Prediction of Cell Type Specific Transcription Factor Binding Site Occupancy

Proceedings of the 7th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '16 ◽

10.1145/2975167.2985652 ◽

2016 ◽

Author(s):

Faizy Ahsan ◽

Doina Precup ◽

Mathieu Blanchette

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Site Occupancy ◽

Transcription Factor Binding ◽

Cell Type ◽

Factor Binding Site ◽

Specific Transcription Factor ◽

Factor Binding ◽

Cell Type Specific

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Adenovirus L4-22K stimulates major late transcription by a mechanism requiring the intragenic late-specific transcription factor-binding site

Virus Research ◽

10.1016/j.virusres.2010.05.013 ◽

2010 ◽

Vol 151 (2) ◽

pp. 220-228 ◽

Cited By ~ 14

Author(s):

Ellenor Backström ◽

Kerstin B. Kaufmann ◽

Xin Lan ◽

Göran Akusjärvi

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Specific Transcription Factor ◽

Factor Binding ◽

Late Transcription

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Positive Selection on a Human-Specific Transcription Factor Binding Site Regulating IL4 Expression

Current Biology ◽

10.1016/j.cub.2003.11.025 ◽

2003 ◽

Vol 13 (23) ◽

pp. 2118-2123 ◽

Cited By ~ 95

Author(s):

Matthew V. Rockman ◽

Matthew W. Hahn ◽

Nicole Soranzo ◽

David B. Goldstein ◽

Gregory A. Wray

Keyword(s):

Transcription Factor ◽

Positive Selection ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Specific Transcription Factor ◽

Factor Binding ◽

Human Specific

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Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae

Bioinformatics ◽

10.1093/bioinformatics/18.10.1289 ◽

2002 ◽

Vol 18 (10) ◽

pp. 1289-1296 ◽

Cited By ~ 6

Author(s):

R. Harrison ◽

C. DeLisi

Keyword(s):

Saccharomyces Cerevisiae ◽

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Site Characterization ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Specific Transcription Factor ◽

Factor Binding

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A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c.

Proceedings of the 2002 ACM symposium on Applied computing - SAC '02 ◽

10.1145/508791.508823 ◽

2002 ◽

Author(s):

Rhonda Harrison ◽

Charles DeLisi

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Site Characterization ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Specific Transcription Factor ◽

Factor Binding

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Identifying Common Structural DNA Properties in Transcription Factor Binding Site Sets of the LacI-GalR Family

Current Bioinformatics ◽

10.2174/1574893611308040010 ◽

2013 ◽

Vol 8 (4) ◽

pp. 483-488 ◽

Cited By ~ 2

Author(s):

Pieter Meysman ◽

Kathleen Marchal ◽

Kristof Engelen

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Factor Binding

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Characterization of a myeloid-specific enhancer of the chicken lysozyme gene. Major role for an Ets transcription factor-binding site.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(17)32378-5 ◽

1994 ◽

Vol 269 (27) ◽

pp. 17794-17801

Author(s):

B. Ahne ◽

W.H. Strätling

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Factor Binding ◽

Lysozyme Gene ◽

Ets Transcription Factor ◽

Chicken Lysozyme

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Transcription factor binding site detection using convolutional neural networks with a functional group-based data representation

Journal of Physics Conference Series ◽

10.1088/1742-6596/1824/1/012001 ◽

2021 ◽

Vol 1824 (1) ◽

pp. 012001

Author(s):

Gergely Pap ◽

Györgypál Zoltán ◽

Krisztián Ádám ◽

László Tóth ◽

Zoltán Hegedűs

Keyword(s):

Neural Networks ◽

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Convolutional Neural Networks ◽

Functional Group ◽

Transcription Factor Binding ◽

Data Representation ◽

Factor Binding Site ◽

Factor Binding

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Disentangling transcription factor binding site complexity

Nucleic Acids Research ◽

10.1093/nar/gky683 ◽

2018 ◽

Cited By ~ 1

Author(s):

Ralf Eggeling

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Factor Binding

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CAE-CNN: Predicting transcription factor binding site with convolutional autoencoder and convolutional neural network

Expert Systems with Applications ◽

10.1016/j.eswa.2021.115404 ◽

2021 ◽

pp. 115404

Author(s):

Yongqing Zhang ◽

Shaojie Qiao ◽

Yuanqi Zeng ◽

Dongrui Gao ◽

Nan Han ◽

...

Keyword(s):

Neural Network ◽

Transcription Factor ◽

Convolutional Neural Network ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Factor Binding ◽

Convolutional Autoencoder

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PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments

Bioinformatics ◽

10.1093/bioinformatics/btw448 ◽

2016 ◽

Vol 32 (17) ◽

pp. i629-i638 ◽

Cited By ~ 7

Author(s):

Tuomo Hartonen ◽

Biswajyoti Sahu ◽

Kashyap Dave ◽

Teemu Kivioja ◽

Jussi Taipale

Keyword(s):

Transcription Factor ◽

Binding Site ◽

Transcription Factor Binding Site ◽

Transcription Factor Binding ◽

Factor Binding Site ◽

Factor Binding

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