X-Ray structure determination of 1,2-anhydro-3,4:5,6-di-O-isopropylidene-1-C-nitro-D-mannitol

1988 ◽  
Vol 66 (7) ◽  
pp. 1600-1604 ◽  
Author(s):  
Walter A. Szarek ◽  
George W. Hay ◽  
Ramesh K. Sood ◽  
Konia Trouton ◽  
Suzanne Fortier
Keyword(s):  
Crystal Structure ◽  
Hydrogen Peroxide ◽  
Direct Methods ◽  
Major Product ◽  
Calculated Density ◽  
Aqueous Sodium ◽  
X Ray ◽  
X Ray Crystallography ◽  
Cell Dimensions

The structure of the major product of the reaction of 1,2-dideoxy-3,4:5,6-di-O-isopropylidene-1-C-nitro-D-arabino-hex-1-enitol with 30% hydrogen peroxide and aqueous sodium hydrogencarbonate has been confirmed by X-ray crystallography to be that of 1,2-anhydro-3,4:5,6-di-O-isopropylidene-1-C-nitro-D-mannitol (2). The crystal structure of 2, C12H19NO7, is orthorhombic, P212121, with cell dimensions a = 10.269(3), b = 15.115(7), c = 9.295(8) Å, and Z = 4. The calculated density is Dx = 1.336 gcm−3. The structure was solved by direct methods and refined to a residual R = 0.052. The molecule has a 2G− conformation having bond lengths and angles in agreement with those observed in related structures, except for the C(1)—C(2), C(2)—C(3), and O(2N)—N bond distances which were found to be unusually small.

Crystal structure determination of the conformation of two bicyclo[3.3.1]nonan-ones

1985 ◽  
Vol 63 (6) ◽  
pp. 1166-1169 ◽  
Author(s):  
John F. Richardson ◽  
Ted S. Sorensen
Keyword(s):  
Crystal Structure ◽  
Direct Methods ◽  
Chair Conformation ◽  
Molecular Structures ◽  
Boat Conformation ◽  
X Ray Diffraction ◽  
Space Group ◽  
X Ray ◽  
Final Agreement

The molecular structures of exo-7-methylbicyclo[3.3.1]nonan-3-one, 3, and the endo-7-methyl isomer, 4, have been determined using X-ray-diffraction techniques. Compound 3 crystallizes in the space group [Formula: see text] with a = 15.115(1), c = 7.677(2) Å, and Z = 8 while 4 crystallizes in the space group P21 with a = 6.446(1), b = 7.831(1), c = 8.414(2) Å, β = 94.42(2)°, and Z = 2. The structures were solved by direct methods and refined to final agreement factors of R = 0.041 and R = 0.034 for 3 and 4 respectively. Compound 3 exists in a chair–chair conformation and there is no significant flattening of the chair rings. However, in 4, the non-ketone ring is forced into a boat conformation. These results are significant in interpreting what conformations may be present in the related sp2-hybridized carbocations.

Configurational and conformational studies on condensation products of biogenic amines with 2,5-anhydro-D-mannose

1985 ◽  
Vol 63 (11) ◽  
pp. 2915-2921 ◽  
Author(s):  
Ian M. Piper ◽  
David B. MacLean ◽  
Romolo Faggiani ◽  
Colin J. L. Lock ◽  
Walter A. Szarek
Keyword(s):  
Hydrogen Bond ◽  
Intermolecular Hydrogen Bond ◽  
Direct Methods ◽  
Conformational Studies ◽  
X Ray ◽  
X Ray Crystallography ◽  
H Nmr ◽  
Twist Conformation ◽  
Cell Dimensions ◽  
Internal Hydrogen Bond

The products of a Pictet–Spengler condensation of tryptamine and of histamine with 2,5-anhydro-D-mannose have been studied by X-ray crystallography to establish their absolute configuration. 1(S)-(α-D-Arabinofuranosyl)-1,2,3,4-tetrahydro-β-carboline (1), C16H20N20O4, is monoclinic, P21 (No. 4), with cell dimensions a = 13.091(4), b = 5.365(1), c = 11.323(3) Å, β = 115.78(2)°, and Z = 2. 4-(α-D-Arabinofuranosyl)imidazo[4,5-c]-4,5,6,7-tetrahydropyridine (3), C11H17N3O4, is orthorhombic, P212121 (No. 19), with cell dimensions a = 8.118(2), b = 13.715(4), c = 10.963(3) Å, and Z = 4. The structures were determined by direct methods and refined to R1 = 0.0514, R2 = 0.0642 for 3210 reflections in the case of 1, and to R1 = 0.0312, R2 = 0.0335 for 1569 reflections in the case of 3. Bond lengths and angles within both molecules are normal and agree well with those observed in related structures. In 3 the base and sugar adopt a syn arrangement, which is maintained by an internal hydrogen bond between O(2′) and N(3). The sugar adopts a normal 2T3 twist conformation. The sugar has the opposite anti arrangement in the β-carboline 1 and the conformation of the sugar is unusual; it is close to an envelope conformation with O(4′) being the atom out of the plane. This conformation is caused by a strong intermolecular hydrogen bond from O(5′) in a symmetry-related molecule to O(4′). Both compounds are held together in the crystal by extensive hydrogen-bonding networks. The conformations of the compounds in solution have been investigated by 1H nmr spectroscopy, and the results obtained were compared with those obtained by X-ray crystallography for 1 and 3.

scholarly journals The reaction of 3,5-diphenyl-1,2-dithiolium-4-olate with aniline: the crystal structure of 1-phenylimino-2-phenylamino-3-phenylindene

1987 ◽  
Vol 65 (12) ◽  
pp. 2830-2833 ◽  
Author(s):  
David M. McKinnon ◽  
Peter D. Clark ◽  
Robert O. Martin ◽  
Louis T. J. Delbaere ◽  
J. Wilson Quail
Keyword(s):  
Molecular Structure ◽  
Crystal Structure ◽  
Single Crystal ◽  
Least Squares ◽  
Direct Methods ◽  
Monoclinic Space Group ◽  
X Ray Diffraction ◽  
X Ray ◽  
Cell Dimensions ◽  
Unit Cell Dimensions

3,5-Diphenyl-1,2-dithiolium-4-olate (1) reacts with aniline to form 1-phenylimino-2-phenylamino-3-phenylindene (3a). Under suitable conditions, 6-phenylbenzo[b]indeno[1,2-e]-1,2-thiazine is also formed. These structures are confirmed by alternative syntheses. The molecular structure of 3a has been determined by single crystal X-ray diffraction. Compound 3a crystallizes in the monoclinic space group C2/c with unit cell dimensions a = 20.777(3) Å, b = 6.130(3) Å, c = 31.327(3) Å, 3 = 99.59(1)°, and Z = 8. The structure was solved by direct methods and refined by least squares to a final R = 0.055. The molecular structure of 3a shows the three phenyl containing substituents to have the planes of their ring systems tilted between 40° and 60° from the plane of the indene system due to steric repulsions.

Odigitriaite, CsNa5Ca5[Si14B2O38]F2, a new caesium borosilicate mineral from the Darai-Pioz alkaline massif, Tajikistan: Description and crystal structure

2017 ◽  
Vol 81 (1) ◽  
pp. 113-122 ◽  
Author(s):  
Atali A. Agakhanov ◽  
Leonid A. Pautov ◽  
Elena Sokolova ◽  
Frank C. Hawthorne ◽  
Vladimir Yu Karpenko ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Double Layer ◽  
Direct Methods ◽  
Double Layers ◽  
Monoclinic Space Group ◽  
X Ray Diffraction ◽  
Calculated Density ◽  
X Ray ◽  
Mohs Hardness ◽  
Alkaline Massif

AbstractOdigitriaite, a new Cs, Na, Ca borosilicate mineral, was discovered in moraine adjacent to the Darai-Pioz alkaline massif in the upper reaches of the Darai-Pioz river at the intersection of the Turkestansky, Zeravshansky and Alaisky mountain ridges, Tajikistan. It occurs as irregular thin flakes associated with quartz, pectolite, baratovite, fluorite, pekovite, polylithionite, aegirine, leucosphenite, pyrochlore, neptunite, reedmergnerite, mendeleevite-(Ce), zeravshanite and sokolovaite. It is colourless with a white streak, is translucent and has a vitreous lustre; it does not fluoresce under ultraviolet light. Odigitriaite is brittle with an uneven fracture and a Mohs hardness of 5. The calculated density is 2.80(2) g/cm3. The indices of refraction are α = 1.502, β = 1.564, γ = 1.576; 2Vobs = 46(2)°, dispersion is weak r > v, and there is no pleochroism. The chemical composition is as follows (electron microprobe, H2O calculated from structure): SiO2 55.30, Al2O3 0.09, Y2O3 0.44, MnO 0.94, FeO 0.10, PbO 0.21, K2O 0.01 Cs2O 8.36, B2O3 4.75, H2O 0.37, F 1.74, O = F2 –0.74, total 99.43 wt.%. The empirical formula of odigitriaite is Cs0.90Na5.12Ca4.68Mn0.20Y0.06Fe0.02Pb0.01[Si13.92Al0.03B2.06O38]F1.39(OH)0.62. The end-member formula is CsNa5Ca5[Si14B2O38]F2. The strong reflections in the powder X-ray diffraction pattern are: [(d, Å), (I, %), (hkl)]: 5.45 (25) (1 1 3), 4.66 (33) (3 1 1), 4.40 (26) (0 2 2), 4.10 (36) (3 1 3), 3.95 (25) (3̄ 1 3), 2.85 (31) (2 2 2), 2.68 (40) (0 0 6), 3.62 (45) (0 2 4), 3.35 (100) (2̄ 2 4), 3.31 (30) (3̄ 1 5), 3.25 (35) (4 0 4), 3.04 (60) (4̄ 2 2), 2.925 (22) (4̄ 2 3), 1.813 (23) (9 1 0). Odigitriaite is monoclinic, space group C2/c, a = 16.652(5), b = 9.598 (3), c = 22.120(7) Å, β= 92.875(14)°, V = 3530.9(1.9) Å3, Z = 4. The crystal structure of odigitriaite was solved by direct methods and refined to an R1 value of 2.75% based on single-crystal X-ray data. It is a double-layer sheet-borosilicate mineral; Cs and Na are intercalated within the double-layer sheet, and the double layers are linked by interstitial Ca and Na atoms.

Hydroniumpharmacosiderite, a new member of the pharmacosiderite supergroup from Cornwall, UK: structure and description

2010 ◽  
Vol 74 (5) ◽  
pp. 863-869 ◽  
Author(s):  
S. J. Mills ◽  
A. R. Kampf ◽  
P. A. Williams ◽  
P. Leverett ◽  
G. Poirier ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Diffraction Pattern ◽  
Powder Diffraction ◽  
Empirical Formula ◽  
Direct Methods ◽  
Structure Type ◽  
New Mineral ◽  
Calculated Density ◽  
X Ray ◽  
Mohs Hardness

AbstractHydroniumpharmacosiderite, ideally (H3O)Fe4(AsO4)3(OH)4·4H2O, is a new mineral from Cornwall, UK, probably from the St. Day group of mines. It occurs as a single yellowish green, slightly elongated cube, measuring 0.17 mm ×0.14 mm ×0.14 mm. The mineral is transparent with a vitreous lustre. It is brittle with a cleavage on {001}, has an irregular fracture, a white streak and a Mohs hardness of 2–3 (determined on H3O-exchanged pharmacosiderite). Hydroniumpharmacosiderite has a calculated density of 2.559 g cm–3 for the empirical formula. The empirical formula, based upon 20.5 oxygen atoms, is: [(H3O)0.50K0.48Na0.06]1.04(Fe3.79Al0.22)4.01[(As2.73P0.15)2.88O12](OH)4·4H2.14O. The five strongest lines in the X-ray powder diffraction pattern are [dobs(Å),Iobs,(hkl)]: 8.050,100,(001); 3.265,35,(112); 2.412,30,(113); 2.830,23,(202); 4.628,22,(111). Hydroniumpharmacosiderite is cubic, space group with a = 7.9587(2) Å, V = 504.11(2) Å3 and Z = 1. The crystal structure was solved by direct methods and refined to R1 = 0.0481 for 520 reflections with I > 2σ(I). The structure is consistent with determinations for H3O-exhchanged pharmacosiderite and the general pharmacosiderite structure type.

Ring contraction of 4-substituted 2,6-dichlorophenols. The crystal structure of 2,2,4α,5α-Tetrachloro-1α,3α-dihydroxycyclopentane-1,4-carbolactone

1977 ◽  
Vol 30 (10) ◽  
pp. 2195 ◽  
Author(s):  
RM Christie ◽  
RW Rickards ◽  
KJ Schmalzl ◽  
D Taylor
Keyword(s):  
Crystal Structure ◽  
Least Squares ◽  
Direct Methods ◽  
Major Product ◽  
X Ray Diffraction ◽  
Ring Contraction ◽  
Full Matrix ◽  
Space Group ◽  
X Ray ◽  
Counter Data

Alkaline chlorination of the 4-alkyl-2,6-dichlorophenols (2b) and (2c) proceeds through ring contraction and halolactonization to form the 4α- alkyl-2,2,5α-trichloro-1α,3α-dihydroxycyclopentane-1,4-carbolactones (4b) and (4c). Under similar conditions, 2,4,6-trichlorophenol affords the analogous 2,2,4α,5α-tetrachloro-1α,3α-dihydroxycyclopentane-1,4- carbolactone (4a) in low yield, in addition to the Hantzsch acid (3a) as the major product. The acid (3a) upon further treatment undergoes chloro-lactonization to give the lactone (4a). The structures of the lactones (4b) and (4c) follow from spectroscopic comparison with (4a), the structure of which has been established by X-ray diffraction (C6H4Cl4O4 orthorhombic a 13.485(1), b 12.348(1), c 11.371(1) Ǻ, space group Pccn, Z 8, solved by direct methods and refined by block-diagonal and full-matrix least squares to R 0.031, Rw 0.043 for 1313 unique counter data with I/σ(I) ≥ 3.0).

The geometry of 4-(1-ethoxyethylidene)-5-oxazolones and thiazolones: 1H and 13C studies and the crystal structure of 4-[(Z)-1-ethoxyethylidene]-2-phenyl-5-oxazolone

1985 ◽  
Vol 63 (12) ◽  
pp. 3618-3630 ◽  
Author(s):  
R. A. Bell ◽  
R. Faggiani ◽  
C. J. L. Lock ◽  
R. A. McLeod
Keyword(s):  
Crystal Structure ◽  
Chemical Shifts ◽  
Substituent Effects ◽  
Side Chain ◽  
Oxazole Ring ◽  
X Ray ◽  
X Ray Crystallography ◽  
Cell Dimensions ◽  
Ring Nitrogen ◽  
E And Z Isomers

A series of E and Z isomers of substituted 4-(1-ethoxyethylidene)-5-oxazolones and thiazolones have been prepared and their 1H and 13C spectra recorded. The vinylic methyl 1H chemical shifts showed minimal differences between E and Z isomers whereas the vinylic OCH21H signals differed by 0.15–0.43 ppm, with the Z isomer being consistently the more deshielded. Both vinylic methyl and OCH2 groups showed different 13C resonances for each isomer, with the Z isomers being the more deshielded. The Z geometry was conclusively defined for one isomer of 4-(1-ethoxyethylidene)-2-phenyl-5-oxazolone, 5, by X-ray crystallography and this was sufficient to assign the geometry of the remaining pairs of E and Z isomers. Oxazolone 5 has the space group P21/n and cell dimensions a = 9.219(3), b = 19.899(5), c = 7.459(1) Å, β = 118.01(2)°, and has four formula units in the unit cell. Intensities were measured with use of MoKα radiation and a Nicolet P3 diffractometer. The crystal structure was determined by standard methods and refined to R1 = 0.0709, R2 = 0.0696 based on 1419 independent reflections. The molecule is essentially planar and most bond lengths and angles are normal. Exceptions are the very short C(olefin)—O(ether) bond (1.339(4) Å) and the large ether C—O—C angle (122.1(3)°) caused by extreme delocalization in the O(ether)CCCO(carbonyl) system. The planarity causes a number of strong intramolecular repulsive interactions, causing an exceptionally small external olefin angle, O(ether)CC(methyl), of 108.1(4)°. The ethoxyl side chain of 5 adopts a conformation in the solid state which places the methylene of the OCH2 group adjacent to the oxazole ring nitrogen. This conformation is proposed to persist in solution phases and is consistent with the observed 13C chemical shifts and known γ and δ substituent effects.

scholarly journals Studies of azo and azoxy dyestuffs. Part 17. Synthesis and structure determination of isomeric α and β phenylazoxypyridines, N-oxides, and methiodides. A reexamination of the oxidation of phenylazopyridines and X-ray structure analyses of 4-(phenyl-α-azoxy)pyridinium methiodide and 4-(phenyl-β-azoxy)pyridine-N-oxide

1984 ◽  
Vol 62 (8) ◽  
pp. 1628-1639 ◽  
Author(s):  
E. Buncel ◽  
S. R. Keum ◽  
M. Cygler ◽  
K. I. Varughese ◽  
G. I. Birnbaum
Keyword(s):  
Crystal Structure ◽  
Least Squares ◽  
Inductive Effect ◽  
Heavy Atom ◽  
Direct Methods ◽  
X Ray ◽  
Proton Donors ◽  
Structure Determinations ◽  
Heavy Atom Method

In an extension of Wallach rearrangement studies into the phenylazoxypyridine series, an investigation of 4-, 3-, and 2-phenylazoxypyridines, the N-oxides, and methiodides is reported. Oxidation of 4- and 3-phenylazopyridine with peracetic acid gives rise to the α and β phenylazoxypyridine-N-oxides, contrary to previous literature reports on the obtention solely of the α isomers. 2-Phenylazopyridine, however, yields only the 2-(phenyl-α-azoxy)pyridine-N-oxide. These results are rationalized on the basis of field, resonance, and steric effects. An unprecedented reactivity difference has been observed in the reactions of the α,β isomers of phenylazoxypyridines under conditions of the Wallach rearrangement. This reactivity difference permits the isolation of the α-azoxy isomers from the α,β mixtures. Unequivocal confirmation of the structures has been obtained from X-ray crystal structure determinations of two representative compounds in this series, viz. 4-(phenyl-β-azoxy)pyridine-N-oxide (11) and 4-(phenyl-α-azoxy)pyridinium methiodide (12), which itself was formed by deoxygenation of 4-(phenyl-α-azoxy)pyridine-N-oxide, followed by methylation with methyl iodide. The crystal structure of 11 was solved by direct methods and refined by block-diagonal least squares to R = 0.041 for 2479 observed reflections. The asymmetric unit contains two independent molecules, both of which are planar. The structure of 12 was determined by the heavy-atom method and refined by full-matrix least squares to R = 0.043 for 1718 observed reflections. The molecules are not planar, the pyridine ring being rotated by 36.5° from the phenylazoxy plane. Evidence is presented for the existence of intramolecular [Formula: see text] and [Formula: see text] bonds in crystal structures of trans-azoxyarenes. The carbon atoms involved in these hydrogen bonds are ortho to the azoxy group and can act as proton donors as a result of the inductive effect of the adjacent nitrogen.

scholarly journals Crystal and Molecular Structure of Platinum(II) Complex with Bis(Diphenyl Phosphino)Methane

2019 ◽  
Vol 35 (5) ◽  
pp. 1546-1549
Author(s):  
Karwan Omer Ali ◽  
Hikmat Ali Mohammad ◽  
Thomas Gerber ◽  
Eric Hosten
Keyword(s):  
Crystal And Molecular Structure ◽  
Complex Structure ◽  
Complex Form ◽  
Monoclinic Crystal ◽  
Calculated Density ◽  
X Ray ◽  
X Ray Crystallography ◽  
Square Planar ◽  
Cell Dimensions ◽  
Unit Cell Dimensions

Platinum(II) complex consisting of the tertiarydiphosphine (dppm) ligand had been prepared from PdCl2 with one equiv. of dppm ligand to form [PtC2(dppmCl)] complex where as dppmCl is bis(dipheny1phosphino) chloromethene. Crystal was grown in dichloromethane by slow evaporation process and characterized by X-ray crystallography technic. The complex structure synthesized based upon the identification using X-ray Crystallography and FTIR was [PtC12(dppmCl)], the ligand dppm coordinated to the meta centre as bidentate chelating ligand and form square planar arrangement around Pt(II) metal centre. The bond distances of Pt-P1, Pt-P2, Pt- Cl1 and Pt-Cl2 are 2.217 (2), 2.217 (2), 2.3661 (19) and 2.3661 Aο respectively. The characterized results of Pt(II) complex using X-ray analysis illustrated that [PtC12(dppmCl)] Complex form monoclinic crystal with unit cell dimensions of a = 16.2034(5), b = 7.8274(2), and c = 19.2496 (6) Aο, with β = 98.918 (1)ο, Z=4, calculated density= 1.838 mg/m3, T= 200 k and space group C2/c

Photodecarbonylation of chiral cyclobutanones

1997 ◽  
Vol 75 (5) ◽  
pp. 518-522 ◽  
Author(s):  
Jailall Ramnauth ◽  
Edward Lee-Ruff
Keyword(s):  
Crystal Structure ◽  
Triplet State ◽  
Structure Determination ◽  
Major Product ◽  
X Ray ◽  
Principal Product ◽  
Independent Synthesis ◽  
Optically Pure ◽  
Absolute Stereochemistry

Triplet photosensitized irradiation of 2(S),3(R)-bis[(benzoyloxy)methyl]cyclobutanone gave optically pure (−)E-1(S),2(S)-bis(benzoyloxymethyl)cyclopropane as a major product in the nonpolar fraction along with its stereoisomer and cycloelimination products. The absolute stereochemistry of the chiral cyclopropane was established by independent synthesis and X-ray crystal structure determination of a synthetic precursor. The distribution of decarbonylation and cycloelimination products was inversely dependent on the concentration of the substrate. Irradiation of the same ketone in tetrahydrofuran or benzene gave mostly cycloelimination products. Addition of Michler's ketone increased the ratio of photodecarbonylation, suggesting a triplet state pathway for this process. This was corroborated by the addition of dicyanoethylene, which showed significant quenching of photodecarbonylation. Irradiation of 2(S)-[(benzoyloxy)methyl]cyclobutane in acetone gave the corresponding cyclopropane as the principal product. Keywords: photodecarbonylation, chiral cyclopropanes, cyclobutanones, triplet sensitization.

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