Water-soluble lysine-containing polypeptides. VI. A study of annealed complexes between calf thymus DNA and the following copolymers: poly-(L-lysyl-X), where X = Gly, L-Ala, L-Val, L-Leu, and L-Phe

1978 ◽  
Vol 56 (20) ◽  
pp. 2657-2664 ◽  
Author(s):  
Sandra L. Kielland ◽  
Lewis A. Slotin ◽  
Ross E. Williams
Keyword(s):  
Electron Micrographs ◽  
Water Soluble ◽  
Optical Measurements ◽  
Calf Thymus Dna ◽  
Synthetic Route ◽  
Circular Dichroism Spectra ◽  
Chain Branching ◽  
Calf Thymus ◽  
Polypeptide Synthesis ◽  
Circular Dichroïsm

Turbidity measurements, circular dichroism spectra, electron micrographs, and thermal–optical measurements have been made on complexes between sonicated DNA and several polypeptides with the following structure: poly-(L-lysine-L-X) where X = Gly, Ala, Val, Leu, Phe. The results are influenced by any method of polypeptide synthesis which results in chain branching of the polypeptide. When polypeptides prepared by the same synthetic route are incorporated into the complexes the results also depend on the polypeptide used. Five possible explanations are offered as sources of the latter observations.

Water-soluble lysine-containing polypeptides. V. Circular dichroisrm, electron microscopic, and thermal denaturation studies of the interaction of poly(L-lysyl-L-alanine) and poly(L-lysyl-D-alanine) with calf thymus DNA

1978 ◽  
Vol 56 (20) ◽  
pp. 2650-2656 ◽  
Author(s):  
Sandra L. Kielland ◽  
Lewis A. Slotin ◽  
Ross E. Williams
Keyword(s):  
Circular Dichroism ◽  
Secondary Structure ◽  
Electron Micrographs ◽  
Thermal Denaturation ◽  
Water Soluble ◽  
Calf Thymus Dna ◽  
Circular Dichroism Spectra ◽  
Electron Microscopic ◽  
Calf Thymus ◽  
Circular Dichroïsm

Turbidity measurements, circular dichroism spectra, electron micrographs and thermal denaturation profiles of complexes between sonicated DNA and either poly(L-lysyl-L-alanine) or poly(L-lysyl-D-alanine) show significant differences which might be related to the primary or secondary structure of the polypeptides.

Interaction of a synthesized pyrene based fluorescent probe with CT-DNA: spectroscopic, thermodynamic and molecular modeling studies

RSC Advances ◽  
2016 ◽  
Vol 6 (96) ◽  
pp. 93335-93342 ◽  
Author(s):  
Soumen Ghosh ◽  
Abdulla Al Masum ◽  
Aniruddha Ganguly ◽  
Md. Akhtarul Alam ◽  
Md. Maidul Islam ◽  
...  
Keyword(s):  
Molecular Modeling ◽  
Fluorescent Probe ◽  
Water Soluble ◽  
Calf Thymus Dna ◽  
Modeling Studies ◽  
Calf Thymus ◽  
Molecular Modeling Studies ◽  
Ct Dna

The present study demonstrates the synthesis of a new pyrene based water soluble fluorescent probe and its interaction with Calf-thymus DNA.

Water-soluble lysine-containing polypeptides. IV. The synthesis, characterization,and circular dichroism spectra of sequential polypeptides formed from dipeptides of lysine and amino acids of increasing side chain size

1977 ◽  
Vol 55 (24) ◽  
pp. 4257-4266 ◽  
Author(s):  
Lewis A. Slotin ◽  
Denis R. Lauren ◽  
Ross E. Williams
Keyword(s):  
Amino Acids ◽  
Molecular Weight ◽  
Circular Dichroism ◽  
Secondary Structure ◽  
Gel Filtration ◽  
Circular Dichroism Spectroscopy ◽  
Water Soluble ◽  
Side Chain ◽  
Circular Dichroism Spectra ◽  
Circular Dichroïsm

Several polypeptides have been synthesized which contain the alternating sequence lysyl-X, where X = gly, L-ala, D-ala, L-val, L-leu, and L-phe. The polypeptides have been characterized by gel filtration (molecular weight) and by circular dichroism spectroscopy (secondary structure).

Circular Dichroism and Ultraviolet Absorbance of Calf Thymus DNA in Presence of CH3HgOH

1979 ◽  
Vol 34 (3-4) ◽  
pp. 259-265 ◽  
Author(s):  
Michael S. Clegg ◽  
Dieter W. Gruenwedel
Keyword(s):  
Circular Dichroism ◽  
Absorption Band ◽  
Calf Thymus Dna ◽  
Absorbance Spectrum ◽  
Absorption Bands ◽  
Long Wavelength ◽  
Ultraviolet Absorbance ◽  
Rotational Strength ◽  
Calf Thymus ◽  
Circular Dichroïsm

Abstract The changes that one observes upon the addition of CH3HgOH in the circular dichroism spec­trum and ultraviolet absorbance spectrum of native calf thymus DNA, dissolved in buffered (pH 6.8) solutions of Na2SO4 at pNa 2.0, 1.5, 1.0, and 0.0, respectively (pNa = - log [Na+]), are shown to be due to denaturation brought about by the organomercurial interacting with the base moieties of the polymer. The changes are characterized by an extensive shift of both spectra to longer wavelengths, by a decrease of the rotational strength of the long-wavelength positive dichroic absorption band, and by an increase in the UV absorbance at λmax . Both the hyperchromicity Hλ of calf thymus DNA and the normalized decrease of the rotational strength of its long-wavelength positive dichromic band, Ω , display cooperativity when plotted against the methylmercury concentration pM (pM = - log [CH3HgOH]added) at a given salt strength. Rotational strength data, evaluated by integration of the area under the positive and negative dichroic absorption bands, have been tabulated for selected values of pNa and pM. They are compared with data available from the literature. In absence of CH3HgOH, and with varying salt strength, native calf thymus DNA exhibits alterations in the long-wavelength positive dichroic absorption band that are interpreted as representing B → C transitions in agreement with currently held views regarding their origin. Similar salt-induced alterations have been noted in the case of denatured DNA; their meaning in terms of DNA geometry remains unclear at this point in time.

Thermodynamic investigation of manganese(III) 5-(1-(4-carboxybutyl)pyridinium-4-yl) 10,15,20-tris-(1-methylpyridinium-4-yl)porphyrin with calf thymus DNA

2009 ◽  
Vol 13 (08n09) ◽  
pp. 964-972 ◽  
Author(s):  
Hamid Dezhampanah ◽  
Abdol-Khalegh Bordbar ◽  
Shahram Tangestaninejad
Keyword(s):  
Fluorescence Emission ◽  
Resonance Light Scattering ◽  
Water Soluble ◽  
Calf Thymus Dna ◽  
External Mode ◽  
Calf Thymus ◽  
Enthalpy And Entropy Changes ◽  
Enthalpy And Entropy ◽  
Hoff Equation ◽  
Ct Dna

Binding properties of two water-soluble porphyrins, manganese(III) 5-(1-(4-carboxybutyl)pyridinium-4-yl) 10,15,20-tris(1-methylpyridinium-4-yl)porphyrin ( Mn(III)5-CBPyP ) and manganese(III) 5,10,15,20-tetrakis(1-methylpyridinium-4-yl)porphyrin ( Mn(III)TMPyP ), in the presence of various concentration of calf thymus DNA (ct-DNA), has been studied in 7.5 mM phosphate buffer, pH = 7.2 and at various temperatures by UV-vis absorption, resonance light scattering (RLS) and fluorescence spectroscopy and viscosity measurement. Optical absorption and RLS measurements have demonstrated three different species of both porphyrins form in DNA solution. The thermodynamic parameters were calculated by van't Hoff equation at various temperatures. The values of -4.89 kJ.mol-1 and +65.98 J.mol-1.K-1 for Mn(III)5-CBPyP and -14.92 kJ.mol-1 and +15.46 J mol-1.K-1 for TMPyP were estimated for enthalpy and entropy changes of interaction, respectively. The data indicate that the process is exothermic and enthalpy- and entropy-driven, suggesting that electrostatic forces play a considerable role in the interaction process. The binding of both porphyins to DNA quenches fluorescence emission of ethidium bromide (EB) and the quenching process obeys linear Stern-Volmer relationship, indicating the quenching of electron transfer of EB from its binding sites by these porphyrins. The results of using these techniques indicate the external mode of binding for both porphyrins and a higher binding affinity of Mn(III)5-CBPyP with respect to Mn(III)TMPyP .

Synthesis, crystal structure, DNA-binding and magnetism of copper 15-metallacrown-5 complexes based on glycinehydroxamic acid ligand

RSC Advances ◽  
2016 ◽  
Vol 6 (53) ◽  
pp. 47196-47202 ◽  
Author(s):  
Yanxia Meng ◽  
Hua Yang ◽  
Dacheng Li ◽  
Suyuan Zeng ◽  
Guifang Chen ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Circular Dichroism ◽  
Dna Binding ◽  
Fluorescence Spectroscopy ◽  
Calf Thymus Dna ◽  
Binding Properties ◽  
Acid Ligand ◽  
Calf Thymus ◽  
Dna Binding Properties ◽  
Circular Dichroïsm

Six lanthanide 15-MC-5 complexes based on glycinehydroxamic acid were synthesized. DNA-binding properties of the six complexes with calf thymus DNA were investigated using fluorescence spectroscopy and circular dichroism studies.

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