Population genetic structure of tailed frogs (Ascaphus truei) in clearcut and old-growth stream habitats in south coastal British Columbia

2005 ◽  
Vol 83 (11) ◽  
pp. 1460-1468 ◽  
Author(s):  
T R Wahbe ◽  
C Ritland ◽  
F L Bunnell ◽  
K Ritland

Ascaphus truei Stejneger, 1899 relies on cool, fast-flowing, forested mountain streams, which receive little protection from logging activities. During recovery of post-logging habitats, local extirpation of Ascaphus is a concern because their recolonization may be slow. In British Columbia, Oregon, and California, coastal Ascaphus populations are designated as "at risk". To infer fragmentation impacts from patterns of genetic structure, we used RAPD molecular markers and compared population genetic structures of Ascaphus larvae in an old growth with an adjacent clearcut stream located in coastal British Columbia. In the clearcut, larvae were less genetically diverse than in the old growth and exhibited no relationship between physical distance and genetic relatedness, whereas in the old growth, genetic similarity decreased with physical distance. Patterns of gene flow between the clearcut and old-growth streams were significantly different. The clearcut population went through a bottleneck/founding event, but also exhibited greater dispersal. The frogs were perhaps searching for new habitat (which would lower isolation by distance) and suffering mortality (which would decrease diversity). Most problems in conservation will require genetic and ecological data, and future research should aim to incorporate methodologies from both fields.

2020 ◽  
Vol 13 ◽  
pp. 194008292094917
Author(s):  
Misael D. Mancilla-Morales ◽  
Santiago Romero-Fernández ◽  
Araceli Contreras-Rodríguez ◽  
José J. Flores-Martínez ◽  
Víctor Sánchez-Cordero ◽  
...  

Estimations on the influence of evolutionary and ecological forces as drivers of population gene diversity and genetic structure have been performed on a growing number of colonial seabirds, but many remain poorly studied. In particular, the population genetic structure of storm-petrels (Hydrobatidae) has been evaluated in only a few of the 24 recognized species. We assessed the genetic diversity and population structure of the Black Storm-Petrel ( Hydrobates melania) and the Least Storm-Petrel ( Hydrobates microsoma) in the Gulf of California. The two species were selected because they are pelagic seabirds with comparable ecological traits and breeding grounds. Recent threats such as introduced species of predators and human disturbance have resulted in a decline of many insular vertebrate populations in this region and affected many different aspects of their life histories (ranging from reproductive success to mate selection), with a concomitant loss of genetic diversity. To elucidate to what extent the population genetic structure occurs in H. melania and H. microsoma, we used 719 base pairs from the mitochondrial cytochrome oxidase c subunit I gene. The evaluation of their molecular diversity, genetic structure, and gene flow were performed through diversity indices, analyses of molecular and spatial variance, and isolation by distance (IBD) across sampling sites, respectively. The population genetic structure (via AMOVA and SAMOVA) and isolation by distance (pairwise p-distances and FST/1– FST (using ΦST) were inferred for H. microsoma. However, for H. melania evidence was inconclusive. We discuss explanations leading to divergent population genetic structure signatures in these species, and the consequences for their conservation.


2014 ◽  
Vol 10 (8) ◽  
pp. 20140255 ◽  
Author(s):  
Jennifer A. H. Koop ◽  
Karen E. DeMatteo ◽  
Patricia G. Parker ◽  
Noah K. Whiteman

Understanding the mechanisms driving the extraordinary diversification of parasites is a major challenge in evolutionary biology. Co-speciation, one proposed mechanism that could contribute to this diversity is hypothesized to result from allopatric co-divergence of host–parasite populations. We found that island populations of the Galápagos hawk ( Buteo galapagoensis ) and a parasitic feather louse species ( Degeeriella regalis ) exhibit patterns of co-divergence across variable temporal and spatial scales. Hawks and lice showed nearly identical population genetic structure across the Galápagos Islands. Hawk population genetic structure is explained by isolation by distance among islands. Louse population structure is best explained by hawk population structure, rather than isolation by distance per se , suggesting that lice tightly track the recent population histories of their hosts. Among hawk individuals, louse populations were also highly structured, suggesting that hosts serve as islands for parasites from an evolutionary perspective. Altogether, we found that host and parasite populations may have responded in the same manner to geographical isolation across spatial scales. Allopatric co-divergence is likely one important mechanism driving the diversification of parasites.


1954 ◽  
Vol 32 (5) ◽  
pp. 630-653 ◽  
Author(s):  
G. P. Thomas ◽  
R. W. Thomas

An investigation of Douglas fir, Pseudotsuga taxifolia (Poir.) Britton, in coastal British Columbia has shown that decay losses in old-growth stands are low, amounting to 2.6 and 7.3% of the gross volume of living and combined living and dead trees respectively. Twenty-five decay-producing fungi were isolated from living trees and 29 from dead trees. The most important of these were Fomes pini (Thore) Lloyd, Polyporus schweinitzii Fries, and Fomes pinicola (Sw.) Cke. Certain irregularities in the occurrence of decay-producing fungi and the amounts of decay associated with them were traced to the influences of site, tree age or size, latitude, and stand history. Root infections were the most frequent but branch-stub infections caused the greatest average amount of decay. An examination of tree abnormalities showed that a select group of them, sporophores and swollen knots of Fomes pini in particular, are useful indicators of hidden decay. A separate analysis of dead trees has shown that they occasion ally form a high proportion of Douglas fir stands and that much of the wood in such trees is sound.


Botany ◽  
2009 ◽  
Vol 87 (11) ◽  
pp. 1089-1095 ◽  
Author(s):  
Stephen B. Heard ◽  
Linley K. Jesson ◽  
Kirby Tulk

The Gulf of St. Lawrence aster ( Symphyotrichum laurentianum (Fernald) G.L. Nesom) is an endemic annual of saline habitats in the southern Gulf of St. Lawrence. It is listed as a threatened species, and has recently experienced population declines in much of its range. We used 11 allozyme markers to assay population genetic variation in six wild populations of S. laurentianum from the Magdalen Islands, Quebec (QC), the only remaining wild population from Prince Edward Island National Park (PEI), and a greenhouse population founded in 1999 with seed collected from PEI. Symphyotrichum laurentianum harbours moderate genetic diversity (Ps = 0.36, As = 1.54), with only modest spatial genetic structure (pairwise FST < 0.15) and no significant isolation by distance. The PEI population had greatly reduced allelic diversity compared with the populations from the Magdalen Islands, which likely act as a reservoir of genetic variation in S. laurentianum. Recent loss of alleles during population decline in PEI is suggested by the retention of greater allelic diversity in the greenhouse population. Estimates of breeding structure suggest small but nonzero rates of outcross pollination (FIS = 0.73, 95% CI = 0.48–0.97; outcrossing rate ∼16%). Population genetic structure in S. laurentianum can inform those forming and carrying out conservation and recovery plans for this threatened species.


2021 ◽  
Author(s):  
◽  
Clare Louise Gebbie

<p>Parapercis colias (blue cod) is an endemic temperate reef fish that supports an important commercial and recreational fishery in New Zealand. However, concerns have been raised about localized stock depletion, and multiple lines of evidence have suggested P. colias may form several biologically distinct populations within the New Zealand Exclusive Economic Zone. Mark and recapture studies along with otolith and stable isotope studies have indicated that individuals are sedentary with very limited movement beyond the scale of 10-20km. The primary goal of this research was to advance the current knowledge of P. colias population genetic structure. This information can be incorporated into stock assessment models with the aim of improving the management of the P. colias fishery. This study made use of 454 pyrosequencing technology to isolate and develop the first set of microsatellite DNA markers for P. colias. These seven microsatellite loci, along with mitochondrial control region sequences, were used to determine the levels of genetic variation and differentiation between sites around the New Zealand coastline, including the Chatham Islands.  Significant differentiation was observed between the Chatham Islands and mainland New Zealand sample sites, indicating that these two regions form distinct populations. Interpretation of the results for the mainland sites was more complex. Mitochondrial sequence data detected no significant pairwise differentiation between mainland sites, although a pattern of isolation-by-distance was observed. However, evidence for genetic differentiation among mainland sites was weak based on the microsatellite DNA analysis. Although pairwise Gѕт levels were significant in some sites, this was not reflected in principal component analysis or Bayesian structure analysis. It is likely that through long range dispersal, migration is at or above the threshold for genetic connectivity, but below a level necessary for demographic connectivity. This is indicated by both the genetic structure reported here, along with previous studies showing limited dispersal of P. colias.</p>


Botany ◽  
2018 ◽  
Vol 96 (12) ◽  
pp. 851-857 ◽  
Author(s):  
T.E. Reimchen ◽  
Estelle Arbellay

Tree-ring studies using increment cores have increasingly measured elemental (N) and isotopic (δ15N) nitrogen values to evaluate environmental changes in the nitrogen cycle. The paucity of nitrogen in wood has constrained tree-ring analyses to annual resolution. Based on 77 rings and 310 sub-rings, we provide evidence for substantial intra-annual variability in N and δ15N values in the heartwood of 11 geographically widely separated, old growth Sitka spruce [Picea sitchensis (Bong.) Carrière] trees from coastal British Columbia. The range of N and δ15N values within rings (intra-annual level) was on average equal to or up to seven-times the range among rings (inter-annual level). Most rings showed a seasonal reduction in N values from early to late growth and a corresponding increase to the early growth of the following season (P < 0.05 to 0.001, Mann–Whitney–Wilcoxon test). By contrast, intra-annual changes in δ15N values were highly variable among years and among trees, ranging from pronounced oscillations (4.0‰) to reasonable consistency. Our results allude to the potential importance of such intra-ring data for interpreting seasonal trends in nitrogen use and increasing understanding of ecological processes in the marine–terrestrial interface.


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