Investigation of the mechanism of alkyl radical elimination from ionised pentenyl methyl and hexenyl methyl ethers by analysis of the collision-induced dissociation mass spectra of C4H7O+ and C5H9O+ ions

1993 ◽  
Vol 71 (7) ◽  
pp. 1073-1085 ◽  
Author(s):  
Andrew D. Wright ◽  
Richard D. Bowen

Collision-induced dissociation (CID) mass spectra are reported for C4H7O+ and C5H9O+ ions generated by loss of an alkyl radical from 11 isomers of C5H9OCH3+• and 8 isomers of C6H11OCH3+• produced by ionisation of alkenyl methyl ethers derived from stable alkenols. The oxonium product ions have acyclic structures (CH=CHCH=O+CH3 for C4H7O+; CH2=CH(CH3)C=O+CH3, CH3CH=CHCH=O+CH3, or CH2=(CH3)CCH=O+CH3 in the case of C5H9O+). Elimination of a methyl radical does not always occur by simple α-cleavage. Expulsion of an alkyl substituent attached to a carbon atom at either end of the C=C double bond also takes place readily; this process sometimes competes with or pre-empts α-cleavage, as is shown by 2H-labelling experiments. Plausible mechanisms for this σ′-cleavage are considered. A route involving a 1,2-H shift to the radical centre of a distonic ion, followed by γ-cleavage of the resultant ionised enol ether, is shown to provide the most accurate unifying description of this unusual fragmentation. The mechanistic significance of this interpretation of the σ′-cleavage is discussed by analysing the reverse reaction (addition of an alkyl radical to a methyl cationated enal) in frontier molecular orbital terms. A comparison is made between the mechanisms by which an alkyl radical is lost from ionised alkenyl methyl ethers by σ′-cleavage and the parallel process starting from ionised carboxylic acids or isomeric distonic ions derived from these CnH2n+1CO2H+• species. Both classes of fragmentation are best understood to occur via γ-cleavage of a distonic ion of general structure R1CH2CH•C+(X)OR2 (R1 = alkyl; X = OH, R2 = H; or X = H, R2 = CH3), thus yielding (R′)• and CH2 = CHC+(X)OR2.

2005 ◽  
Vol 11 (4) ◽  
pp. 381-387 ◽  
Author(s):  
Thanasis Karapanayiotis ◽  
Richard D. Bowen

Ionised benzimidazole and its isomeric α-distonic ion (or ionised ylid) have been examined by recording their metastable ion, collision-induced dissociation and neutralisation–reionisation mass spectra. These tautomers may be distinguished by careful consideration of key features of the collision-induced dissociation spectra, with or without prior neutralisation and reionisation. Formation of doubly-charged ions by charge stripping occurs preferentially when the α-distonic ion is subjected to collision. This α-distonic ion survives neutralisation and reionisation, thus establishing that the corresponding ylid is stable on the microsecond time frame. The effects of benzannulation on the ease of differentiation of classical and distonic radical cations derived from biologically important heterocycles are considered.


2008 ◽  
Vol 14 (5) ◽  
pp. 281-297 ◽  
Author(s):  
Amin Kamel ◽  
Burnaby Munson

The collision-induced dissociation (CID) mass spectra were obtained for the X+-adducts (X = Na+ or Li+) of five tetracyclines, four pyrimidine and three purine derivatives and their fully D-exchanged species in which the labile hydrogens were replaced by deuterium by either gas- or liquid-phase exchange. The CID spectra were obtained for [M + Na]+ and [M + Li]+ and the exchanged analogs, [M(D) + Na]+ and [M(D) + Li]+, and compositions of product ions and mechanisms of decomposition were determined by comparison of the MS n spectra of the undeuterated and deuterated species. Metal ions are bound to the base of purine and pyrimidine anti-viral agents and dissociate primarily to give the metal complexes of the base [B + X]+. For vidarabine monophosphate, however, the metal ions are bound to the phosphate group, resulting in unique and characteristic cleavage reactions not observed in the uncomplexed system and dissociate through the loss of phosphate and/or a phosphate metal ion complex. The [B + X]+ of these anti-viral agents are relatively stable and show little or no fragmentation compared to [B + H]+. The CID of [B + X]+ of guanine derivatives occurs mainly through elimination of NH3 and that of trifluoromethyl uracil dissociates primarily through the loss of HF. For tetracyclines, metal ions are bound to ring A at the tricarbonylmethyl group and dissociate initially by the loss of NH3/ND3 from [MH + X]+ and [MD – X]+. The CID spectra of [M + X]+ of tetracyclines are somewhat similar to those of [M + H]+. The dominant fragments from the metal complexes of these compounds are charge remote decompositions involving molecular rearrangements and the loss of small stable molecules. Additionally, tetracyclines and the anti-viral agents show more selectivity towards the Li+ ion than the corresponding complexes with Na+ or K+.


2009 ◽  
Vol 15 (4) ◽  
pp. 497-506 ◽  
Author(s):  
Tomasz Pospieszny ◽  
Elżbieta Wyrzykiewicz

Electron ionisation (EI) and fast atom bombardment (FAB) mass spectral fragmentations of nine 2,4-(and 2,1-) disubstituted o-( m- and p-)nitro-(chloro- and bromo-)-2-thiocytosinium halides are investigated. Fragmentation pathways, whose elucidation is assisted by accurate mass measurements and metastable transitions [EI-mass spectrometry (MS)], as well as FAB/collision-induced dissociation (CID) mass spectra measurements are discussed. The correlations between the abundances of the (C11H10N4SO2)+1–3; (C11H10N3SCl)+4–6 and (C11H10N3SBr)+7–9 ions and the selected fragment ions (EI-MS), as well as (C18H16N5SO4)+1–3; (C18H16N3SCl2)+4–6 and (C18H16N3SBr2) + 7–9 ions and the selected ions (C7H6NO2)+1–3; (C7H6Cl)+ 4–6; (C7H6Br)+ 7–9 (FAB-MS) are discussed. The data obtained can be used for distinguishing isomers.


1986 ◽  
Vol 21 (6) ◽  
pp. 317-319 ◽  
Author(s):  
Sabatino Nacson ◽  
Alex. G. Harrison ◽  
William R. Davidson

Molecules ◽  
2019 ◽  
Vol 24 (3) ◽  
pp. 611 ◽  
Author(s):  
Arnold Steckel ◽  
Gitta Schlosser

Tandem mass spectrometry is an important tool for structure elucidation of natural and synthetic organic products. Fragmentation of odd electron ions (OE+) generated by electron ionization (EI) was extensively studied in the last few decades, however there are only a few systematic reviews available concerning the fragmentation of even-electron ions (EE+/EE−) produced by the currently most common ionization techniques, electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI). This review summarizes the most important features of tandem mass spectra generated by collision-induced dissociation fragmentation and presents didactic examples for the unexperienced users.


2020 ◽  
Vol 2 (5) ◽  
Author(s):  
Shinji Tsunoi ◽  
Nao Yamamoto ◽  
Tomohiro Yasuhisa ◽  
Riko Akehi ◽  
Itaru Suzuki ◽  
...  

Abstract We report a 4-t-butylbenzyl derivatization for the analysis of carboxylic acids by GC–MS (EI). Carboxylic acids were analyzed as a 4-t-butylbenzyl ester after the derivatization with 4-t-butylbenzyl bromide. On the mass spectra of 4-t-butylbenzyl ester, [M-15]+ ions were observed with high intensity. These ions were tertiary benzyl cations generated by the elimination of a methyl radical from molecular ions. After optimization of the 4-t-butylbenzyl derivatization conditions using microwave reactor, we established a method for the determination of the carboxylic acids in water samples. The method showed good sensitivity and good reproducibility, and was successfully applied to the analysis of rain water samples.


1964 ◽  
Vol 42 (11) ◽  
pp. 2086-2101 ◽  
Author(s):  
William McGowan ◽  
Larkin Kerwin

The role of some excited ions in laboratory ion–molecule reactions has been investigated, and their possible importance in the upper atmosphere considered. The mass spectrometer techniques of Aston banding and of comparing I.P. curves of parent and product ions have been applied to studies of collision-induced dissociation and charge exchange of oxygen and nitrogen in their parent gas. In every case studied, cross sections depended markedly upon the presence in the ion beam of ions in metastable or long-lived radiative states. In order that an ion reach the collision region, it had to have a mean lifetime greater than 3 μsec.The a 4Πu and b 4Σg excited states of O2+ were identified in the collision[Formula: see text]Higher states of O2+, which have not as yet been identified spectroscopically, were found in the collision[Formula: see text]The thresholds of these new states are 23.9, 27.9, 31.3, and 34.1 eV with an uncertainty ±0.2 eV. From the collision-induced dissociation of N2+, the A 2Πu and the [Formula: see text] states have been identified. Also, the reported transfer of the ν = 3 level of the B [Formula: see text] to the ν = 14 level of the A 2Πu was found.The cross section for 10/01 charged exchange of N2+ in N2 exhibited a marked decrease as excited-state ions diluted the beam. The 10/01 collisions of N+ in N2 and O+ in O2 exhibited an increase in cross section as metastables were added to the parent ion beam. The 10/20 reaction of O2+ in O2 was also observed to depend on excited O2+ ions.


1979 ◽  
Vol 57 (3) ◽  
pp. 335-341 ◽  
Author(s):  
Timothy R. B. Jones ◽  
Jack M. Miller ◽  
Sylvia A. Gardner ◽  
Marvin D. Rausch

The mass spectra of a number of phospholes and metalloles of general structure 1 and 2 are[Formula: see text]discussed with respect to their fragmentation and ion rearrangement processes. Of special interest is the migration of ring fluorines to the central atom during fragmentation. The bonding principles involved for the postulated intermediates are discussed.


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