Mitochondrial DNA sequence variation and the specific identification of deer mice (Peromyscus) from Triangle Island, British Columbia, Canada

2001 ◽  
Vol 79 (12) ◽  
pp. 2257-2260 ◽  
Author(s):  
Scott E Chirhart ◽  
Roozbeh Arianpour ◽  
Rodney L Honeycutt ◽  
Ira F Greenbaum
Keyword(s):  
British Columbia ◽  
Mitochondrial Dna ◽  
Deer Mouse ◽  
Population Sample ◽  
Sequence Divergence ◽  
Deer Mice ◽  
Island Population ◽  
Dna Sequence Variation ◽  
Reference Samples ◽  
Formal Recognition

Nucleotide sequences from the ND3, ND4L, and ND4 genes of the mitochondrial DNA of deer mice (Peromyscus) from Triangle Island, British Columbia, were analyzed and compared with those from reference samples of the geographically proximal species Peromyscus maniculatus and Peromyscus keeni. Variation among the deer mice from Triangle Island comprised four sequences with a total sequence divergence of 0.093%. One of these sequences characterized 52% of the 27 individuals analyzed; each of the other sequence variants occurred in smaller, but similar, proportions of the population sample. Phylogenetic and distance-clustering analyses uniformly grouped the sequences from the Triangle Island population and placed them within a cluster otherwise comprised of the P. keeni reference samples. The reference samples of P. maniculatus clustered distinctly and significantly outside of the P. keeni/Triangle Island deer mouse assemblage. These data indicate that, in contradiction to their current formal recognition as P. maniculatus, the deer mice from Triangle Island are representative of, and should be taxonomically relegated to, P. keeni.

Demography of populations of deer mice in coastal forest and clear-cut (logged) habitats

1979 ◽  
Vol 57 (8) ◽  
pp. 1636-1648 ◽  
Author(s):  
Thomas P. Sullivan
Keyword(s):  
British Columbia ◽  
Deer Mouse ◽  
Late Summer ◽  
Average Density ◽  
Deer Mice ◽  
First Year ◽  
Coastal Forest ◽  
Juvenile Male ◽  
Clear Cut ◽  
Clear Cutting

This study was designed to test the widely held hypothesis that clear-cut (logged) habitats support higher density populations of Peromyscus than do forested habitats. Deer mouse populations were livetrapped in forest and clear-cut habitats at Maple Ridge, British Columbia, from May 1975 to April 1978. The average density of mice per hectare in the forest was 19.6(1975), 15.8(1976), 22.3(1977), and on the clear-cut areas was 23.3(1975), 16.6(1976), 29.9(1977). The slightly higher number of animals on the clear-cutting in 1975 and 1977 reflected a burst of recruitment in the late summer and fall of each year. The density of mice on clear-cut areas declined during each winter to a level comparable with that of the forest. Juvenile male deer mice were able to enter into the clear-cutting populations during the breeding season in the first year after logging. Recently logged areas may be acting as dispersal or behavioural sinks.

scholarly journals SARS-CoV-2 infection and transmission in the North American deer mouse

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Bryan D. Griffin ◽  
Mable Chan ◽  
Nikesh Tailor ◽  
Emelissa J. Mendoza ◽  
Anders Leung ◽  
...  
Keyword(s):  
Respiratory Tract ◽  
North American ◽  
Direct Contact ◽  
Lower Respiratory Tract ◽  
Infectious Virus ◽  
Deer Mouse ◽  
Deer Mice ◽  
The North ◽  
Wild Deer ◽  
Theoretical Risk

AbstractWidespread circulation of SARS-CoV-2 in humans raises the theoretical risk of reverse zoonosis events with wildlife, reintroductions of SARS-CoV-2 into permissive nondomesticated animals. Here we report that North American deer mice (Peromyscus maniculatus) are susceptible to SARS-CoV-2 infection following intranasal exposure to a human isolate, resulting in viral replication in the upper and lower respiratory tract with little or no signs of disease. Further, shed infectious virus is detectable in nasal washes, oropharyngeal and rectal swabs, and viral RNA is detectable in feces and occasionally urine. We further show that deer mice are capable of transmitting SARS-CoV-2 to naïve deer mice through direct contact. The extent to which these observations may translate to wild deer mouse populations remains unclear, and the risk of reverse zoonosis and/or the potential for the establishment of Peromyscus rodents as a North American reservoir for SARS-CoV-2 remains unknown.

scholarly journals Genetic Diversities and Historical Dynamics of Native Ethiopian Horse Populations (Equus caballus) Inferred from Mitochondrial DNA Polymorphisms

Genes ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 155
Author(s):  
Kefena Effa ◽  
Sonia Rosenbom ◽  
Jianlin Han ◽  
Tadelle Dessie ◽  
Albano Beja-Pereira
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Genetic Differentiation ◽  
Sequence Divergence ◽  
Dna Polymorphisms ◽  
Base Pairs ◽  
Feral Horses ◽  
Domestic Horses ◽  
D Loop ◽  
Diversity Estimates

Matrilineal genetic diversity and relationship were investigated among eight morphologically identified native Ethiopian horse populations using polymorphisms in 46 mtDNA D-loop sequences (454 base pairs). The horse populations identified were Abyssinian, Bale, Borana, Horro, Kafa, Kundido feral horses, Ogaden and Selale. Mitochondrial DNA D-loop sequences were characterized by 15 variable sites that defined five different haplotypes. All genetic diversity estimates, including Reynolds’ linearized genetic distance, genetic differentiation (FST) and nucleotide sequence divergence (DA), revealed a low genetic differentiation in native Ethiopian horse populations. However, Kundido feral and Borana domestic horses were slightly diverged from the rest of the Ethiopian horse populations. We also tried to shed some light on the matrilineal genetic root of native Ethiopian horses from a network constructed by combining newly generated haplotypes and reference haplotypes deposited in the GenBank for Eurasian type Turkish Anatolian horses that were used as a genetic conduit between Eurasian and African horse populations. Ninety-two haplotypes were generated from the combined Ethio-Eurasian mtDNA D-loop sequences. A network reconstructed from the combined haplotypes using Median-Joining algorithm showed that haplotypes generated from native Ethiopian horses formed separate clusters. The present result encourages further investigation of the genetic origin of native African horses by retrieving additional mtDNA sequences deposited in the GenBank for African and Eurasian type horses.

Sequence variation and evolution of nuclear DNA in man and the primates

1981 ◽  
Vol 292 (1057) ◽  
pp. 133-142 ◽  
Keyword(s):  
Dna Sequence ◽  
Sequence Variation ◽  
Nuclear Dna ◽  
Sequence Divergence ◽  
Gene Arrangement ◽  
Human Populations ◽  
Genetic Changes ◽  
Detailed Structural Analysis ◽  
Dna Sequence Variation ◽  
History Of

Recent advances in nucleic acid technology have facilitated the detection and detailed structural analysis of a wide variety of genes in higher organisms, including those in man. This in turn has opened the way to an examination of the evolution of structural genes and their surrounding and intervening sequences. In a study of the evolution of haemoglobin genes and neighbouring sequences in man and the primates, we have investigated gene arrangement and DNA sequence divergence both within and between species ranging from Old World monkeys to man. This analysis is beginning to reveal the evolutionary constraints that have acted on this region of the genome during primate evolution. Furthermore, DNA sequence variation, both within and between species, provides, in principle, a novel and powerful method for determining inter-specific phylogenetic distances and also for analysing the structure of present-day human populations. Application of this new branch of molecular biology to other areas of the human genome should prove important in unravelling the history of genetic changes that have occurred during the evolution of man.

The ecology of the deer mouse Peromyscus maniculatus in a coastal coniferous forest. II. Reproduction

1974 ◽  
Vol 52 (1) ◽  
pp. 119-131 ◽  
Author(s):  
R. M. F. S. Sadleir
Keyword(s):  
Deer Mouse ◽  
Coniferous Forest ◽  
Deer Mice ◽  
Reproductive Phenology ◽  
Corpora Lutea ◽  
Temperature Changes ◽  
Four Seasons ◽  
Different Types ◽  
Breeding Condition ◽  
Breeding Seasons

The duration and intensity of reproduction in deer mice was followed for four seasons by live and dead trapping. Three populations living in different types of forest habitat had synchronous breeding seasons, although there were major differences between years in the time of onset and cessation of breeding and in the proportion of females in breeding condition. No consistent relationships were found between either density changes or the incidence of parasitism and reproductive phenology. In the absence of overt food fluctuations there was a relationship between unseasonable temperature changes and breeding. Sudden increases in temperature may have stimulated the onset of breeding but its cessation before the autumn equinox was always associated with a considerable decrease in temperature if this occurred after April. In 57 pregnancies the corpora lutea count was 4.75 ± 1.12 and embryo count was 4.52 ± 1.16. [Formula: see text].

Tail length evolution in deer mice: linking morphology, behavior and function

2021 ◽  
Author(s):  
Emily R Hager ◽  
Hopi E Hoekstra
Keyword(s):  
Computational Models ◽  
Deer Mouse ◽  
Center Of Mass ◽  
Tail Length ◽  
Single Species ◽  
Deer Mice ◽  
Length Variation ◽  
Caudal Vertebrae ◽  
Long Tails ◽  
And Function

Abstract Determining how variation in morphology affects animal performance (and ultimately fitness) is key to understanding the complete process of evolutionary adaptation. Long tails have evolved many times in arboreal and semi-arboreal rodents; in deer mice, long tails have evolved repeatedly in populations occupying forested habit even within a single species (Peromyscus maniculatus). Here we use a combination of functional modeling, laboratory studies, and museum records to test hypotheses about the function of tail-length variation in deer mice. First, we use computational models, informed by museum records documenting natural variation in tail length, to test whether differences in tail morphology between forest and prairie subspecies can influence performance in behavioral contexts relevant for tail use. We find that the deer mouse tail plays little role in statically adjusting center of mass or in correcting body pitch and yaw, but rather it can affect body roll during arboreal locomotion. In this context, we find that even intraspecific tail-length variation could result in substantial differences in how much body rotation results from equivalent tail motions (i.e., tail effectiveness), but the relationship between commonly-used metrics of tail-length variation and effectiveness is non-linear. We further test whether caudal vertebra length, number, and shape are associated with differences in how much the tail can bend to curve around narrow substrates (i.e., tail curvature) and find that, as predicted, the shape of the caudal vertebrae is associated with intervertebral bending angle across taxa. However, although forest and prairie mice typically differ in both the length and number of caudal vertebrae, we do not find evidence that this pattern is the result of a functional trade-off related to tail curvature. Together, these results highlight how even simple models can both generate and exclude hypotheses about the functional consequences of trait variation for organismal-level performance.

scholarly journals Loss of Genetic Diversity with Captive Breeding and Re-Introduction: A Case Study on Pateke/Brown Teal (Anas chlorotis)

2021 ◽  
Author(s):  
◽  
Gemma Bowker-Wright
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Captive Breeding ◽  
Barrier Island ◽  
Breeding Population ◽  
Island Population ◽  
Wildlife Sanctuary ◽  
Management Options ◽  
Introduced Populations ◽  
Loss Of Genetic Diversity

<p>Pateke/brown teal (Anas chlorotis) have experienced a severe population crash leaving only two remnant wild populations (at Great Barrier Island and Mimiwhangata, Northland). Recovery attempts over the last 35 years have focused on an intensive captive breeding programme which breeds pateke, sourced almost exclusively from Great Barrier Island, for release to establish re-introduced populations in areas occupied in the past. While this important conservation measure may have increased pateke numbers, it was unclear how much of their genetic diversity was being retained. The goal of this study was to determine current levels of genetic variation in the remnant, captive and re-introduced pateke populations using two types of molecular marker, mitochondrial DNA (mtDNA) and microsatellite DNA. Feathers were collected from pateke at Great Barrier Island, Mimiwhangata, the captive breeding population and four re-introduced populations (at Moehau, Karori Wildlife Sanctuary, Tiritiri Matangi Island and Mana Island). DNA was extracted from the base of the feathers, the mitochondrial DNA control region was sequenced, and DNA microsatellite markers were used to genotype individuals. The Great Barrier Island population was found to have only two haplotypes, one in very high abundance which may indicate that historically this population was very small. The captive breeding population and all four re-introduced populations were found to contain only the abundant Great Barrier Island haplotype as the vast majority of captive founders were sourced from this location. In contrast, the Mimiwhangata population contained genetic diversity and 11 haplotypes were found, including the Great Barrier Island haplotype which may have been introduced by captive-bred releases which occurred until the early 1990s. From the microsatellite results, a loss of genetic diversity (measured as average alleles per locus, heterozygosity and allelic richness) was found from Great Barrier Island to captivity and from captivity to re-introduction. Overall genetic diversity within the re-introduced populations (particularly the smaller re-introduced populations at Karori Wildlife Sanctuary, Tiritiri Matangi Island and Mana Island) was much reduced compared with the remnant populations, most probably as a result of small release numbers and small population size. Such loss of genetic diversity could render the re-introduced populations more susceptible to inbreeding depression in the future. Suggested future genetic management options are included which aim for a broader representation of genetic diversity in the pateke captive breeding and release programme.</p>

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