Population structure and stock identification of sockeye salmon (Oncorhynchus nerka) in coastal lakes in British Columbia, Canada

2005 ◽  
Vol 83 (6) ◽  
pp. 834-844 ◽  
Author(s):  
T D Beacham ◽  
B McIntosh ◽  
C MacConnachie
Keyword(s):  
British Columbia ◽  
Population Structure ◽  
Microsatellite Loci ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Coastal Lakes ◽  
Queen Charlotte Islands ◽  
Accuracy And Precision ◽  
The Mean ◽  
Mixed Stock

Population structure of sockeye salmon, Oncorhynchus nerka (Walbaum, 1792), from coastal lakes in British Columbia was determined from a survey of variation of 14 microsatellite loci, with approximately 6400 sockeye salmon analyzed from 40 populations. Populations from the Queen Charlotte Islands displayed fewer alleles per locus than did populations in other regions. Genetic differentiation among the populations surveyed was observed, with the mean FST for all loci being 0.077 (SD = 0.006). Differentiation among populations was approximately 13 times greater than annual variation within populations. Regional structuring of the populations surveyed was observed. The accuracy and precision of the estimated stock compositions generally increased as the number of observed alleles at the loci increased. Simulated mixed-stock samples generated from observed population frequencies in different regions suggested that variation at microsatellite loci provided reasonably accurate and precise estimates of stock composition for potential samples from marine or freshwater fisheries.

Fecundity and Egg Retention of Some Sockeye Salmon (Oncorhynchus nerka) Stocks in British Columbia

1986 ◽  
Vol 43 (8) ◽  
pp. 1643-1655 ◽  
Author(s):  
J. I. Manzer ◽  
I. Miki
Keyword(s):  
British Columbia ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Absolute Fecundity ◽  
Egg Retention ◽  
Inadequate Sample Size ◽  
Egg Number ◽  
The Mean ◽  
The Relationship ◽  
Individual Fecundity

The fecundity and egg retention of anadromous female sockeye salmon (Oncorhynchus nerka) collected during 1971–82 from several stocks in British Columbia undergoing controlled fertilization to enhance adult sockeye production were examined. The relationship between egg number and postorbital–hypural length based on 863 females representing 14 stocks was not consistent between all age-types, stocks, and years, probably because of inadequate sample size in some instances. Combined samples, however, revealed a significant positive relationship between postorbital–hypural length and egg number for age 1.2, 1.3, and 2.2 females. Mean absolute fecundity for the respective age-types was 3218, 4125, and 3544 eggs. For samples of 10 or more females, significant stock and annual differences were detected when individual mean absolute fecundity was adjusted to a postorbital–hypural length of 447 mm, but not for females of different age. A comparison of mean fecundities for coastal stocks with historical data for interior British Columbia stocks suggests that coastal stocks are 18% more fecund than interior stocks. Possible causal mechanisms for this regional difference are hypothesized. Examination of 796 carcasses (representing five stocks) for egg retention revealed a range from totally spawned to totally unspawned females, with 56% of the carcasses containing 20 eggs or less and 68% containing 50 eggs or less. The mean egg retention based on all samples combined was estimated to be 6.5% of the mean individual fecundity. This value was reduced to 3.9% when stock means were averaged.

scholarly journals Importance of sample size for estimating prevalence: A case example of infectious hematopoietic necrosis viral RNA detection in mixed-stock Fraser River Sockeye salmon (Oncorhynchus nerka), British Columbia, Canada.

2020 ◽  
Author(s):  
Emilie Laurin ◽  
Julia Bradshaw ◽  
Laura Hawley ◽  
Ian A. Gardner ◽  
Kyle A Garver ◽  
...  
Keyword(s):  
British Columbia ◽  
Sample Size ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Small Sample ◽  
Viral Rna ◽  
Sample Sizes ◽  
Apparent Prevalence ◽  
Infectious Hematopoietic Necrosis ◽  
Mixed Stock

Proper sample size must be considered when designing infectious-agent prevalence studies for mixed-stock fisheries, because bias and uncertainty complicate interpretation of apparent (test)-prevalence estimates. Sample size varies between stocks, often smaller than expected during wild-salmonid surveys. Our case example of 2010-2016 survey data of Sockeye salmon (Oncorhynchus nerka) from different stocks of origin in British Columbia, Canada, illustrated the effect of sample size on apparent-prevalence interpretation. Molecular testing (viral RNA RT-qPCR) for infectious hematopoietic necrosis virus (IHNv) revealed large differences in apparent-prevalence across wild salmon stocks (much higher from Chilko Lake) and sampling location (freshwater or marine), indicating differences in both stock and host life-stage effects. Ten of the 13 marine non-Chilko stock-years with IHNv-positive results had small sample sizes (< 30 samples per stock-year) which, with imperfect diagnostic tests (particularly lower diagnostic sensitivity), could lead to inaccurate apparent-prevalence estimation. When calculating sample size for expected apparent prevalence using different approaches, smaller sample sizes often led to decreased confidence in apparent-prevalence results and decreased power to detect a true difference from a reference value.

Identification of Sockeye Salmon (Oncorhynehus nerka) Stocks in Mixed-stock Fisheries in British Columbia and Southeast Alaska using Biological Markers

1989 ◽  
Vol 46 (12) ◽  
pp. 2108-2120 ◽  
Author(s):  
Chris C. Wood ◽  
Dennis T. Rutherford ◽  
Skip McKinnell
Keyword(s):  
British Columbia ◽  
Biological Markers ◽  
Sockeye Salmon ◽  
Annual Variation ◽  
Stock Identification ◽  
Southeast Alaska ◽  
Accuracy And Precision ◽  
Biochemical Genetic ◽  
Mixed Stock ◽  
Reference Samples

We demonstrate the present analytical capability and the potential for coast-wide stock identification of sockeye salmon (Oncorhynchus nerka) using reference sampling data from 51 principal stocks in British Columbia and Southeast Alaska situated between the Fraser and Taku Rivers. We evaluate the relative accuracy and precision of stock composition estimates from maximum likelihood mixture analysis with four types of biological markers, either alone or in combination; these include freshwater age, six scale pattern variables, the prevalence of the brain parasite Myxobolus neurobius, and five biochemical genetic (electrophoretic) traits. Using all markers in combination, estimates of mixing proportions for all test mixtures are acceptable for most purposes (roughly ± 10% with 95% confidence) providing all samples are representative and mixture samples are large ([Formula: see text] fish). The reliability of these estimates is greatly reduced when reference samples are corrupted to simulate observed annual variation in scale pattern markers. Annual variation may preclude the use of scale pattern markers for complicated stock identification problems where representative reference samples cannot be obtained annually, or until after the fishing period. In contrast, no significant annual variation is detectable for biochemical genetic and brain parasite markers in stocks that have been sampled repeatedly. Using only these stable markers, contributions from about 15 different groups of the 51 stocks can be estimated with acceptable precision, but in general, estimates for individual stocks are unreliable.

Environmental and Parental Influences on Age at Maturity in Sockeye Salmon (Oncorhynchus nerka) from the Fraser River, British Columbia

1986 ◽  
Vol 43 (2) ◽  
pp. 269-274 ◽  
Author(s):  
Randall M. Peterman ◽  
Michael J. Bradford ◽  
Judith L. Anderson
Keyword(s):  
British Columbia ◽  
Age Structure ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Data Series ◽  
Fraser River ◽  
Age At Maturity ◽  
Long Term Effects ◽  
River Population ◽  
The Mean

Commercial fisheries possess the potential for applying strong selection on size or age at maturity in the populations they exploit. It is therefore important to know the extent to which these traits are inherited. We examined regressions of the mean age at maturity of cohorts of offspring on the mean ages of the female and male spawners which produced them for four populations of sockeye salmon (Oncorhynchus nerka) from the Fraser River, British Columbia. Unlike previous researchers, we found that neither genetic nor maternal effects are important, relative to environmental variables, in influencing year-to-year variation in age at maturity in these stocks. The differences between our findings and earlier ones are due to a longer data series and more complete population statistics than were available previously. We further analyzed the age structure of the Adams River population, which has a cyclic pattern of abundance. Fluctuating population density appeared to account for variation in age structure among cycle years in the Adams stock. We concluded that serious concerns about the long-term effects of size-selective fishing on mean age at maturity are probably not warranted for Fraser River sockeye.

The Effect of reduction of Predaceous Fish on survival of young Sockeye Salmon at Cultus Lake

1941 ◽  
Vol 5b (4) ◽  
pp. 315-336 ◽  
Author(s):  
R. E. Foerster ◽  
W. E. Ricker
Keyword(s):  
British Columbia ◽  
Survival Rate ◽  
Sockeye Salmon ◽  
Coho Salmon ◽  
Oncorhynchus Nerka ◽  
First Year ◽  
The Mean ◽  
Control Work ◽  
The Cost ◽  
Gill Netting

By persistent gill-netting in Cultus lake, British Columbia, the predaceous fish which feed on young sockeye (Oncorhynchus nerka) have been considerably, though unevenly, reduced in numbers. The populations of squawfish and char, of lengths greater than 200 millimetres, were reduced in three years to about 1/10 of their original numbers. The abundance of trout and coho salmon have been much less affected by netting, if at all, though a considerable number have been killed. From the first year of control operations the survival rate of young sockeye salmon was considerably increased. In the three years which have been tested, the mean survival rate has been increased three and a third times over average conditions prior to control. In absolute figures, this represents 3,800,000 migrants saved, which are expected to yield 380,000 adult sockeye. Even disregarding the important cumulative future increase, the immediate return from the work is a quantity of sockeye whose value is many times greater than the cost of control work.

Responses of Sockeye Salmon (Oncorhynchus nerka) to Fertilization of British Columbia Coastal Lakes

1985 ◽  
Vol 42 (2) ◽  
pp. 320-331 ◽  
Author(s):  
Kim D. Hyatt ◽  
John G. Stockner
Keyword(s):  
British Columbia ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Trophic Levels ◽  
Phosphorus Fertilizer ◽  
Nitrogen And Phosphorus ◽  
Coastal Lakes ◽  
Standing Stocks ◽  
Marine Survival ◽  
Heterotrophic Production

Addition of nitrogen and phosphorus fertilizer to several British Columbia coastal lakes has resulted in increased autotrophic and heterotrophic production and larger standing stocks of zooplankton. These changes at the primary and secondary trophic levels are reflected by increased in-lake growth of juvenile sockeye salmon (Oncorhynchus nerka) and larger outmigrant smolts. Evidence is presented that smolt size changes in fertilized lakes will lead to increases in the harvestable surplus of sockeye adults by promoting both increases in marine survival and an earlier age-at-return to the fishery.

A comparison of stock and individual identification for sockeye salmon (Oncorhynchus nerka) in British Columbia provided by microsatellites and single nucleotide polymorphisms

2010 ◽  
Vol 67 (8) ◽  
pp. 1274-1290 ◽  
Author(s):  
Terry D. Beacham ◽  
B. McIntosh ◽  
C. Wallace
Keyword(s):  
British Columbia ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Individual Identification ◽  
Stock Identification ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide ◽  
Individual Assignment ◽  
Assignment Accuracy ◽  
Accuracy And Precision

Variation at 14 microsatellite loci, one major histocompatibility complex (MHC) locus, and 49 single nucleotide polymorphism (SNPs) loci was surveyed in 44 populations of sockeye salmon ( Oncorhynchus nerka ) over 16 regions from southern and central British Columbia, Canada. Sequential addition of the five highest rated SNPs to the suite of 14 microsatellites provided the equivalent average accuracy when compared with the current suite of microsatellites and MHC. Six microsatellites provided the equivalent average stock identification resolution and individual assignment accuracy compared with 46 SNPs. For regional stock compositions, 53–104 SNPs were projected to be required to provide accuracy and precision equivalent to the microsatellites. For population-specific stock compositions, 75–79 SNPs were projected to be required to provide accuracy and precision equivalent to the microsatellites. Equivalency in individual assignment accuracy to region was estimated to require 100 SNPs of the quality evaluated in the study, whereas equivalent accuracy in assignment to specific populations was estimated to require 124 SNPs. Applications that incorporate the existing power of a combined microsatellite–SNP approach are the best current technique available for sockeye salmon stock identification applications in southern British Columbia.

The genetic population structure of lacustrine sockeye salmon, Oncorhynchus nerka, in Japan as the endangered species

2011 ◽  
Vol 92 (4) ◽  
pp. 539-550 ◽  
Author(s):  
Yuichiro Kogura ◽  
James E. Seeb ◽  
Noriko Azuma ◽  
Hideaki Kudo ◽  
Syuiti Abe ◽  
...  
Keyword(s):  
Population Structure ◽  
Endangered Species ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Genetic Population Structure ◽  
Genetic Population

Infectious agent detections in archived Sockeye salmon (Oncorhynchus nerka ) samples from British Columbia, Canada (1985-94)

2019 ◽  
Vol 42 (4) ◽  
pp. 533-547 ◽  
Author(s):  
Krishna K. Thakur ◽  
Raphaël Vanderstichel ◽  
Karia Kaukinen ◽  
Omid Nekouei ◽  
Emilie Laurin ◽  
...  
Keyword(s):  
British Columbia ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Infectious Agent

Recent Colonization of a Major Salmon-Producing Lake in British Columbia by Pacific Lamprey (Lampetra tridentata)

1984 ◽  
Vol 41 (2) ◽  
pp. 278-285 ◽  
Author(s):  
Susan P. Farlinger ◽  
Richard J. Beamish
Keyword(s):  
British Columbia ◽  
Sockeye Salmon ◽  
Oncorhynchus Nerka ◽  
Nursery Area ◽  
Commercial Fishery ◽  
Rock Slide ◽  
Pacific Lamprey ◽  
Natural Lake ◽  
Lampetra Tridentata

Pacific lamprey (Lampetra tridentata) were first observed in Babine Lake, the largest natural lake wholly contained in British Columbia, in 1963 and are currently found along approximately 15% of the length of the lake near the outlet. The number of spawning adults in 1982 was estimated to be 7281. Since Babine Lake is a major nursery area for sockeye salmon (Oncorhynchus nerka), the colonization of this lake by a parasitic lamprey is of concern, particularly if the species can become nonanadromous. The colonization may be beneficial if a commercial fishery can be sustained and if the species does not begin to feed in freshwater. The reason for the recent colonization is unknown but it coincides with increased human manipulation of fishes and habitat, including the removal of a major rock slide, 65 km downstream of the lake.

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