Acid Soluble Nucleotides and Ribonucleic Acids from Germinating Jack Pine Seeds

1972 ◽  
Vol 2 (3) ◽  
pp. 206-216 ◽  
Author(s):  
D. J. Durzan ◽  
J. Pitel ◽  
P. K. Ramaiah

In germinating pine seedlings, acid soluble nucleotides, initially rich in AMP, accumulated, and were increasingly dominated by ATP. By 7 days, when hypocotyls were green but still dependent on the female gametophyte, the percentage of adenine nucleotides declined as other nucleotides increased. At 11 days, when gametophytic reserves were depleted, and seedlings were exposed to 32P- phosphoric acid, adenine nucleotides accounted for over 70% of the recovery of 32P from the nucleotide fraction.In seedlings, total RNA per unit weight increased to the 6th day, then levelled off. Comparison of electrophoretic mobilities of pine RNA on 2.5% polyacrylamide gels with ribosomal RNA from other sources revealed the following main types based on estimated molecular weights: 1.3, 1.1, 0.7, and 0.56 × 106 daltons, corresponding to 25S, 23S, 18S, and 16S, respectively. On 10% polyacrylamide gels, the mobility of low molecular weight pine RNA was similar to that of yeast tRNA. The 1.3 and 0.7 × 106 dalton fractions, representing ribosomal RNA, contributed 60–90% of the total RNA. During germination, the ratio of 1.3 to 0.7 × 106 RNA dropped from 2.4 to 1.7 and reciprocated the pattern for water content of the seedling.32P was incorporated mainly into the 25S and 18S RNA by 11-day-old seedlings, indicating that synthesis of ribosomes was a major event in growing seedlings. During germination, the synthesis of RNA corresponded to an increase of total RNA detected cytochemically and to an increase of new cytoplasm with more ribosomes, as observed previously with hypocotyl cells by electron microscopic procedures.

1974 ◽  
Vol 52 (6) ◽  
pp. 1309-1317 ◽  
Author(s):  
W. K. Kim ◽  
R. Rohringer

Uredospores of wheat stem rust (Puccinia graminis Pers. f. sp. tritici Eriks. & E. Henn.) were deposited onto Millipore membranes and allowed to germinate. Those remaining continuously at 20° formed germ tubes only (non-differentiated), but those exposed to 30° for 90 min after the first 2 h of germination developed infection structures corresponding to appressoria and substomatal vesicles (differentiated).Nucleic acids were extracted with a phenol method from resting uredospores and from differentiated and non-differentiated sporelings. The amount of extractable RNA decreased as germination progressed, but no RNA was detected in the germination medium. The decrease in extractable RNA (up to 40%) occurred in both differentiated and non-differentiated sporelings.Acrylamide gel electrophoresis was used to separate RNA species and to determine their approximate molecular weights (in daltons): sporelings contained 25-S (1.65 × 106) and 18-S (0.80 × 106) ribosomal RNA (rRNA), 5-S (3.6 × 104) rRNA, and 4.5-S (2.4 × 104) transfer RNA (tRNA). Radioactive uridine, fed to sporelings, was incorporated mostly into 5-S rRNA and (or) tRNA.Acrylamide gel electrophoresis and sucrose density gradient centrifugation revealed that differentiated sporelings contained a type of RNA that was not detected in non-differentiated sporelings. It was heterogeneous and migrated in the 16-S to 5-S interval on polyacrylamide gels. Some of the RNA present in this fraction may have been preformed in resting spores and released from more complex material during the process of differentiation.


1968 ◽  
Vol 107 (6) ◽  
pp. 851-859 ◽  
Author(s):  
M. L. Fenwick

It has been reported that the RNA of several bacteriophages and that of the larger ribosomal sub-units of mammalian cells sediment faster in the presence of 0·1m-sodium chloride than is expected from their estimated molecular weights. The effect of blocking the hydrogen-bonding amino groups of these and other types of RNA was studied. The RNA of phage R17 no longer sedimented anomalously fast after treatment with formaldehyde. In contrast, the larger ribosomal RNA of HeLa cells appeared more aberrant than before, sedimenting faster than tobacco-mosaic-virus RNA (mol.wt. 2×106) in the presence of formaldehyde. The rapidly labelled nuclear 45s RNA of HeLa cells still sedimented faster than the larger ribosomal RNA after reaction with formaldehyde, showing no evidence of disaggregation. It is suggested that both the large ribosomal RNA and the 45s RNA of HeLa cells may have a non-linear structure.


2015 ◽  
Vol 48 (4) ◽  
pp. 501-510 ◽  
Author(s):  
Stanisław Weidner ◽  
Krzysztof Kulka

The work present quantitative changes and synthesis od: RNA fractions in wheat grain and endosperm during development and ripening. It was found that share of rRNA in total RNA decreases during development both, in the endosperm and in grain. Rapid drop of rRNA content in total RNA takes place in the endosperm since 31st day after blooming, and in grain - since 45th day after blooming. Absolute amount of rRNA, as calculated per 100 grains or endosperms, increases in the first half of grain formation period, and then decreases till the end of development. As a result of degradation of ribosomal RNA in endosperm, low-molecule fraction – 4 S, significantly increased at final stage of development. Decrease of rRNA fraction at final stage of development is not accompanied by an increase of absolute amount of 4 S RNA fraction. Incorporation of 3H-,uriidine into grain and endosperm RNA is highest at the begining of development. Further on it gradually decreases till the end of development. Synthesis of RNA in grain takes place throughout the whole development. Contrary to this, no incorporation of precursor into rRNA was noted during waxy and full ripeness of wheat grain.


Author(s):  
Henry S. Slayter

Electron microscopic methods have been applied increasingly during the past fifteen years, to problems in structural molecular biology. Used in conjunction with physical chemical methods and/or Fourier methods of analysis, they constitute powerful tools for determining sizes, shapes and modes of aggregation of biopolymers with molecular weights greater than 50, 000. However, the application of the e.m. to the determination of very fine structure approaching the limit of instrumental resolving power in biological systems has not been productive, due to various difficulties such as the destructive effects of dehydration, damage to the specimen by the electron beam, and lack of adequate and specific contrast. One of the most satisfactory methods for contrasting individual macromolecules involves the deposition of heavy metal vapor upon the specimen. We have investigated this process, and present here what we believe to be the more important considerations for optimizing it. Results of the application of these methods to several biological systems including muscle proteins, fibrinogen, ribosomes and chromatin will be discussed.


Author(s):  
J. L. Stites

A Nocardia sp.was found during an initial transmission electron microscopic (TEM) examination to have unusual intracellular bodies (ICB's) which do not appear to have been described previously in the literature. Most intracellular structures within bacteria have been classified as storage granules, a product of membrane invagination (i.e. mesosomes), or vacuoles. In bacteria there are no known intracellular membrane-bound organelles, and all internal membranes are invaginations of the unit membrane. Several microscopic-level examinations of the Nocardia sp. ICB's were initiated in order to determine their overall structure, classification, and internal constitution.Different TEM staining procedures were performed to determine possible molecular components of the ICB. In all of the staining protocols the ICB's showed a lack of electron density similar to the cell wall. Because the ICB's showed no affinity to any stain, it appeared they do not have strong positive charge (phosphotungstic acid), are not protein rich (en bloc uranyl acetate), lack glycogen and are not phosphate or sulphur rich (lead citrate), nor do they contain lipids or ribonucleic acids (osmium tetroxide).


1981 ◽  
Vol 45 (01) ◽  
pp. 090-094 ◽  
Author(s):  
Katsuo Sueishi ◽  
Shigeru Nanno ◽  
Kenzo Tanaka

SummaryFibrinogen degradation products were investigated for leukocyte chemotactic activity and for enhancement of vascular permeability. Both activities increased progressively with plasmin digestion of fibrinogen. Active fragments were partially purified from 24 hr-plasmin digests. Molecular weights of the permeability increasing and chemotactic activity fractions were 25,000-15,000 and 25,000 respectively. Both fractions had much higher activities than the fragment X, Y, D or E. Electron microscopic observation of the small blood vessels in rabbit skin correlated increased permeability with the formation of characteristic gaps between adjoining endothelial cells and their contraction.These findings suggest that lower molecular weight degradation products of fibrinogen may be influential in contributing to granulocytic infiltration and enhanced permeability in lesions characterized by deposits of fibrin and/or fibrinogen.


2012 ◽  
Vol 44 (12) ◽  
pp. 651-656 ◽  
Author(s):  
S. Ellefsen ◽  
M. Bliksøen ◽  
A. Rutkovskiy ◽  
I. B. Johansen ◽  
M.-L. Kaljusto ◽  
...  

In studies of gene expression in acute ischemic heart tissue, internal reference genes need to show stable expression per-unit-living tissue to hinder dead cells from biasing real-time RT-PCR data. Until now, this important issue has not been appropriately investigated. We hypothesized that the expression of seven internal reference genes would show stable per-unit-living tissue expression in Langendorff-perfused rat hearts subjected to ischemia-reperfusion. This was found for cyclophilin A, GAPDH, RPL-32, and PolR2A mRNA, with GAPDH showing the highest degree of stability ( R = 0.11), suggesting unchanged rates of mRNA transcription in live cells and complete degradation of mRNA from dead cells. The infarct size-dependent degradation of GAPDH was further supported by a close correlation between changes in GAPDH mRNA and changes in RNA quality measured as RNA integrity number (R = 0.90, P < 0.05). In contrast, β-actin and 18S rRNA showed stable expression per-unit-weight tissue and a positive correlation with infarct size (R = 0.61 and R = 0.77, P < 0.05 for both analyses). The amount of total RNA extracted per-unit-weight tissue did not differ between groups despite wide variation in infarct size (7.1–50.1%). When β-actin expression was assessed using four different normalization strategies, GAPDH and geNorm provided appropriate per-unit-living expression, while 18S and total RNA resulted in marked underestimations. In studies of ischemic tissues, we recommend using geometric averaging of carefully selected reference genes for normalization of real-time RT-PCR data. A marked shift in the mRNA/rRNA ratio renders rRNA as useless for normalization purposes.


1993 ◽  
Vol 104 (4) ◽  
pp. 1199-1205 ◽  
Author(s):  
P. Hozak ◽  
C. Schofer ◽  
J. Sylvester ◽  
F. Wachtler

The nature and localization of DNA contained in the fibrillar centres and the dense fibrillar component (the fibrillar complex) in the nucleoli, was studied in human LEP cells, Sertoli cells, spermatogonia A and in mitotic chromosomes of stimulated lymphocytes. A novel procedure for isolating the intact fibrillar complex from LEP cells was used; the complex contains DNA that hybridizes to secondary constrictions of mitotic chromosomes and to 28 S rDNA sequences, on Southern blots. Electron microscopic DNA-DNA in situ hybridization was performed, with (a) a probe prepared from DNA extracted from the fibrillar complex of LEP cells, (b) a probe for human total genomic DNA, and (c) a probe for the transcribed part of human rDNA. On the basis of the results obtained we conclude that the ribosomal RNA genes in human Sertoli cells and spermatogonia A are predominantly associated with the dense fibrillar component, including the border region between fibrillar centres and the dense fibrillar component. The ribosomal RNA genes are the main, if not exclusive, DNA type present in the fibrillar complex in the studied cell types.


1977 ◽  
Vol 25 (1) ◽  
pp. 95-102
Author(s):  
A.E. Lykkesfeldt ◽  
H.A. Andersen

On a chemically defined growth medium the degree of substitution of thymidine with 5-bromodeoxyuridine (BUdR) in DNA of Tetrahymena pyriformis was controlled by the concentration of tetrahydrofiolic acid, BUdR and thymidine in the medium. A correlation between the degree of BUdR substitution in DNA and the reduction in rate of total RNA synthesis has been established. It was found that the reduction of total RNA synthesis results from inhibition of transcription of all RNA species which have been measured. However, independent of the degree of BUdR substitution in DNA, a preferential inhibition of the synthesis of 25s and 17s ribosomal RNA was found. It is concluded that the various genes may respond differently to BUdR substitution with respect to transcription.


1975 ◽  
Vol 21 (12) ◽  
pp. 2019-2027
Author(s):  
M. Laguerre ◽  
R. Turcotte

The tuberculin activity of protoplasmic extracts isolated from living BCG was purified successively by gel filtration on Sephadex G-100 and G-75, and by electrophoresis on 7.5% and on gradient (6–18%) polyacrylamide gels. The tuberculin-active fractions, as determined in BCG-sensitized guinea pigs, were used as the starting material for each of the following fractionation steps.The physicochemical properties and the antigenic activity of the biologically active fractions have shown that a single component, or only a few ones with similar properties, possessed high tuberculin activity. These active components were proteins having relatively high molecular weights (about 72 000) and could behave as antigens.


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