Multiple non-ribosomal peptide synthetase genes determine peptaibol synthesis in Trichoderma virens

2005 ◽  
Vol 51 (5) ◽  
pp. 423-429 ◽  
Author(s):  
Xianying Wei ◽  
Fuquan Yang ◽  
David C Straney

Trichoderma virens, an imperfect fungus, is used as a biocontrol agent to suppress plant disease caused by soilborne fungal pathogens. Antimicrobial peptides it produces include peptaibols of 11, 14, and 18 amino acids in length. These peptaibols were previously reported to be synthesized by a non-ribosomal peptide synthetase (NRPS) encoded by the Tex1 gene in strain Tv29-8. The present study examined the Tex1 homolog in a commercially relevant T. virens strain, G20. Although the gene in G20 was 99% identical in DNA sequence to Tex1 in the 15.8 kb compared, gene disruption results indicate that it is only responsible for the production of an 18-mer peptaibol, and not 11-mer and 14-mer peptaibols. Additional NRPS adenylate domains were identified in T. virens and one was found to be part of a 5-module NRPS gene. Although the multimodule gene is not needed for peptaibol synthesis, sequence comparisons suggest that two of the individual adenylate domain clones might be part of a separate peptaibol synthesis NRPS gene. The results indicate a significant diversity of NRPS genes in T. virens that is unexpected from the literature.Key words: Hypocrea virens, Gliocladium virens, Trichoderma virens.

Plant Disease ◽  
2012 ◽  
Vol 96 (1) ◽  
pp. 148-148 ◽  
Author(s):  
J. Liu ◽  
H. D. Luo ◽  
W. Z. Tan ◽  
L. Hu

Conyza sumatrensis (Asteraceae), an annual or biennial plant, is native to North and South America. It is an invasive, noxious weed that is widespread in southern and southeastern China. It invades farm land and causes great losses to dry land crops, including wheat, corn, and beans. It also reduces biological diversity by crowding out native plants in the infested areas (3,4). During a search for fungal pathogens that could serve as potential biological control agents of C. sumatrensis, a leaf spot disease was observed in 2010 in Chongqing, China. An isolate (SMBC22) of a highly virulent fungus was obtained from diseased leaves. Pathogenicity tests were performed by placing 6-mm-diameter mycelial disks of 7-day-old potato dextrose agar (PDA) cultures of SMBC22 on leaves of 15 healthy greenhouse-grown plants of C. sumatrensis; the same number of control plants was treated with sterile PDA disks. Treated plants were covered with plastic bags for 24 h and maintained in a growth chamber with daily average temperatures of 24 to 26°C, continuous light (3,100 lux), and high relative humidity (>90%). Lesions similar to those observed in the field were first obvious on the SMBC22-inoculated leaves 3 days after inoculation. Symptoms became severe 7 to 9 days after inoculation. Control plants remained healthy. The fungus was reisolated from inoculated and diseased leaves and it was morphologically the same as SMBC22. The pathogenicity test was conducted three times. A survey of 10 southern and southeastern Chinese provinces revealed that the disease was widespread and it attacked leaves and stems of seedlings and mature plants of C. sumatrensis. Lesions on leaves were initially small, circular, and water soaked. The typical lesion was ovoid or fusiform, dark brown, and surrounded by a yellow halo. The spots coalesced to form large lesions and plants were often completely blighted. Fungal colonies of SMBC22 on PDA plates were initially white and turned dark gray. Colonies were circular with smooth edges with obvious rings of pycnidia on the surface. Aerial hyphae were short and dense. Pycnidia, black and immersed or semi-immersed in the medium, were visible after 12 days of incubation. Pycnidia were 72 to 140 μm in diameter. Conidia were produced in the pycnidia and were hyaline, unicellular, ellipsoidal, and 4.4 to 6.1 × 1.6 to 2.2 μm. To confirm identification of the fungus, genomic DNA was extracted from mycelia of a 7-day-old culture on PDA at 25°C (2). The internal transcribed spacer (ITS) gene of rDNA was amplified using primers ITS4/ITS5. The gene sequence was 524 bp long and registered in NCBI GenBank (No. HQ645974). BLAST analysis showed that the current sequence had 99% homology to an isolate of Phoma macrostoma (DQ 404792) from Cirsium arvense (Canada thistle) in Canada and reported to cause chlorotic symptoms on that host plant (1). To our knowledge, this is the first report of P. macrostoma causing disease on C. sumatrensis in China. P. macrostoma, thought of as a biocontrol agent of broadleaf weeds in Canada, has been patented in the United States. The current isolate of P. macrostoma is considered as a potential biocontrol agent of C. sumatrensis. References: (1) P. R. Graupner et al. J. Nat. Prod. 66:1558, 2004. (2) S. Takamatsu et al. Mycoscience 42:135, 2001. (3) W. Z. Tan et al. Page 177 in: Manual of Emergency Control Technology Invasive Pests in China. G. L. Zhang, ed. Science Press, Beijing, 2010. (4) C. Wang et al. J. Wuhan Bot. Res. 28:90, 2010.


2021 ◽  
Vol 10 (15) ◽  
pp. e296101522465
Author(s):  
Erika Valente de Medeiros ◽  
Lucas Figueira da Silva ◽  
Jenifer Sthephanie Araújo da Silva ◽  
Diogo Paes da Costa ◽  
Carlos Alberto Fragoso de Souza ◽  
...  

A better understanding of the use of biochar with Trichoderma spp. (TRI), considered the most studied tool for biological control, would increase our ability to set priorities. However, no studies exist using the two inputs on plant disease management. Here, we hypothesized that biochar and TRI would be used for the management of soilborne plant pathogens, mainly due to changes in soil properties and its interactions. To test this hypothesis, this review assesses papers that used biochar and TRI against plant diseases and we summarize the handling mechanisms for each input. Biochar acts by mechanisms: induction to plant resistance, sorption of allelopathic and fungitoxic compounds, increase of beneficial microorganisms, changes the soil properties that promote health and nutrient availability. Trichoderma as biocontrol agents by different mechanisms: mycoparasitism, enzyme and secondary metabolic production, plant promoter agent, natural decomposition agent, and biological agent of bioremediation. Overall, our findings expand our knowledge about the reuse of wastes transformed in biochar combined with Trichoderma has potential perspective to formulate products as alternative management tool of plant disease caused by soilborne fungal pathogen and add important information that can be suitable for development of strategy for use in the global health concept.


Author(s):  
John H. Perkins

In the years after the end of World War II, farmers, agricultural scientists, and policy makers in many countries all knew, or learned, that higher yields of wheat were what they wanted, and they were successful in achieving them. Their specific motivations were different, but their objectives were not. Not only were the objectives clear, but a central method by which the higher yields were to be achieved was plant breeding. Plant breeding itself was an applied science that had to be nested within organizations that supported it and its allies in the agricultural, biological, and engineering sciences. By 1950 wheat breeders believed that the number of factors governing yield was small, which meant that the research avenues likely to be fruitful were also few in number. The amount of water available and the responsiveness to soil fertility, especially nitrogen, were in most cases the key ingredients for higher yields. For wheat, the ability of the plant to resist invasion by fungal pathogens was almost as important as water and soil fertility. Water and fertility were needed in every crop year, but damage from fungal pathogens varied with weather. Thus plant disease was not necessarily a destructive factor every year. Control of water, soil fertility, and plant disease was therefore at the center of research programs in wheat breeding. A wheat breeder would find success if his or her program produced new varieties that gave higher yields within the context of water, soil fertility, and plant disease existing in the area. Ancillary questions also existed and in some cases matched the major factors in importance. Weed control was always a problem, so high-yielding wheat had to have some capacity to resist competition from weeds. Similarly, in some areas and some years, insects could cause damage. Wheat varieties therefore had to be able to withstand them somehow. Other factors of importance to wheat breeders were habit of growth and the color and quality of the grain. Winter wheats were useful in climates that had winters mild enough to allow planting in the fall and thus higher yields the next summer.


Genes ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 328 ◽  
Author(s):  
Mohammad Sayari ◽  
Magriet A. van der Nest ◽  
Emma T. Steenkamp ◽  
Nicole C. Soal ◽  
P. Markus Wilken ◽  
...  

In filamentous fungi, genes in secondary metabolite biosynthetic pathways are generally clustered. In the case of those pathways involved in nonribosomal peptide production, a nonribosomal peptide synthetase (NRPS) gene is commonly found as a main element of the cluster. Large multifunctional enzymes are encoded by members of this gene family that produce a broad spectrum of bioactive compounds. In this research, we applied genome-based identification of nonribosomal peptide biosynthetic gene clusters in the family Ceratocystidaceae. For this purpose, we used the whole genome sequences of species from the genera Ceratocystis, Davidsoniella, Thielaviopsis, Endoconidiophora, Bretziella, Huntiella, and Ambrosiella. To identify and characterize the clusters, different bioinformatics and phylogenetic approaches, as well as PCR-based methods were used. In all genomes studied, two highly conserved NRPS genes (one monomodular and one multimodular) were identified and their potential products were predicted to be siderophores. Expression analysis of two Huntiella species (H. moniliformis and H. omanensis) confirmed the accuracy of the annotations and proved that the genes in both clusters are expressed. Furthermore, a phylogenetic analysis showed that both NRPS genes of the Ceratocystidaceae formed distinct and well supported clades in their respective phylograms, where they grouped with other known NRPSs involved in siderophore production. Overall, these findings improve our understanding of the diversity and evolution of NRPS biosynthetic pathways in the family Ceratocystidaceae.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Neda Shokrollahi ◽  
Chai-Ling Ho ◽  
Nur Ain Izzati Mohd Zainudin ◽  
Mohd As’wad Bin Abul Wahab ◽  
Mui-Yun Wong

AbstractBasal stem rot (BSR) of oil palm is a disastrous disease caused by a white-rot fungus Ganoderma boninense Pat. Non-ribosomal peptides (NRPs) synthesized by non-ribosomal peptide synthetases (NRPSs) are a group of secondary metabolites that act as fungal virulent factors during pathogenesis in the host. In this study, we aimed to isolate NRPS gene of G. boninense strain UPMGB001 and investigate the role of this gene during G. boninense-oil palm interaction. The isolated NRPS DNA fragment of 8322 bp was used to predict the putative peptide sequence of different domains and showed similarity with G. sinense (85%) at conserved motifs of three main NRPS domains. Phylogenetic analysis of NRPS peptide sequences demonstrated that NRPS of G. boninense belongs to the type VI siderophore family. The roots of 6-month-old oil palm seedlings were artificially inoculated for studying NRPS gene expression and disease severity in the greenhouse. The correlation between high disease severity (50%) and high expression (67-fold) of G. boninense NRPS gene at 4 months after inoculation and above indicated that this gene played a significant role in the advancement of BSR disease. Overall, these findings increase our knowledge on the gene structure of NRPS in G. boninense and its involvement in BSR pathogenesis as an effector gene.


Life ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 257
Author(s):  
Hisayuki Komaki ◽  
Tomohiko Tamura

(1) Background: Phytohabitans is a recently established genus belonging to rare actinomycetes. It has been unclear if its members have the capacity to synthesize diverse secondary metabolites. Polyketide and nonribosomal peptide compounds are major secondary metabolites in actinomycetes and expected as a potential source for novel pharmaceuticals. (2) Methods: Whole genomes of Phytohabitans flavus NBRC 107702T, Phytohabitans rumicis NBRC 108638T, Phytohabitans houttuyneae NBRC 108639T, and Phytohabitans suffuscus NBRC 105367T were sequenced by PacBio. Polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) gene clusters were bioinformatically analyzed in the genome sequences. (3) Results: These four strains harbored 10, 14, 18 and 14 PKS and NRPS gene clusters, respectively. Most of the gene clusters were annotated to synthesis unknown chemistries. (4) Conclusions: Members of the genus Phytohabitans are a possible source for novel and diverse polyketides and nonribosomal peptides.


2014 ◽  
Vol 54 (4) ◽  
pp. 334-339 ◽  
Author(s):  
Samaneh Samavat ◽  
Asghar Heydari ◽  
Hamid Reza Zamanizadeh ◽  
Saeed Rezaee ◽  
Ali Alizadeh Aliabadi

Abstract Pseudomonas aureofaciens (30-84) is a phenazine producing bacterium and reported as asuccessful biocontrol agent of some plant fungal pathogens. In the present study, the possibility of biological control of cotton damping-off caused by Rhizoctonia solani (AG-4) through phenazine production by the 30-84 strain, was investigated. In the search for the development of bioformulations of Pa (m) (PhzR–) and Pa (w) (PhzR+) strains of 30-84, four new carriers including soybean meal (SM), cottonseed meal (CM), rice bran (RB), and talc powder (TAL) were selected. The efficacy of bacterial formulations in reducing disease incidence was evaluated in four intervals (15, 30, 45, and 60 days after sowing), and compared with each bacterial suspension efficacy under green-house conditions. The results revealed that organic carriers were more effective than talc powder. It was also found that all the bioformulations were more efficient than each bacterial suspension. The most effective in reducing disease incidence was Pa (w) + RB. In contrast, Pa (m), Pa (m) + TAL, and Pa (m) + RB did not significantly suppress the disease in comparison with the infested control. Thus, phenazine production as a main biocontrol mechanism of P. aureofaciens (30-84) may be affected by the kind of carriers used for the bioformulation development.


2011 ◽  
Vol 7 ◽  
pp. 1622-1635 ◽  
Author(s):  
Jan-Christoph Kehr ◽  
Douglas Gatte Picchi ◽  
Elke Dittmann

Cyanobacteria are prolific producers of natural products. Investigations into the biochemistry responsible for the formation of these compounds have revealed fascinating mechanisms that are not, or only rarely, found in other microorganisms. In this article, we survey the biosynthetic pathways of cyanobacteria isolated from freshwater, marine and terrestrial habitats. We especially emphasize modular nonribosomal peptide synthetase (NRPS) and polyketide synthase (PKS) pathways and highlight the unique enzyme mechanisms that were elucidated or can be anticipated for the individual products. We further include ribosomal natural products and UV-absorbing pigments from cyanobacteria. Mechanistic insights obtained from the biochemical studies of cyanobacterial pathways can inspire the development of concepts for the design of bioactive compounds by synthetic-biology approaches in the future.


2006 ◽  
Vol 96 (11) ◽  
pp. 1168-1174 ◽  
Author(s):  
P. S. Ojiambo ◽  
H. Scherm

Studies to evaluate the effectiveness of biological control in suppressing plant disease often report inconsistent results, highlighting the need to identify general factors that influence the success or failure of biological control in plant pathology. We conducted a quantitative synthesis of previously published research by applying meta-analysis to determine the overall effectiveness of biocontrol in relation to biological and application-oriented factors. For each of 149 entries (antagonist-disease combinations) from 53 reports published in Biological & Cultural Tests between 2000 and 2005, an effect size was calculated as the difference in disease intensity expressed in standard deviation units between the biocontrol treatment and its corresponding untreated control. Effect sizes ranged from -1.15 (i.e., disease strongly enhanced by application of the biocontrol agent) to 4.83 (strong disease suppression by the antagonist) with an overall weighted mean of 0.62, indicating moderate effectiveness on average. There were no significant (P >0.05) differences in effect sizes between entries from studies carried out in the greenhouse versus the field, between those involving soilborne versus aerial diseases, or among those carried out in conditions of low, medium, or high disease pressure (expressed relative to the disease intensity in the untreated control). However, effect sizes were greater on annual than on perennial crops, regardless of whether the analysis was carried out for all entries (P = 0.0268) or for those involving only soilborne diseases (P = 0.0343). Effect sizes were not significantly different for entries utilizing fungal versus bacterial biocontrol agents or for those targeting fungal versus bacterial pathogens. However, entries that used r-selected biological control agents (i.e., those having short generation times and producing large numbers of short-lived offspring) were more effective than those that applied antagonists that were not r-selected (P = 0.0312). Interestingly, effect sizes for entries that used Bacillus spp. as biological control agents were lower than for those that applied other antagonists (P = 0.0046 for all entries and P = 0.0114 for soilborne diseases). When only aerial diseases were considered, mean effect size was greater for entries that received one or two sprays than for those that received more than eight sprays of the biocontrol agent (P = 0.0002). This counterintuitive result may indicate that investigators often attempt unsuccessfully to compensate for anticipated poor performance in antagonist-disease combinations by making more applications.


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