of multiple neurogenic waves from embryo to larva that expand neuronal diversity from ∼20 cell types at 12 hpf to ∼100 cell types at 15 dpf. We find that most embryonic neural progenitor states are transient and transcriptionally distinct from long-lasting neural progenitors of post-embryonic stages. Furthermore, we reconstruct cell specification trajectories for the retina and hypothalamus, and identify gene expression cascades and novel markers. Our analysis reveal that late-stage retinal neural progenitors transcriptionally overlap cell states observed in the embryo, while hypothalamic neural progenitors become progressively distinct with developmental time. These data provide the first comprehensive single-cell transcriptomic time course for vertebrate brain development and suggest distinct neurogenic regulatory paradigms between different stages and tissues.


PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11875
Author(s):  
Tomoko Matsuda

Large volumes of high-throughput sequencing data have been submitted to the Sequencing Read Archive (SRA). The lack of experimental metadata associated with the data makes reuse and understanding data quality very difficult. In the case of RNA sequencing (RNA-Seq), which reveals the presence and quantity of RNA in a biological sample at any moment, it is necessary to consider that gene expression responds over a short time interval (several seconds to a few minutes) in many organisms. Therefore, to isolate RNA that accurately reflects the transcriptome at the point of harvest, raw biological samples should be processed by freezing in liquid nitrogen, immersing in RNA stabilization reagent or lysing and homogenizing in RNA lysis buffer containing guanidine thiocyanate as soon as possible. As the number of samples handled simultaneously increases, the time until the RNA is protected can increase. Here, to evaluate the effect of different lag times in RNA protection on RNA-Seq data, we harvested CHO-S cells after 3, 5, 6, and 7 days of cultivation, added RNA lysis buffer in a time course of 15, 30, 45, and 60 min after harvest, and conducted RNA-Seq. These RNA samples showed high RNA integrity number (RIN) values indicating non-degraded RNA, and sequence data from libraries prepared with these RNA samples was of high quality according to FastQC. We observed that, at the same cultivation day, global trends of gene expression were similar across the time course of addition of RNA lysis buffer; however, the expression of some genes was significantly different between the time-course samples of the same cultivation day; most of these differentially expressed genes were related to apoptosis. We conclude that the time lag between sample harvest and RNA protection influences gene expression of specific genes. It is, therefore, necessary to know not only RIN values of RNA and the quality of the sequence data but also how the experiment was performed when acquiring RNA-Seq data from the database.


2017 ◽  
Vol 117 (2) ◽  
pp. 738-755 ◽  
Author(s):  
Nareg Berberian ◽  
Amanda MacPherson ◽  
Eloïse Giraud ◽  
Lydia Richardson ◽  
J.-P. Thivierge

In various regions of the brain, neurons discriminate sensory stimuli by decreasing the similarity between ambiguous input patterns. Here, we examine whether this process of pattern separation may drive the rapid discrimination of visual motion stimuli in the lateral intraparietal area (LIP). Starting with a simple mean-rate population model that captures neuronal activity in LIP, we show that overlapping input patterns can be reformatted dynamically to give rise to separated patterns of neuronal activity. The population model predicts that a key ingredient of pattern separation is the presence of heterogeneity in the response of individual units. Furthermore, the model proposes that pattern separation relies on heterogeneity in the temporal dynamics of neural activity and not merely in the mean firing rates of individual neurons over time. We confirm these predictions in recordings of macaque LIP neurons and show that the accuracy of pattern separation is a strong predictor of behavioral performance. Overall, results propose that LIP relies on neuronal pattern separation to facilitate decision-relevant discrimination of sensory stimuli. NEW & NOTEWORTHY A new hypothesis is proposed on the role of the lateral intraparietal (LIP) region of cortex during rapid decision making. This hypothesis suggests that LIP alters the representation of ambiguous inputs to reduce their overlap, thus improving sensory discrimination. A combination of computational modeling, theoretical analysis, and electrophysiological data shows that the pattern separation hypothesis links neural activity to behavior and offers novel predictions on the role of LIP during sensory discrimination.


2019 ◽  
Vol 19 (5) ◽  
pp. 9 ◽  
Author(s):  
Pan Zhang ◽  
Yukai Zhao ◽  
Barbara Anne Dosher ◽  
Zhong-Lin Lu

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