Molecular systematic relationships and evidence for a recent origin of the thermal spring endemic snails Physella johnsoni and Physella wrighti (Pulmonata: Physidae)

2001 ◽  
Vol 79 (11) ◽  
pp. 1941-1950 ◽  
Author(s):  
Elpidio A Remigio ◽  
Dwayne AW Lepitzki ◽  
Jacqueline S Lee ◽  
Paul DN Hebert

The evolutionary origins of Physella johnsoni and Physella wrighti, freshwater snails endemic to thermal springs in Alberta and British Columbia, were examined by sequence comparisons of mitochondrial genes coding for segments of the large subunit ribosomal RNA (16S) and cytochrome c oxidase I (COI) with those in the closely allied species Physella gyrina. Phylogenetic reconstructions based on combined and separate analyses of the datasets identified P. wrighti as the sister taxon to a P. johnsoni + P. gyrina clade. For both gene regions there was little or no sequence variation among conspecific individuals, but a number of diagnostic differences existed between each of the species pairs. Tree topologies and estimates of sequence divergence indicate that the divergence events which separated the three species occurred rather recently and at relatively brief intervals, and it is likely that P. wrighti is the source of the ancestral population from which P. johnsoni and P. gyrina were derived. Our findings support the recognition of P. johnsoni and P. wrighti as endemic species. The populations of P. johnsoni probably separated from P. gyrina about 10 000 years ago, when glaciers retreated from the Banff area and prehistoric lake levels dropped. The limited molecular divergence between P. johnsoni and P. gyrina argues against their current placement in different subgenera within the genus Physella.

1994 ◽  
Vol 14 (6) ◽  
pp. 4203-4215
Author(s):  
R Sweeney ◽  
L Chen ◽  
M C Yao

Regions extremely variable in size and sequence occur at conserved locations in eukaryotic rRNAs. The functional importance of one such region was determined by gene reconstruction and replacement in Tetrahymena thermophila. Deletion of the D8 region of the large-subunit rRNA inactivates T. thermophila rRNA genes (rDNA): transformants containing only this type of rDNA are unable to grow. Replacement with an unrelated sequence of similar size or a variable region from a different position in the rRNA also inactivated the rDNA. Mutant rRNAs resulting from such constructs were present only in precursor forms, suggesting that these rRNAs are deficient in either processing or stabilization of the mature form. Replacement with D8 regions from three other organisms restored function, even though the sequences are very different. Thus, these D8 regions share an essential functional feature that is not reflected in their primary sequences. Similar tertiary structures may be the quality these sequences share that allows them to function interchangeably.


The Condor ◽  
2007 ◽  
Vol 109 (4) ◽  
pp. 954-962
Author(s):  
Robert C. Fleischer ◽  
Beth Slikas ◽  
Jon Beadell ◽  
Colm Atkins ◽  
Carl E. McINTOSH ◽  
...  

Abstract The Millerbird (Acrocephalus familiaris) is an endemic Northwestern Hawaiian Islands reed warbler that existed until about 1923 on Laysan Island (A. f. familiaris) and currently occurs in a small population on Nihoa Island (A. f. kingi). The two populations are described as separate subspecies or species on the basis of size and plumage differences. We assessed genetic variation in blood samples from 15 individuals in the modern Nihoa population using approximately 3000 base pairs (bp) of mitochondrial DNA (mtDNA) sequence and 14 microsatellite loci. We also obtained up to 1028 bp of mtDNA sequence from the fragmented DNA of museum specimens of three birds collected on Nihoa in 1923 and five birds collected on Laysan in 1902 and 1911 (ancient samples). Genetic variation in both marker types was extremely low in the modern Nihoa population (nucleotide diversity [π]  =  0.00005 for mtDNA sequences; observed heterozygosity was 7.2% for the microsatellite loci). In contrast, we found three mtDNA haplotypes among the five Laysan individuals (π  =  0.0023), indicating substantially greater genetic variation. The Nihoa and Laysan taxa differed by 1.7% uncorrected mtDNA sequence divergence, a magnitude that would support designation at the subspecies, and perhaps species, level relative to other closely related Acrocephalus species pairs. However, in light of strong ecological similarity between the two taxa, and a need to have additional populations to prevent extinction from stochastic effects and catastrophes, we believe these genetic differences should not deter a potential translocation of individuals from Nihoa to Laysan.


2009 ◽  
Vol 57 (4) ◽  
pp. 167 ◽  
Author(s):  
Gavin Huttley

Did the mammal radiation arise through initial divergence of prototherians from a common ancestor of metatherians and eutherians, the Theria hypothesis, or of eutherians from a common ancestor of metatherians and prototherians, the Marsupionta hypothesis? Molecular phylogenetic analyses of point substitutions applied to this problem have been contradictory – mtDNA-encoded sequences supported Marsupionta, nuclear-encoded sequences and RY (purine–pyrimidine)-recoded mtDNA supported Theria. The consistency property of maximum likelihood guarantees convergence on the true tree only with longer alignments. Results from analyses of genome datasets should therefore be impervious to choice of outgroup. We assessed whether important hypotheses concerning mammal evolution, including Theria/Marsupionta and the branching order of rodents, carnivorans and primates, are resolved by phylogenetic analyses using ~2.3 megabases of protein-coding sequence from genome projects. In each case, only two tree topologies were being compared and thus inconsistency in resolved topologies can only derive from flawed models of sequence divergence. The results from all substitution models strongly supported Theria. For the eutherian lineages, all models were sensitive to the outgroup. We argue that phylogenetic inference from point substitutions will remain unreliable until substitution models that better match biological mechanisms of sequence divergence have been developed.


2019 ◽  
Vol 116 (4) ◽  
pp. 1331-1336 ◽  
Author(s):  
Rebecca L. Young ◽  
Michael H. Ferkin ◽  
Nina F. Ockendon-Powell ◽  
Veronica N. Orr ◽  
Steven M. Phelps ◽  
...  

Social monogamy, typically characterized by the formation of a pair bond, increased territorial defense, and often biparental care, has independently evolved multiple times in animals. Despite the independent evolutionary origins of monogamous mating systems, several homologous brain regions and neuropeptides and their receptors have been shown to play a conserved role in regulating social affiliation and parental care, but little is known about the neuromolecular mechanisms underlying monogamy on a genomic scale. Here, we compare neural transcriptomes of reproductive males in monogamous and nonmonogamous species pairs ofPeromyscusmice,Microtusvoles, parid songbirds, dendrobatid frogs, andXenotilapiaspecies of cichlid fishes. We find that, while evolutionary divergence time between species or clades did not explain gene expression similarity, characteristics of the mating system correlated with neural gene expression patterns, and neural gene expression varied concordantly across vertebrates when species transition to monogamy. Our study provides evidence of a universal transcriptomic mechanism underlying the evolution of monogamy in vertebrates.


1991 ◽  
Vol 69 (6) ◽  
pp. 1577-1584 ◽  
Author(s):  
Truls Moum ◽  
Kjell Einar Erikstad ◽  
Eirik Bjørklid

Alcid species (auks) breed in a restricted number of large seabird colonies and are considered highly philopatric. Mitochondrial DNA (mtDNA) of Common Murres, Uria aalge, from four Norwegian colonies was investigated by restriction analysis to assess the amount of geographic population structure and genetic variability in a colonial breeder. Eleven restriction endonucleases revealed 13 mtDNA genotypes among 51 individuals. Genetic diversity was low, with an average of 0.11% (range 0.0–0.55%) sequence divergence between all individuals. Population divergence within the surveyed region seems to be minimal, demonstrated by the low levels of sequence divergence between colonies and lack of spatial structuring of genotypes. Such results can be expected if birds originated from a smaller ancestral population during glaciation, and may have been reinforced by repeated population bottlenecks and considerable gene flow between colonies.


2006 ◽  
Vol 56 (5) ◽  
pp. 1147-1151 ◽  
Author(s):  
Carla C. C. Ruivo ◽  
Marc-André Lachance ◽  
Carlos A. Rosa ◽  
Maurício Bacci ◽  
Fernando C. Pagnocca

Strains belonging to three novel yeast species, Candida heliconiae (four isolates), Candida picinguabensis (three isolates) and Candida saopaulonensis (two isolates), were recovered in the year 2000 from water of flower bracts of Heliconia velloziana L. Emigd. (Heliconiaceae) found in a forest ecosystem site in an Atlantic rainforest of south-eastern Brazil. C. picinguabensis and C. saopaulonensis were nearly identical in morphology and physiology, but sequence divergence in the D1/D2 domain of the large-subunit rDNA indicated that they should be regarded as different species. They belong to the Metschnikowiaceae clade. C. heliconiae had affinities to Pichia mexicana and related species, but was genetically isolated from all currently accepted species in that group. The type strains are C. heliconiae UNESP 00-91C1T (=CBS 10000T=NRRL Y-27813T), C. picinguabensis UNESP 00-89T (=CBS 9999T=NRRL Y-27814T) and C. saopaulonensis UNESP 00-99T (=CBS 10001T=NRRL Y-27815T).


Genome ◽  
1992 ◽  
Vol 35 (6) ◽  
pp. 1037-1044 ◽  
Author(s):  
Cort S. Madsen ◽  
Kevin P. McHugh ◽  
Siwo R. de Kloet

We have investigated the evolution of a 190 base pair tandemly repeated DNA sequence (RBMII) in 27 different species of waterfowl. In this paper we show that the RBMII sequence is present in many species belonging to 7 of the 11 Anatid tribes. Inter- and intra-tribal differences in repeat presence indicate that, although the RBMII sequence has been maintained among widely divergent species, it is rapidly evolving. Restriction enzyme analyses suggest very different hierarchical repeat organizations among different species. DNA sequence comparisons of 32 cloned monomer units from five different species revealed what appears to be a nonrandom distribution of sequence divergence, as well as large differences (up to 25-fold) in intraspecific sequence variation between relatively closely related species.Key words: repeated DNA, Anatidae, sequence variation.


2012 ◽  
Vol 62 (Pt_11) ◽  
pp. 2805-2809 ◽  
Author(s):  
Feng-Li Hui ◽  
Qiu-Hong Niu ◽  
Tao Ke ◽  
Zheng Liu

A novel yeast species is described based on three strains from the gut of wood-boring larvae collected in a tree trunk of Ficus carica cultivated in parks near Nanyang, central China. Phylogenetic analysis based on sequences of the D1/D2 domains of the large subunit rRNA gene showed that these strains occurred in a separate clade that was genetically distinct from all known ascomycetous yeasts. In terms of pairwise sequence divergence, the novel strains differed by 15.3 % divergence from the type strain of Pichia terricola, and by 15.8 % divergence from the type strains of Pichia exigua and Candida rugopelliculosa in the D1/D2 domains. All three are ascomycetous yeasts in the Pichia clade. Unlike P. terricola, P. exigua and C. rugopelliculosa, the novel isolates did not ferment glucose. The name Candida ficus sp. nov. is proposed to accommodate these highly divergent organisms, with STN-8T ( = CICC 1980T = CBS 12638T) as the type strain.


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