Genetic structure of the arboreal squirrels (Glaucomys sabrinus and Tamiasciurus hudsonicus) in the North American Black Hills

2012 ◽  
Vol 90 (9) ◽  
pp. 1191-1200 ◽  
Author(s):  
A.M. Kiesow ◽  
E.M. Monroe ◽  
H.B. Britten
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Management Practices ◽  
Allelic Diversity ◽  
Black Hills ◽  
Tamiasciurus Hudsonicus ◽  
Glaucomys Sabrinus ◽  
Red Squirrel ◽  
Isolated Populations ◽  
Red Squirrels

We selected two isolated mammalian populations, the Black Hills northern flying squirrel ( Glaucomys sabrinus (Shaw, 1801)) and red squirrel ( Tamiasciurus hudsonicus (Erxleben, 1777)), to elucidate their genetic structure. We trapped both squirrels from 2005 to 2007, in three regions of the Black Hills, differing in geology and vegetation, to collect ear samples for genetic analyses. Microsatellite loci (northern flying (9) and red squirrel (13)) were used to examine genetic structure. Data analyses estimated genetic variability, substructure, and gene flow. Northern flying and red squirrel populations have allelic diversity and observed heterozygosity similar to other isolated populations. Each species shows weak substructure from STRUCTURE and GENELAND analyses, suggesting squirrel movements may be inhibited by topography or unsuitable habitat. Recent gene flow estimates from BAYESASS indicate that both species experience some within population gene flow and red squirrels may be more structured than northern flying squirrels because of lower migration rates. Concordant patterns of genetic structure in northern flying and red squirrels indicate that other species’ movements in the Black Hills may be affected by topography and habitat. Because their habitat is isolated in the Black Hills, management practices and conservation measures are recommended to promote viability and survival of each species.

SEASONAL DAMAGE BY INSECTS AND SQUIRRELS TO FEMALE REPRODUCTIVE STRUCTURES OF BLACK SPRUCE, PICEA MARIANA (MILL.) B.S.P.

1988 ◽  
Vol 120 (12) ◽  
pp. 1113-1121 ◽  
Author(s):  
Y.H. Prévost ◽  
J.E. Laing ◽  
V.F. Haavisto
Keyword(s):  
Picea Mariana ◽  
Black Spruce ◽  
Choristoneura Fumiferana ◽  
Tamiasciurus Hudsonicus ◽  
Red Squirrel ◽  
Red Squirrels ◽  
Reproductive Structures ◽  
Cone Axis ◽  
Viable Seeds ◽  
Cone Growth

AbstractThe seasonal damage to female reproductive structures (buds, flowers, and cones) of black spruce, Picea mariana (Mill.) B.S.P., was assessed during 1983 and 1984. Nineteen insects (five Orders) and the red squirrel, Tamiasciurus hudsonicus (Erxleben), were found feeding on these reproductive structures. Collectively, these organisms damaged 88.9 and 53.5% of the cones in 1983 and 1984, respectively. In the 2 years, Lepidoptera damaged 61.8% of the cones in 1983 and 44.4% of the cones in 1984. The spruce budworm, Choristoneura fumiferana (Clem.), and the spruce coneworm, Dioryctria reniculelloides Mut. and Mun., were the most important pests. Cones damaged by Lepidoptera could be classed into three categories: (a) severe, yielding no seeds; (b) moderate, yielding 22.3 seeds per cone; and (c) light, yielding 37.5 seeds per cone. Undamaged cones yielded on average 39.9 seeds per cone. Red squirrels removed 18.8% of the cones in 1983 and none in 1984. The spruce cone axis midge, Dasineura rachiphaga Tripp, and the spruce cone maggot, Lasiomma anthracinum (Czerny), caused minor damage in both years. Feeding by spruce cone axis midge did not reduce cone growth significantly or the number of viable seeds per cone, but feeding by the spruce cone maggot did. During both years new damage by insects to the female reproductive structures of the experimental trees was not observed after mid-July. In 1983 damage by red squirrels occurred from early to late September. In 1984 damage to cones on trees treated with dimethoate was 15.6% compared with 53.5% for untreated trees, without an increase in the number of aborted cones.

Intact genetic structure and high levels of genetic diversity in bottlenecked sockeye salmon (Oncorhynchus nerka) populations of the Fraser River, British Columbia, Canada

2000 ◽  
Vol 57 (10) ◽  
pp. 1985-1998 ◽  
Author(s):  
Ruth E Withler ◽  
Khai D Le ◽  
R John Nelson ◽  
Kristina M Miller ◽  
Terry D Beacham
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Genetic Structure ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Allelic Diversity ◽  
Lower Proportion ◽  
Fraser River ◽  
Rare Alleles ◽  
Genetic Bottlenecks

Analysis of six microsatellite loci in 5800 sockeye salmon (Oncorhynchus nerka) from 29 Fraser River populations provided little evidence of genetic bottlenecks or mass straying in upper Fraser sockeye salmon resulting from reduced abundances following 1913-1914 rockslides in the Fraser canyon and successive decades of high exploitation. Upper Fraser populations were not characterized by a paucity of rare alleles, a sensitive indicator of populations in which effective size has been recently reduced. Heterozygosity and allelic diversity did not differ consistently between lower and upper Fraser populations. Throughout the watershed, early-migrating populations had lower allelic diversity and a lower proportion of rare alleles than did late-migrating ones. Genetic differentiation between upper and lower Fraser populations and heterogeneity among lower Fraser populations supported the suggestion that Fraser sockeye salmon are descendants of at least two postglacial "races." Variation among lakes within regions was the strongest component of genetic structure, accounting for five times the variation among populations within lakes and more than two times the variation among regions. Extensive historical transplants of eggs and juveniles apparently resulted in lit tle gene flow among regions, but three populations were reestablished or rebuilt as the result of more recent transplants.

Body temperature dynamics of the red squirrel (Tamiasciurus hudsonicus): adaptations for energy conservation

1979 ◽  
Vol 57 (7) ◽  
pp. 1349-1354 ◽  
Author(s):  
Ronald W. Pauls
Keyword(s):  
Body Temperature ◽  
Motor Activity ◽  
Energy Conservation ◽  
Outdoor Environment ◽  
Tamiasciurus Hudsonicus ◽  
Rapid Decline ◽  
Red Squirrel ◽  
Red Squirrels ◽  
Air Temperatures ◽  
Temperature Dynamics

Abdominal temperatures (Tb) of two captive female red squirrels (Tamiasciurus hudsonicus) in a natural outdoor environment were monitored by radiotelemetry at air temperatures (Ta) from −33 to 28 °C. Abdominal temperature ranged from 35.9 to 41.4 °C with values usually less than 39 °C when an animal was in the nest and greater than 39 °C when outside. An increase of Tb to about 39 °C usually occurred before an animal left the nest. In the nest Tb was positively correlated with Ta. Outside the nest there was a weak positive correlation at Ta less than 15 °C and a stronger negative correlation at higher Ta. During subnivean activity a rapid decline in Tb usually occurred. It is suggested that in the nest a low Tb is adaptive in that it results in energy conservation while a higher Tb is required outside the nest for rapid and coordinated motor activity.

Behavioural strategies relevant to the energy economy of the red squirrel (Tamiasciurus hudsonicus)

1978 ◽  
Vol 56 (7) ◽  
pp. 1519-1525 ◽  
Author(s):  
Ronald W. Pauls
Keyword(s):  
Locomotor Activity ◽  
Air Temperature ◽  
Activity Patterns ◽  
Tamiasciurus Hudsonicus ◽  
Temperature Cycle ◽  
Red Squirrel ◽  
Red Squirrels ◽  
Time Out ◽  
Energy Economy ◽  
Behavioural Strategies

Amount and intensity of locomotor activity and time out of the nest were measured for a 1-year period on captive red squirrels (Tamiasciurus hudsonicus) under natural conditions. Daily and annual activity patterns and correlations between activity and meteorological variables were examined. A pronounced annual cycle, in phase with the annual temperature cycle, was found in all three aspects of activity. Daily amount of locomotor activity and time out of the nest were closely correlated with mean daily air temperature. Wind, photoperiod, and air temperature during the preceding week showed a weak but significant correlation with activity. Daily patterns of activity varied seasonally from a distinctly bimodal to a unimodal pattern, with a shift in winter to more midday activity. The relevance of these behavioural strategies to the energy economy of the red squirrel is discussed.

scholarly journals Does selection occur at the intermediate zone of two insufficiently isolated populations? A whole-genome analysis along an altitudinal gradient

2021 ◽  
Author(s):  
Naofumi Yoshida ◽  
Shin-Ichi Morinaga ◽  
Takeshi Wakamiya ◽  
Yuu Ishii ◽  
Shosei Kubota ◽  
...  
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Altitudinal Gradient ◽  
Intermediate Zone ◽  
Adaptive Divergence ◽  
Population Divergence ◽  
Whole Genome ◽  
Isolated Populations ◽  
Whole Genome Analysis ◽  
Single Nucleotide

Abstract Adaptive divergence would occur even between the insufficiently isolated populations when there is a great difference in the environments of their habitats. The individuals present in the intermediate zone of the two divergent populations are expected to have an admixed genetic structure due to gene flow. A selective pressure that acts on the genetically admixed individuals may limit the gene flow and promote the adaptive divergence. Here, we addressed a question whether the selection occurs in the genetically admixed individuals between the divergent populations and assessed its effects on the population divergence. We obtained the whole-genome sequences of a perennial montane plant, Arabidopsis halleri, which has clear phenotypic dimorphisms between altitudes, along an altitudinal gradient of 359–1,317 m with a high spatial resolution (mean altitudinal interval of 20 m). We found the zone where the highland and lowland genes were mixing. Using the FST approach, we found that 35 and 13 genes in the admixed zone had a high frequency of alleles that are accumulated in highland and lowland subpopulations, respectively, suggesting that these genes have been selected in the admixed zone. This selection might limit the gene flow and contribute to the adaptive divergence along the altitudes. In the single-nucleotide polymorphism (SNP)-based analysis, 3,000 out of 27,792 Altitude-Dependent SNPs had extremely high homozygosity in the admixed zone. In 84.7% of these SNPs, the frequency of homozygotes of highland alleles was comparable to that of lowland alleles, suggesting that these alleles are neutral but the heterozygotes were selectively eliminated. The distribution of highland and lowland alleles of these SNPs was not clearly separated between altitudes, implying that such selection did not impede the gene flow. We conclude that the selection occurring at the intermediate altitude affects the genetic structure in the admixed zone and adaptive divergence along the altitudes.

scholarly journals Effect of fire and thinning on fine-scale genetic structure and gene flow in fire-suppressed populations of sugar pine (Pinus lambertiana Douglas)

2018 ◽  
Author(s):  
Brandon M. Lind ◽  
Malcolm P. North ◽  
Patricia E. Maloney ◽  
Andrew J. Eckert
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Sierra Nevada ◽  
Prescribed Fire ◽  
Management Practices ◽  
Fine Scale ◽  
Pinus Lambertiana ◽  
Sugar Pine ◽  
The Impact ◽  
Pine Species

AbstractHistorically, frequent, low-severity fires in dry western North American forests were a major driver of ecological patterns and processes, creating resilient ecosystems dominated by widely-spaced pine species. However, a century of fire-suppression has caused overcrowding, altering forest composition to shade-tolerant species, while increasing competition and leaving trees stressed and susceptible to pathogens, insects, and high-severity fire. Exacerbating the issue, fire incidence is expected to increase with changing climate, while fire season has been observed to begin earlier and last longer than historic trends. Forest thinning and prescribed fire have been identified as important management tools to mitigate these risks. Yet little is known of how thinning, fire, or their interaction affect contemporary evolutionary processes of constituent pine species that influence fitness and play an important role in the opportunity for selection and population persistence. We assessed the impact of widely used fuel reduction treatments and prescribed fire on fine-scale gene flow on an ecologically important and historically dominant shade-intolerant pine species of the Sierra Nevada, Pinus lambertiana Dougl. Treatment prescription (no-thin-no-fire, thin-no-fire, and fire-and-thin) was found to differentially affect both fine-scale spatial and genetic structure as well as effective gene flow in this species. Specifically, the thin-no-fire prescription increases genetic structure (spatial autocorrelation of relatives) between adults and seedlings, while seed and pollen dispersal increase and decrease, respectively, as a function of increasing disturbance intensity. While these results may be specific to the stands at our study site, they indicate how assumptions relating to genetic effects based on spatial structure can be misleading. It is likely that these disequilibrated systems will continue to evolve on unknown evolutionary trajectories. The long-term impacts of management practices on reduced fitness from inbreeding depression should be continually monitored to ensure resilience to increasingly frequent and severe fire, drought, and pest stresses.

scholarly journals GENE FLOW AND THE GEOGRAPHICAL DISTRIBUTION OF A MOLECULAR POLYMORPHISM IN DROSOPHILA PSEUDOOBSCURA

Genetics ◽  
1981 ◽  
Vol 98 (1) ◽  
pp. 157-178
Author(s):  
J S Jones ◽  
S H Bryant ◽  
R C Lewontin ◽  
J A Moore ◽  
T Prout
Keyword(s):  
Gene Flow ◽  
Genetic Structure ◽  
Geographical Distribution ◽  
Enzyme Polymorphism ◽  
Seasonal Abundance ◽  
Drosophila Pseudoobscura ◽  
Isolated Population ◽  
Molecular Polymorphism ◽  
Isolated Populations ◽  
High Level

ABSTRACT This paper discusses the relation between the geographical distribution of an enzyme polymorphism and population structure in Drosophila pseudoobscura. California populations of this species living in very different montane and lowland habitats separated by several kilometers are similar to each other in the frequency of an esterase allele. Previous estimates suggest that gene flow is too limited to account for this homogeneity of genetic structure, so that it must reflect some balancing force of natural selection. We show, however, that dispersal over unfavorable habitats is much greater than earlier supposed. Isolated populations of D. pseudoobscura separated by 15 km from other populations are subject to large amounts of immigration. This is shown by changes in the seasonal abundance of this species and in the annual pattern of lethal alleles in such populations. The genetic structure of an experimentally perturbed isolated population in an oasis returned to normal within a single year, suggesting that such populations are ephemeral and that the oasis is subject to annual recolonization by distant migrants. Direct assessment of marked flies shows that they can move at least 10 km in 24 hours over a desert. Such extensive gene flow may help explain the distribution of the esterase allele, and is relevant to the high level of molecular polymorphism and its general lack of geographic differentiation throughout the range of D. pseudoobscura.

scholarly journals Cavity Nest Materials of Northern Flying Squirrels, Glaucomys sabrinus, and North American Red Squirrels, Tamiasciurus hudsonicus, in a Secondary Hardwood Forest of Southern Ontario

2007 ◽  
Vol 121 (3) ◽  
pp. 303 ◽  
Author(s):  
Jesse E. H. Patterson ◽  
Stephen J. Patterson ◽  
Ray J. Malcolm
Keyword(s):  
Hardwood Forest ◽  
Tamiasciurus Hudsonicus ◽  
Glaucomys Sabrinus ◽  
Red Squirrels ◽  
Southern Ontario ◽  
Flying Squirrels ◽  
Northern Flying Squirrels ◽  
Cavity Nest ◽  
North American Red Squirrels ◽  
Nest Materials

Through deployment of artificial nest boxes, we examined the composition of cavity nest materials used by Northern Flying Squirrels (Glaucomys sabrinus) and North American Red Squirrels (Tamiasciurus hudsonicus) in a secondary hardwood forest of southern Ontario, Canada. We collected 32 nests of known species association and found that 85.7% of G. sabrinus nests and 77.8% of T. hudsonicus nests were constructed almost entirely of shredded bark from Eastern White Cedar (Thuja occidentalis). Mean nest depth across all samples was 12.2 cm and showed no significant difference between species or between spring and summer nests. We review the antiparasitic properties of T. occidentalis and suggest that the use of shredded cedar bark by G. sabrinus and T. hudsonicus to line nest cavities may be a behavioural adaptation, which reduces ectoparasite loads in the nest environment.

Female Red Squirrel (Tamiasciurus hudsonicus) Reproductive Tracts from Fenitrothion Treated and Untreated Forest of Southeastern New Brunswick

1986 ◽  
Vol 62 (4) ◽  
pp. 233-235 ◽  
Author(s):  
Louis LaPierre
Keyword(s):  
New Brunswick ◽  
Coniferous Forest ◽  
Tamiasciurus Hudsonicus ◽  
Corpora Lutea ◽  
Red Squirrel ◽  
Probability Level ◽  
Red Squirrels ◽  
August 15Th ◽  
Student’S T ◽  
Student’S T Test

Between August 15th and September 15th 1979, 1980 and 1981, 77 and 74 red squirrels, Tamiasciurus hudsonicus, were captured within the sprayed and unsprayed coniferous forest of southeastern New Brunswick. Following live capture, the squirrels were sacrificed, weighed and the reproductive tracts were removed and preserved in a 10% formalin solution.Counts of placental scars and corpora lutea of squirrels that inhabited the sprayed forest had a mean placental scar count of 3.8 and a mean corpora lutea count of 4.2. Squirrels from the unsprayed coniferous forest had a mean placental count of 3.6 and a corpora lutea count of 3.9. Statistical analyses, using the student's T-test with a probability level of 0.05, revealed no significant differences in reproductive success of the two groups of squirrels.

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