Comparison of the genetic variation in Svalbard and Norwegian reindeer

1985 ◽  
Vol 63 (9) ◽  
pp. 2038-2042 ◽  
Author(s):  
K. H. Røed
Keyword(s):  
Genetic Variation ◽  
Rangifer Tarandus ◽  
Polyacrylamide Gel Electrophoresis ◽  
Divergence Time ◽  
Recent Time ◽  
Evolutionary Divergence ◽  
Average Heterozygosity ◽  
Polymorphic Loci ◽  
Svalbard Reindeer ◽  
Long Time

Polyacrylamide gel electrophoresis was used to score for genetic variation in 35 loci in Svalbard reindeer, Rangifer tarandus platyrhynchus, and in reindeer, Rangifer tarandus tarandus, from two localities in northern Norway. In R. t. platyrhynchus the proportion of polymorphic loci was 0.114 and the average heterozygosite was 0.030. In R. t. tarandus the proportion of polymorphic loci was 0.171–0.286 and the average heterozygosity was 0.043–0.045. Excluding the variability in the locus coding for transferrin from calculations reduced the average heterozygosity to 0.020 in R. t. platyrhynchus and to 0.021–0.025 in R. t. tarandus, suggesting that the amount of genetic variation in R. t. platyrhynchus is not very different from that in R. t. tarandus. Unique alleles in the loci coding for transferrin and acid phosphatase for the two subspecies indicate that there has been no interbreeding in recent time. The genetic distance between the two subspecies is within the same range as between subspecies of other organisms. Evolutionary divergence time based on the protein data indicates that either the divergence between these subspecies was initiated a very long time ago or R. t. platyrhynchus originates from other subspecies of reindeer.

Transferrin variation in caribou (Rangifer tarandus L.) on the Canadian Arctic islands

1986 ◽  
Vol 64 (1) ◽  
pp. 94-98 ◽  
Author(s):  
K. H. Røed ◽  
H. Staaland ◽  
E. Broughton ◽  
D. C. Thomas
Keyword(s):  
Genetic Distance ◽  
Gel Electrophoresis ◽  
Rangifer Tarandus ◽  
Polyacrylamide Gel Electrophoresis ◽  
Canadian Arctic ◽  
High Arctic ◽  
Polyacrylamide Gel ◽  
Common Allele ◽  
Island Populations ◽  
Svalbard Reindeer

Polyacrylamide gel electrophoresis was used to analyse transferrin variation in caribou from the Canadian Arctic islands. Sixteen alleles were detected in Peary caribou (Rangifer tarandus pearyi). The most common allele was TfG2, which increased in frequency from 0.167 at the Boothia Peninsula to 0.236 in the Peel population and 0.340 in the Parry population. The presence of this allele, which is the most common allele in Svalbard reindeer (R. t. platyrhynchus) and not detected in Norwegian reindeer (R. t. tarandus), suggests a common origin for the Peary caribou and the Svalbard reindeer. The large genetic distance in the transferrin locus between continental and island populations suggests the isolation of a High Arctic population in a northern refugium during the Wisconsin glaciation.

scholarly journals Transferrin variation and evolution of Canadian barren-ground caribou

Rangifer ◽  
1990 ◽  
Vol 10 (3) ◽  
pp. 385 ◽  
Author(s):  
Knut H. Røed ◽  
D. C. Thomas
Keyword(s):  
Genetic Variation ◽  
Allele Frequency ◽  
Gel Electrophoresis ◽  
Rangifer Tarandus ◽  
High Arctic ◽  
Ancestral Population ◽  
Allele Frequency Distribution ◽  
Frequency Pattern ◽  
Barren Ground ◽  
Svalbard Reindeer

Blood samples were obtained from 95 barren-ground caribou (Rangifer tarandus groenlandicus) of the Beverly herd in Northwest Territories, Canada. Polyacrylamid gel electrophoresis was used to score for genetic variation in the locus coding for transferrin. The pattern of allele frequency distribution are compared with previously reported values of Eurasian tundra reindeer (R.t. tarandus), Alaska caribou (R.t. granti), Peary caribou (R.t. pearyi), and Svalbard reindeer (R.t. platyrhynchus). In the Beverly herd a total of 21 different transferrin alleles were detected. The amount of genetic variation was higher in the Canadian barren-ground caribou than what has been detected in other subspecies of reindeer/caribou. Highly gene-tical differences in the allele frequencies were detected between the Canadian barren-ground caribou and the other subspecies. The genetic identity analyses indicates approximately the same amount of genetic differentiation when the Canadian barren-ground caribou are compared with Alaska caribou as with the Peary caribou. The allele frequency pattern could be explained by a possible origin of the Canadian barren-ground caribou from an ancestral population which was genetical influenced by animals surviving the We-ichselian glaciation in refugia both in high Arctic, in Beringia, and south of the ice sheet.

Genetic variation and population subdivision in Australian barramundi, Lates calcarifer (Bloch)

1985 ◽  
Vol 36 (2) ◽  
pp. 203 ◽  
Author(s):  
JB Shaklee ◽  
JP Salini
Keyword(s):  
Genetic Variation ◽  
Gel Electrophoresis ◽  
Polyacrylamide Gel Electrophoresis ◽  
Allele Frequencies ◽  
Population Subdivision ◽  
Starch Gel Electrophoresis ◽  
Average Heterozygosity ◽  
Lates Calcarifer ◽  
Repeated Sampling ◽  
Starch Gel

Starch gel electrophoresis of enzymes and polyacrylamide gel electrophoresis of muscle proteins were used to study genetic variation in 589 barramundi from three widely separated regions in northern Australia. Presumed genetic variation was observed at 16 loci (out of 46 screened). However, only 11 of these were polymorphic at the p0.99 level. The average heterozygosity in this species was 0.032. In nearly all cases, genotypic proportions agreed closely with Hardy-Weinberg expectations. Repeated sampling in each region revealed little or no change in allele frequencies over a period of several months. Similarly, comparisons of allele frequencies for fish from marine and from freshwater localities in the south-eastem Gulf of Carpentaria failed to reveal significant genetic differences between habitats. Between-region heterogeneity Χ2 tests indicated substantial genetic differentiation at 10 of the 11I polymorphic loci. These data indicate the existence of at least three distinct stocks or subpopulations of barramundi in Australia.

scholarly journals Transferrin variation and evolution of Alaskan reindeer and caribou, Rangifer tarandus L.

Rangifer ◽  
1986 ◽  
Vol 6 (2) ◽  
pp. 247 ◽  
Author(s):  
Knut H. Røed ◽  
Ken R. Whitten
Keyword(s):  
Allele Frequency ◽  
Frequency Distribution ◽  
Gel Electrophoresis ◽  
Rangifer Tarandus ◽  
Polyacrylamide Gel Electrophoresis ◽  
Polyacrylamide Gel ◽  
Allele Frequency Distribution ◽  
Common Allele ◽  
Frequency Distributions ◽  
Svalbard Reindeer

Polyacrylamide gel electrophoresis was used to analyse transferrin variation in wild caribou (Rangifer tarandus granti) and domestic reindeer (R.t. tarandus) from Alaska. Eighteen alleles were detected in caribou and ten alleles were detected in reindeer. The most common allele was Tf 1 with a frequency of 0.304 and 0.408 in caribou and reindeer, respectively. The allele frequency distributions were significantly different in reindeer and caribou. This finding, together with the absence in reindeer of nine alleles present in caribou, suggests that little genetic exchange has taken place between caribou and reindeer in Alaska. The allele frequency distribution in Alaska caribou and reindeer are compared with those for other populations of caribou and reindeer. This comparison indicates that Alaskan caribou as well as Eurasian reindeer have evolved from a common ancesteral population different from the ancesteral population of Peary cairbou (R.t. pearyi) and Svalbard reindeer (R.t. platyrhynchus).

Survey of the Genetic Variation Among Eastern Lake Superior Lake Trout (Salvelinus namaycush)

1981 ◽  
Vol 38 (12) ◽  
pp. 1738-1746 ◽  
Author(s):  
Terrence R. Dehring ◽  
Anne F. Brown ◽  
Charles H. Daugherty ◽  
Stevan R. Phelps
Keyword(s):  
Genetic Variation ◽  
Gel Electrophoresis ◽  
Lake Trout ◽  
Lake Superior ◽  
Salvelinus Namaycush ◽  
Starch Gel Electrophoresis ◽  
Average Heterozygosity ◽  
Management Implications ◽  
Salmonid Species ◽  
Starch Gel

Patterns of genetic variation among lake trout (Salvelinus namaycush) of eastern Lake Superior were examined using starch gel electrophoresis. We used 484 individuals sampled from three areas, representing three morphological types (leans, humpers, and siscowets). Of 50 loci examined, 44 were monomorphic in all groups sampled. Genetic variation occurs at six loci AAT-1,2, MDH-3,4, ME-1, and SOD-1. The average heterozygosity found (H = 0.015) is low relative to other salmonid species. A significant amount of heterogeneity exists among the 10 lake trout samples. These differences are due to variation within as well as between morphological types. The significance and management implications of these data are discussed.Key words: genetic variation, lake trout, Salvelinus namaycush, Lake Superior

scholarly journals POPULATION GENETIC CONSEQUENCES OF FEEDING HABITS IN SOME FOREST LEPIDOPTERA

Genetics ◽  
1979 ◽  
Vol 92 (3) ◽  
pp. 1005-1021
Author(s):  
Charles Mitter ◽  
Douglas J Futuyma
Keyword(s):  
Genetic Variation ◽  
Environmental Heterogeneity ◽  
Feeding Habits ◽  
Functional Relation ◽  
Allozyme Variation ◽  
Unexpected Result ◽  
Polymorphic Loci ◽  
Allozyme Loci ◽  
Race Formation ◽  
Relationship Of

ABSTRACT By surveying variation at allozyme loci in several phytophagous lepidopteran species (Geometridae), we have tested two hypotheses about the relationship of genetic variation to environmental heterogeneity: (1) that allozyme polymorphisms may exist because of associations between genotypes and "niches" (different host plants, in this instance), and (2) that the overall genetic variation of a species is correlated with environmental heterogeneity (or breadth of the species' overall ecological niche) .—Genetic differentiation among samples of oligophagous or polyphagous species taken from different host species was observed in one of three species, at only one of seven polymorphic loci. The data thus provide no evidence for pronounced genetic sub-structuring, or "host race" formation in these sexually reproducing species, although host plant-genotype associations in a parthenogenetic moth give evidence of the potential for diversifying selection.—In a comparison of allozyme variation in polyphagous ("generalized") and oligophagous ("specialized") species, heterozygosity appeared to be higher in specialized species, at all polymorphic loci but one. I t is possible that this unexpected result arises from a functional relation between breadth of diet and genetic variation.

scholarly journals Svalbard reindeer (Rangifer tarandus platyrhynchus) antler characteristics reflecting the local environmental conditions

2019 ◽  
Vol 46 (1) ◽  
pp. 16-23
Author(s):  
Jan Kavan ◽  
Veronika Anděrová
Keyword(s):  
Environmental Conditions ◽  
Rangifer Tarandus ◽  
Well Being ◽  
Climatic Conditions ◽  
High Mountain ◽  
Atmospheric Conditions ◽  
Individual Subject ◽  
Svalbard Reindeer ◽  
Invasive Method ◽  
Antler Size

AbstractA new non-invasive method based on picture analysis was used to estimate the conditions in Svalbard reindeer populations. The well-being of an individual subject is often expressed through visual indices. Two distinct reindeer populations were compared based on their antler parameters. Relative antler size and number of tines are variables supposed to reflect correspondingly the environmental conditions of sedentary populations within the growing season. The occurrence areas of two studied populations are distinctly isolated – separated with high mountain ridges, glaciers and fjords. The population in Petuniabukta occupies a sparsely vegetated region with harsh climatic conditions, whereas Skansbukta represents an area with continuous tundra vegetation cover, milder climatic conditions and, consequently, also a longer vegetation season. These environmental factors probably caused significant differences in the relative antler size and number of tines in the studied species. The Skansbukta population exhibited a larger relative antler size and higher number of tines than the population in Petuniabukta (both parameters differed significantly, p < 0.01). This difference reflects concisely the different environmental conditions of both locations. A comparison of Skansbukta population antler characteristics between years 2017 and 2018 did not reveal significant changes, most probably due to very similar atmospheric conditions in these two years (in terms of air temperature).

scholarly journals Genetic analysis of silver-fir populations in the Beskids

2011 ◽  
Vol 72 (2) ◽  
pp. 115-119 ◽  
Author(s):  
Leon Mejnartowicz
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Genetic Analysis ◽  
Abies Alba ◽  
Genetic Distances ◽  
Silver Fir ◽  
Geographical Distance ◽  
Polymorphic Loci ◽  
Expected Heterozygosity ◽  
Rare Alleles

Twenty-eight isozymic loci were studied in the Beskid Mts., in four populations of common silver-fir (<em>Abies alba</em>): one in Beskid Makowski (BM) and three populations in Beskid Sądecki (BS). Their genetic variation and diversity were analyzed, and Nei's genetic distances between the populations were calculated. The results show that the geographical distance between the BM population and the three BS populations is reflected in genetic distances. The BM population is clearly distinct from the others. It has the lowest genetic diversity (<em>I</em> = <em>0.42</em>), percentage of polymorphic loci <em>(%PoL </em>= <em>64.29</em>) and number of rare alleles (<em>NoRa </em>= <em>5</em>). Besides, the BM population has the highest observed heterozygosity (<em>Ho </em>= <em>0.291</em>), which exceeds the expected heterozygosity (<em>He </em>= <em>0.254</em>), estimated on the basis of the Hardy-Weinberg Principle. On the contrary, BS populations are in the state of equilibrium, which is manifested, in similar values of <em>He </em>= <em>0.262 </em>and <em>Ho </em>= <em>0.264</em>.

scholarly journals Energy expenditure of free-living reindeer estimated by the doubly labelled water method

Rangifer ◽  
2000 ◽  
Vol 20 (2-3) ◽  
pp. 211 ◽  
Author(s):  
Geir Gotaas ◽  
Eric Milne ◽  
Paul Haggarty ◽  
Nicholas J.C. Tyler
Keyword(s):  
Energy Expenditure ◽  
Rangifer Tarandus ◽  
Water Flux ◽  
Co2 Production ◽  
Wild Ungulates ◽  
Free Living ◽  
Doubly Labelled Water ◽  
Svalbard Reindeer ◽  
Mountain Pasture ◽  
The Mean

The doubly labelled water (DLW) method was used to measure total energy expenditure (TEE) in three male reindeer (Rangifer tarandus tarandus) aged 22 months in winter (February) while the animals were living unrestricted at natural mountain pasture in northern Norway (69&deg;20'N). The concentrations of 2H and l8O were measured in water extracted from samples of faeces collecred from the animals 0.4 and 11.2 days after injection of the isotopes. Calculated rates of water flux and CO2-production were adjusted to compensate for estimated losses of 2H in faecal solids and in methane produced by microbial fermentation of forage in the rumen. The mean specific TEE in the three animals was 3.057 W.kg-1 (range 2.436 - 3.728 W.kg1). This value is 64% higher than TEE measured by the DLW method in four captive, non-pregnant adult female reindeer in winter and probably mainly reflects higher levels of locomotor activity in the free-living animals. Previous estimates of TEE in free-living Rangifer in winter based on factorial models range from 3.038 W.kg-1 in female woodland caribou (R. t. caribou) to 1.813 W.kg-1 in female Svalbard reindeer (R. t. platyrhynchus). Thus, it seems that existing factorial models are unlikely to overestimate TEE in reindeer/caribou: they may, instead, be unduly conservative. While the present study serves as a general validation of the factorial approach, we suggest that the route to progress in the understanding of field energetics in wild ungulates is via application of the DLW method.

scholarly journals Reliable confidence intervals for RelTime estimates of evolutionary divergence times

2019 ◽  
Author(s):  
Qiqing Tao ◽  
Koichiro Tamura ◽  
Beatriz Mello ◽  
Sudhir Kumar
Keyword(s):  
Confidence Intervals ◽  
Divergence Time ◽  
Simulated Data ◽  
Molecular Dating ◽  
Divergence Times ◽  
Rate Variation ◽  
Evolutionary Divergence ◽  
Posterior Density ◽  
Divergence Time Estimates ◽  
Highest Posterior Density

AbstractConfidence intervals (CIs) depict the statistical uncertainty surrounding evolutionary divergence time estimates. They capture variance contributed by the finite number of sequences and sites used in the alignment, deviations of evolutionary rates from a strict molecular clock in a phylogeny, and uncertainty associated with clock calibrations. Reliable tests of biological hypotheses demand reliable CIs. However, current non-Bayesian methods may produce unreliable CIs because they do not incorporate rate variation among lineages and interactions among clock calibrations properly. Here, we present a new analytical method to calculate CIs of divergence times estimated using the RelTime method, along with an approach to utilize multiple calibration uncertainty densities in these analyses. Empirical data analyses showed that the new methods produce CIs that overlap with Bayesian highest posterior density (HPD) intervals. In the analysis of computer-simulated data, we found that RelTime CIs show excellent average coverage probabilities, i.e., the true time is contained within the CIs with a 95% probability. These developments will encourage broader use of computationally-efficient RelTime approach in molecular dating analyses and biological hypothesis testing.

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