Abinitio studies of complexes between SiF4 and ammonia

1984 ◽  
Vol 62 (1) ◽  
pp. 27-31 ◽  
Author(s):  
J. M. Chehayber ◽  
S. T. Nagy ◽  
C. S. Lin

Abinitio minimal basis set STO-6G calculations show axial-SiF4•NH3 and trans-SiF4•2NH3 to be energetically more stable with respect to SiF4 and ammonia. All other geometrical isomers are 1.0–2.0 eV higher.Our calculation results rule out the steric hindrance between ligands as the reason SiF4•2NH3 is, according to experimental evidences, cis while complexes of bulkier ligands are trans.Since the cis-SiF4•2NH3 has a large electric dipole moment and a suitable charge arrangement it is conceivably the favoured form in the solid phase. The cis → trans rearrangement may take place under conditions where the advantages of the cis are not operative.Although there is some degree of covalency in the Si—N bond it remains largely electrostatic, with the lone pair of ammonia attracted to the positively charged Si atom. The lone pair does not appear to be extensively altered by the complex formation.

1988 ◽  
Vol 53 (10) ◽  
pp. 2308-2319 ◽  
Author(s):  
János G. Ángyán ◽  
György Ferenczy ◽  
Péter Nagy ◽  
Gábor Náray-Szabó

We present a modification of our bond increment method for the calculation of molecular electrostatic potentials and fields inside zeolite cavities. Introducing a variant of the Mulliken approximation for the off-diagonal matrix elements of the potential and optimizing the parameters of the modified formula, we achieved much better agreement with ab initio STO-3G minimal basis set results than with the original version. For a representative set of 10 small molecules the standard mean deviation between potentials calculated on the van der Waals surface with the ab initio and approximate methods is 9·1 kJ/mol. The relative error decreases from 21 to 9 per cent for the lone-pair regions of molecules modelling zeolite cavities. Applying the modified bond increment method for a realistic faujausite model we have found that the potential and field are almost exclusively of long-range origin. This means that, if using appropriate atomic charges, the monopole approximation gives correct results for electrostatic potentials and fields inside zeolite cavities.


1988 ◽  
Vol 66 (8) ◽  
pp. 2041-2044 ◽  
Author(s):  
R. J. McEachern ◽  
J. A. Weil ◽  
P. G. Mezey

Minimal basis set ab initio SCF-MO calculations were performed on the 21-atom system of tetramethoxymethane (tetramethyl orthocarbonate). The geometric configuration of this model was optimized in two conformations, one having quasi-S4 symmetry and the other D2d symmetry. The S4 conformation was found to be 8 kJ mol−1 lower in energy than the D2d conformation, at the STO-3G level. The calculated energy difference is consistent with the recently measured geometric configuration of crystalline tetrabenzyl orthocarbonate. The calculated values of the bond lengths and angles were compared to the results of an electron diffraction study of the methyl species, and agree well with experiment. The theoretical electric dipole moment was calculated to be 0.01 D.


2020 ◽  
Vol 2020 (12) ◽  
Author(s):  
D. Chicherin ◽  
V. Sotnikov

Abstract We complete the analytic calculation of the full set of two-loop Feynman integrals required for computation of massless five-particle scattering amplitudes. We employ the method of canonical differential equations to construct a minimal basis set of transcendental functions, pentagon functions, which is sufficient to express all planar and nonplanar massless five-point two-loop Feynman integrals in the whole physical phase space. We find analytic expressions for pentagon functions which are manifestly free of unphysical branch cuts. We present a public library for numerical evaluation of pentagon functions suitable for immediate phenomenological applications.


Blood ◽  
2019 ◽  
Vol 134 (Supplement_1) ◽  
pp. 439-439
Author(s):  
Wen Zhu ◽  
Yongwei Zheng ◽  
Mei Yu ◽  
Yaling Wu ◽  
Jianhui Wei ◽  
...  

Heparin-induced thrombocytopenia (HIT) is a common adverse drug reaction associated with frequent life-threatening thrombotic complications. The hallmark of HIT is polyclonal antibodies (Abs) that recognize platelet alpha granule chemokine PF4 when it binds to heparin (PF4/H). These Abs can be detected in solid phase assays that use PF4/H as a target (PF4 ELISA), but only a minority of patients testing positive actually have HIT, i.e., most heparin-induced Abs are non-pathogenic. In patients who have clinical HIT, Abs that activate platelets can be detected using a platelet-activation assay such as the serotonin release assay, or the PF4-dependent p-selectin expression assay (PEA) (Chest 2016; 150:506). Thus, there are at least two distinct types of heparin-induced Abs - those that react only in PF4 ELISA and are seemingly "non-platelet-activating" and "non-pathogenic" and those that are "platelet-activating" and "pathogenic". To date, the molecular basis for the differing clinical and serologic behaviors of pathogenic and non-pathogenic Abs is uncertain. To address this issue, we performed single cell cloning to clone B cell receptors from IgG1+ B cells from HIT patients. We deposited single B cells (CD19+IgG1+) from 6 patients with "classical" and 2 patients with "spontaneous" HIT into 96 well plates containing feeder cells (from G Kelsoe, Duke U) that support B cell proliferation and Ab secretion (Immunity 2018;48:174). Clones secreting IgG were first screened in PF4 ELISA and positive results were obtained with 55 clones from 6 patients. Further screening showed that 7 of these clones (from 4 patients) were also PEA-positive (platelet-activating). Clones positive only in PF4 ELISA, positive in both PF4 ELISA and PEA, or negative in PF4 ELISA were designated NP (non-pathogenic), PA (platelet-activating) and NB (non-binding), respectively. H and L chain variable regions were defined in 7 PA, 42 NP and 34 NB clones. The following findings were made when sequences in the 3 clonal groups were compared: PA clones preferentially used JH6 (p=0.002) and the VH3/JH6 combination (p=0.0003)The PA and NP Abs all employed κ chains, whereas κ chain usage for NB clones was 61% (p<0.0001).No preferred signatures were identified in κ chain complementarity determining regions (LCDR3) of PA clones that differentiate them from NP and NB Abs.PA Abs had longer heavy chain CDR3s (HCDR3) than NP (p<0.001) or NB (p=0.0001) AbsPA Abs contained more positively charged amino acid residues compared to NP (p=0.058) or NB (p=0.002) Abs.PA Abs contained more tyrosine residues compared to NP (p=0.067) or NB (p<0.0001) AbsFive of 7 PA clones contained an RX1-2K/RX1-2R/H (RKH) motif in HCDR3; the remaining 2 PA clones contained a string of at least 5 tyrosines (Y5 motif) in HCDR3. The RKH and Y5 motifs were not found in any of the 76 NP and NB clones. Substitution of alanine for positively charged residues of the RKH motif or of tyrosine residues in the Y5 motif in PA clones reduced PF4/H binding and platelet activation, arguing for functional significance of both motifs. Utilization of nearly identical H and L chains within 3 groups of clones and of shared H chains within 3 groups of clones (both PA and NP) was observed in multiple patients. Moreover, utilization of a shared H chain was observed within 3 NP clones from two unrelated patients. These findings indicate clonal amplification and convergence of the B cell (both PA and NP) response, likely in response to a common antigen. High throughput sequencing of IgG H chains were performed on peripheral blood mononuclear cells (PBMC) from 7 HIT patients and 3 healthy donors. Eleven of 1585 H chain sequences (0.69%) from HIT patients contained the RKH and 18 (1.1%) contained the Y5 motif. In 3 healthy donors, 4 of 1418 H chain sequences (0.28%) contained RKH and none (0%) contained Y5. The findings reflect amplification of B cells with receptors containing RKH and Y5 motifs in HIT patients (p=0.1 for excess RKH and p<0.0001 for Y5 in HIT). These observations provide the first characterization of Ig structural motifs that are favored for selection in the humoral immune response leading to HIT and suggest that the RKH and Y5 CDR3 motifs in particular may contribute importantly to Ab pathogenicity. Findings made are expected to facilitate further work to define features specific to "pathogenic" HIT Abs and, possibly, to identify genetic variants that predispose individuals to experience HIT. Disclosures Padmanabhan: Terumo BCT: Consultancy; Veralox Therapeutics: Membership on an entity's Board of Directors or advisory committees; Versiti Wisconsin: Patents & Royalties: Related to HIT patents; Retham Technologies: Equity Ownership; Janssen R&D: Consultancy.


2018 ◽  
Author(s):  
Marc E. Segovia ◽  
Oscar Ventura

<p>Diffusion Monte Carlo (DMC) and Reptation Monte Carlo (RMC) methods, have been applied to study some properties of the NaK molecule. Hartree-Fock (HF), Density Functional (DFT) and single and double configuration interaction (SDCI) wavefunctions with a valence quadruple zeta atomic natural orbital (VQZ/ANO) basis set were used as trial wavefunctions. Values for the potential energy curve, dissociation energy and dipole moment were calculated for all methods and compared with experimental results and previous theoretical derivations. Quantum Monte Carlo (QMC) calculations were shown to be useful methods to recover correlation in NaK, essential to obtain a reasonable description of the molecule. The equilibrium distance—interpolated from the potential energy curves—yield a value of 3.5 Å, in agreement with the experimental value. The dissociation energy, however, is not as good. In this case, a conventional CCSD(T) calculation with an extended aug-pc-4 basis set gives a much better agreement to experiment. On the contrary, the CCSD(T), other MO and DFT methods are not able to reproduce correctly the large dipole moment of this molecule. Even DMC methods with a simple HF trial wavefunction are able to give a better agreement to experiment. RMC methods are even better, and the value obtained with a B3LYP trial wavefunction is very close to the experimental one.</p>


1996 ◽  
Vol 424 ◽  
Author(s):  
Vyshnavi Suntharalingam ◽  
Stephen J. Fonash

AbstractAn electrically reversible depassivation/passivation phenomenon, recently found for hydrogen passivated polysilicon [1] is further explored in this report. This reversible effect is seen in both ECR and RE hydrogen passivated n-channel thin film transistors (TFTs) but is not seen in the corresponding hydrogen passivated pchannel TFrs, nor is it seen in either n- or p-channel TETs before hydrogenation. This phenomenon has been observed when room temperature bias stressing TFTs fabricated on solid phase or laser crystallized polysilicon films on quartz substrates [1]. A model involving hydrogen release or capture at defects, positively charged hydrogen motion in device electric fields, and subsequent hydrogen capture at other defects has been proposed. This phenomenon has significant implications for polycrystalline silicon TFT’ design and operation. By extension, it also offers significant insight into the stability problems of hydrogenated amorphous silicon.


Author(s):  
Dulal C. Ghosh ◽  
Sandip Kumar Rajak

In this report, Ghosh and Rajak have made a detailed quantum mechanical study of the variation of the dipole moment of ammonia as a function of its conformations evolving during the process of its umbrella inversion by invoking their method of dipole correlation of electronic structure as basis. Ghosh et al discover a surprising result that the variation of dipole moment mimics the total energy curve as a function of reaction coordinates revealing the fact that the dipole moment is one possible diagnostic descriptor of the conformational isomerism of molecules containing lone pair electrons. The dipole is calculated and partitioned into bond and lone pair components for a large number of conformations between the equilibrium shape and the transition state of inversion and the results are interpreted and correlated in terms of the localized molecular orbitals, LMOs generated from the canonical molecular orbitals, CMO’s of each conformation. Anderson, from the concept of space time symmetry, postulated that ammonia has zero dipole moment. Present study reveals that Anderson’s correlation relied upon the bond moment only while the major component of dipole of ammonia originates from the lone pair of nitrogen.


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