Culturable bacterial populations associated with ectomycorrhizae of Norway spruce stands with different degrees of decline in the Czech Republic

2010 ◽  
Vol 56 (1) ◽  
pp. 52-64 ◽  
Author(s):  
Lorena Avidano ◽  
Maurizio Rinaldi ◽  
Roberto Gindro ◽  
Pavel Cudlín ◽  
Maria Giovanna Martinotti ◽  
...  
Keyword(s):  
Norway Spruce ◽  
Burkholderia Cepacia ◽  
Forest Decline ◽  
Bacterial Species ◽  
Principal Component ◽  
Atmospheric Pollutants ◽  
Culturable Bacteria ◽  
Bacterial Populations ◽  
Spruce Stands ◽  
Associated Species

The aim of this study was to determine which species of culturable bacteria are associated with ectomycorrhizae (ECM) of Norway spruce (Picea abies (L.) Karst) in the Sudety Mountains, exposed for years to atmospheric pollutants, acid rain, and climatic stress, and to identify particular species that have adapted to those conditions. Biolog identification was performed on bacterial species from ECM of adult spruce trees and seedlings of stands with low, intermediate, and high forest decline. Bacterial diversity in ECM associated with adult spruce trees, seedlings, and seedlings grown on monoliths was calculated; although the expected values appeared to vary widely, no significant differences among sites were observed. Dendrograms based on the identified bacterial species showed that stands with low forest decline clustered separately from the others. Principal component analysis of the normalized data for ECM-associated species showed a clear separation between stands with high forest decline and stands with low forest decline for seedlings and a less evident separation for adult spruce trees. In conclusion, shifts in ECM-associated culturable bacterial populations seem to be associated with forest decline in Norway spruce stands. Some bacterial species were preferentially associated with mycorrhizal roots depending on the degree of forest decline; this was more evident in seedlings where the species Burkholderia cepacia and Pseudomonas fluorescens were associated with, respectively, ECM of the most damaged stands and those with low forest decline.

scholarly journals Screening of bacterial populations in crop rotations with different proportion of cereals

2014 ◽  
Vol 60 (1) ◽  
pp. 31-38 ◽  
Author(s):  
Katarína Ondreičková ◽  
Mária Babulicová ◽  
Daniel Mihálik ◽  
Marcela Gubišová ◽  
Jozef Gubiš
Keyword(s):  
Bacterial Communities ◽  
Fragment Length Polymorphism ◽  
Bacterial Species ◽  
Principal Component ◽  
Crop Rotations ◽  
Community Diversity ◽  
Bacterial Populations ◽  
Organic Fertiliser ◽  
Two Samples ◽  
Significant Difference

Abstract Terminal restriction fragment length polymorphism was used to determine the bacterial community diversity in crop rotations with different proportion of cereals (40%, 60% and 80%) and various fertilisation treatments (F1 - mineral fertiliser amendment + the application of organic fertiliser Veget® and F2 - mineral fertilisation) sampled on two dates (July and October 2012). No statistically significant differences in the number of terminal restriction fragments were detected by Fisher´s least significant difference between two types of fertilisation or among samples with different proportion of cereals. In contrast, statistically significant differences were detected between samples collected in July and October, when in October there was a 43.5% reduction in the number of bacterial species in comparison with July. Principal component analysis as well as cluster analysis showed that a higher similarity in composition of bacterial communities was present among all soil samples collected in July and two samples collected in October. Other samples collected in October were separated from each other. The results of this study demonstrated that bacteria abundance and community composition were not affected by the proportion of cereals and fertiliser used.

scholarly journals Spatio-temporal patterns of the Norway spruce decline in the Beskid Śląski and Żywiecki (Western Carpathians) in southern Poland

2008 ◽  
Vol 53 (Special Issue) ◽  
pp. 38-44 ◽  
Author(s):  
W. Grodzki
Keyword(s):  
Norway Spruce ◽  
High Temperatures ◽  
Bark Beetle ◽  
Forest Decline ◽  
Wind Damage ◽  
Forest Protection ◽  
Southern Poland ◽  
Spruce Stands ◽  
Spatio Temporal ◽  
Winter Time

A dramatic forest decline due to the bark beetle outbreak, which occurs in the Norway spruce stands in the Western Beskidy (southern Poland) since 2003, was started after severe physiological drought during winter time. An analysis describing some spatio-temporal characteristics of this process, with special regard to the patterns of bark beetle occurrence related to root fungal diseases, is presented. In 2003 the bark beetle occurrence level assessed as high and catastrophic was recorded on 40% of the area, while in 2006 – on 59%. The range of <I>Armillaria</I> root disease and bark beetle outbreak increased towards higher altitudes, including the zone above 1,000 m a.s.l. The wind damage in 2004 and 2007, and high temperatures in the summer 2006, further stimulated the increase in bark beetle populations level. Some conclusions on possible development of the outbreak and recommendations concerning related needs in forest protection, are given.

scholarly journals Forest decline has not reduced genetic diversity of naturally regenerated Norway spruce from the Beskids, Poland

2015 ◽  
Vol 64 (1-6) ◽  
pp. 270-278 ◽  
Author(s):  
Elżbieta Chomicz-Zegar ◽  
J. A. Nowakowska ◽  
A. Tereba
Keyword(s):  
Genetic Diversity ◽  
Genetic Variation ◽  
Norway Spruce ◽  
Forest Decline ◽  
Gene Diversity ◽  
Young Generation ◽  
Primeval Forest ◽  
Initial Stage ◽  
Spruce Stands ◽  
High Level

AbstractNorway spruce forests decline in the Beskids raises concerns about reduction of genetic variation in a next generation of forest. We aim to determine whether the genetic diversity in declining spruce stands was successfully transmitted to its self-seeded progeny. Using three nuclear microsatellite markers, we carried out the genetic assessment of naturally regenerated progeny and compered them with their maternal stands at an initial stage of decline. We investigated three spruce stands from the Śląski and Żywiecki Beskid and one primeval forest from the Tatras, as a reference. We noticed a high level of gene diversity, allelic richness and an effective number of alleles in progeny of all stands, without differences between declining stands from the Beskids and the primeval forest. The gene diversity was similar in maternal trees and their offspring. Higher gene diversity and generally higher number of alleles were noticed in young generation of stands. Genetic identity between generations was high in analyzed seed stands and the highest in the primeval forest. The results we presented indicate no significant effect of drastic reduction in the population size due to the forest decline on the level of genetic variation in self-seeded progeny of Norway spruce from the Beskids.

scholarly journals Isolation and Identification of taxonomically diverse bacterial endophytes from citrus in Punjab Pakistan

2022 ◽  
Author(s):  
Sagheer Atta
Keyword(s):  
Burkholderia Cepacia ◽  
Biological Control Agent ◽  
Bacterial Species ◽  
Pcr Amplification ◽  
Control Agent ◽  
Total Production ◽  
Font Size ◽  
Isolation And Identification ◽  
Bacterial Populations ◽  
Gamma Proteobacteria

<pre style="margin: 0in 0in 0.0001pt; font-size: 10pt; font-family: "Courier New"; caret-color: rgb(0, 0, 0); color: rgb(0, 0, 0); text-align: justify; line-height: 26.666664123535156px;"> <span style="font-size: 12pt; line-height: 32px; font-family: "Times New Roman", serif;">Citrus is an economically important fruit crop grown in all provinces of Pakistan, while Punjab accounting for 95 percent of total production due to its favorable climate for citrus production. Commercially grown varieties in Pakistan include sweet oranges, grapefruits, Mandarine, Lime, and lemon. The goal of this research was to see how diverse the cultivable bacterial populations are found in citrus cultivars. Out of 90 isolated cultures, 37 endophytic bacterial species and 15 </span><span style="font-size: 12pt; line-height: 32px; font-family: "Times New Roman", serif;">different genera of bacteria were characterized</span><span style="font-size: 12pt; line-height: 32px; font-family: "Times New Roman", serif;"> based on morphological, biochemical, and molecular methods from citrus leaves. All the isolated bacteria were subjected to PCR amplification through 16S rDNA followed by sequencing. </span><span style="font-size: 12pt; line-height: 32px; font-family: "Times New Roman", serif;">RDP base classification revealed that class Bacilli has the largest percentage of isolates, whereas class Alpha, Beta, and Gamma Proteobacteria have the lowest percentage among all genotypes used. According to the findings, the phylum Firmicutes contains a common genus (Brevibacterium, 1%; Enterococcus, 6%; Staphylococcus, 7% and Bacillus, 60%). Alpha (Rhizobium) beta (Burkholderia cepacia; Comamonas terigena) gamma Proteobacteria (Enterobacter hermachei (1%), Klebsiella pneumoniae (1%), Proteus mirabilis (8%), Pseudomonas aeruginosa (5%), Psychrobacter pulmonis and Yersinia molalretti (1%) respectively. </span><span style="font-size: 12pt; line-height: 32px; font-family: "Times New Roman", serif;">These results revealed that cultivars of the plants might contribute to the structure and endophytic bacterial communities associated with citrus. Endophytes extracted from leaf samples of different citrus cultivars in Pakistan are reported for the first time. The idea of employing endophytes bacteria to produce enzymes stimulate plant growth, and its purpose as a biological control agent will be investigated in the future.</span><span style="font-size: 12pt; line-height: 32px; font-family: "Times New Roman", serif;"><o:p></o:p></span></pre>

scholarly journals Imitated Whole Tree Harvesting Show Negligible Effect on Economic Value of Spruce Stands

Forests ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 841
Author(s):  
Iveta Desaine ◽  
Annija Kārkliņa ◽  
Roberts Matisons ◽  
Anna Pastare ◽  
Andis Adamovičs ◽  
...  
Keyword(s):  
Norway Spruce ◽  
Economic Value ◽  
Forest Types ◽  
Spruce Stands ◽  
The Difference ◽  
Growing Conditions ◽  
Whole Tree Harvesting ◽  
Whole Tree ◽  
Tree Harvesting

The increased removal of forest-derived biomass with whole-tree harvesting (WTH) has raised concerns about the long-term productivity and sustainability of forest ecosystems. If true, this effect needs to be factored in the assessment of long-term feasibility to implement such a drastic forest management measure. Therefore, the economic performance of five experimental plantations in three different forest types, where in 1971 simulated WTH event occurred, was compared with pure, planted and conventionally managed (CH) Norway spruce stands of similar age and growing conditions. Potential incomes of CH and WTH stands were based on timber prices for period 2014–2020. However, regarding the economics of root and stump biomass utilization, they were not included in the estimates. In any given price level, the difference of internal rate of return between the forest types and selected managements were from 2.5% to 6.2%. Therefore, Norway spruce stands demonstrate good potential of independence regardless of stump removal at the previous rotation.

scholarly journals A Novel Approach to Evaluate the Effect of Neighboring Trees and the Orientation of Tree Social Area on Stem Radial Increment of Norway Spruce Trees

Forests ◽  
2021 ◽  
Vol 12 (2) ◽  
pp. 163
Author(s):  
Jan Světlík ◽  
Jan Krejza ◽  
Pavel Bednář
Keyword(s):  
Norway Spruce ◽  
Tree Growth ◽  
Growth Models ◽  
Explanatory Power ◽  
Radial Increment ◽  
Important Indicator ◽  
The Czech Republic ◽  
Novel Approach ◽  
Spruce Stands ◽  
Social Area

Tree growth depends on many factors such as microsite conditions, vitality, and variations in climate and genetics. It is generally accepted that higher growth indicates both an economic benefit and better vitality of any tree. Here we use a modified approach of evaluating tree social area to study mutual tree competition based on the orientation and shape of trees social area. The investigation was performed in nine Norway spruce stands in the Czech Republic. The objective of this study performed from 2008 to 2012 was to quantify relative tree radial increments with respect to the lowest and highest competition found in specific sectors of tree social area (AS). Specific groups of trees (tree classes) were evaluated according to their classes (dominant, co-dominant and sub-dominant) and their composition status in ninety-degree sectors of AS using established classifying rules. The results showed that a spatially-available area (AA) is an inappropriate parameter for predicting tree growth, whereas AS provided robust explanatory power to predict relative radial growth. Tree size was observed as an important indicator of relative radial increments. A significantly positive correlation was found for a radial increment of sub-dominant trees with the lowest competition from western directions; whereas a negative correlation was observed when the lowest competition was observed from eastern directions. For dominant trees, there was an evident growth reaction only when more than 50% of the AS was oriented towards one of the cardinal points. Individual differences in the orientation of tree AS may be important parameters with regard to competition and its spatial variability within an area surrounding a particular tree and deserve more detailed attention in tree growth models and practice.

scholarly journals Comparison of Microbiological Characteristics and Genetic Diversity between Burkholderia cepacia Complex Isolates from Vascular Access and Other Clinical Infections

2020 ◽  
Vol 9 (1) ◽  
pp. 51
Author(s):  
Min Yi Wong ◽  
Yuan-Hsi Tseng ◽  
Tsung-Yu Huang ◽  
Bor-Shyh Lin ◽  
Chun-Wu Tung ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Vascular Access ◽  
Burkholderia Cepacia ◽  
Bacterial Species ◽  
Diversity Indices ◽  
Burkholderia Cepacia Complex ◽  
Reca Gene ◽  
Clinical Effects ◽  
Environmental Distribution ◽  
Microbiological Characteristics

Burkholderia cepacia complex (BCC) is a group of closely related bacteria with widespread environmental distribution. BCC bacteria are opportunistic pathogens that cause nosocomial infections in patients, especially cystic fibrosis (CF). Multilocus sequence typing (MLST) is used nowadays to differentiate species within the BCC complex. This study collected 41 BCC isolates from vascular access infections (VAIs) and other clinical infections between 2014 and 2020. We preliminarily identified bacterial isolates using standard biochemical procedures and further conducted recA gene sequencing and MLST for species identification. We determined genetic diversity indices using bioinformatics software. We studied 14 isolates retrieved from patients with VAIs and observed that Burkholderia cepacia was the predominant bacterial species, and B. contaminans followed by B. cenocepacia were mainly retrieved from patients with other infections. According to MLST data, we identified that all B. contaminans isolates belonged to ST102, while a wide variety of sequence types (STs) were found in B. cenocepacia isolates. In summary, the high diversity and easy transmission of BCC increase BCC infections, which provides insights into their potential clinical effects in non-CF infections.

scholarly journals Bacteria in the global atmosphere – Part 2: Modeling of emissions and transport between different ecosystems

2009 ◽  
Vol 9 (23) ◽  
pp. 9281-9297 ◽  
Author(s):  
S. M. Burrows ◽  
T. Butler ◽  
P. Jöckel ◽  
H. Tost ◽  
A. Kerkweg ◽  
...  
Keyword(s):  
Seasonal Variation ◽  
Residence Time ◽  
General Circulation ◽  
Bacterial Species ◽  
Circulation Model ◽  
Cloud Condensation Nucleus ◽  
Cloud Formation ◽  
Emission Region ◽  
Culturable Bacteria ◽  
Bacterial Cells

Abstract. Bacteria are constantly being transported through the atmosphere, which may have implications for human health, agriculture, cloud formation, and the dispersal of bacterial species. We simulate the global transport of bacteria, represented as 1 μm and 3 μm diameter spherical solid particle tracers in a general circulation model. We investigate factors influencing residence time and distribution of the particles, including emission region, cloud condensation nucleus activity and removal by ice-phase precipitation. The global distribution depends strongly on the assumptions made about uptake into cloud droplets and ice. The transport is also affected, to a lesser extent, by the emission region, particulate diameter, and season. We find that the seasonal variation in atmospheric residence time is insufficient to explain by itself the observed seasonal variation in concentrations of particulate airborne culturable bacteria, indicating that this variability is mainly driven by seasonal variations in culturability and/or emission strength. We examine the potential for exchange of bacteria between ecosystems and obtain rough estimates of the flux from each ecosystem by using a maximum likelihood estimation technique, together with a new compilation of available observations described in a companion paper. Globally, we estimate the total emissions of bacteria-containing particles to the atmosphere to be 7.6×1023–3.5×1024 a−1, originating mainly from grasslands, shrubs and crops. We estimate the mass of emitted bacteria- to be 40–1800 Gg a−1, depending on the mass fraction of bacterial cells in the particles. In order to improve understanding of this topic, more measurements of the bacterial content of the air and of the rate of surface-atmosphere exchange of bacteria will be necessary. Future observations in wetlands, hot deserts, tundra, remote glacial and coastal regions and over oceans will be of particular interest.

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