A theoretical analysis of the kinetics of the reaction of atomic bromine with tetrahydrofuran

2010 ◽  
Vol 88 (11) ◽  
pp. 1136-1145 ◽  
Author(s):  
John M.H. Lo ◽  
Robert A. Marriott ◽  
Binod R. Giri ◽  
John M. Roscoe ◽  
Mariusz Klobukowski

The kinetic behaviour for the reaction of atomic bromine with tetrahydrofuran has been analysed using the information from quantum chemical calculations. Structures and energy profiles were first obtained using density functional theory (DFT) employing the Dunning’s basis sets of triple-zeta quality, and then for an accurate energetic description, single-point calculations were carried out at the coupled-cluster with single and double excitations (CCSD) and the fourth-order Møller–Plesset (MP4(SDQ)) levels of theory. The rate coefficients and the equilibrium constants for the potential reaction channels were obtained from the statistical rate theories and statistical thermodynamics, respectively, using the results of quantum chemical calculations; and the results were compared with our recently published experimental data. In terms of reaction mechanism, this reaction was found to be analogous to the reactions of the Br atom with 1,4-dioxane and with methanol, where the reaction proceeds via an addition–elimination mechanism. The dominant reaction channel involved coordination of the approaching Br atom to one of the hydrogen atoms adjacent to the ether oxygen atom, i.e., β-hydrogen abstraction is uncompetitive. Although the complexes formed by direct coordination of the Br atom to the ether oxygen atom appeared in the reaction mechanism, we were not able to link them specifically to any reaction. The density functional theory predicted an activation energy and enthalpy of reaction that were much smaller than the experimental values, which led to an overestimation of the theoretical rate coefficients. The source of this discrepancy could be attributed to the overbinding of the transition states and of the tetrahydrofuranyl radical by DFT. Single-point calculations at the DFT structures using the CCSD and MP4(SDQ) methods yielded an accurate energetic description of the reaction of tetrahydrofuran with bromine, resulting in rate coefficients that showed excellent agreement with the experimental values.

Author(s):  
Paul Dauenhauer ◽  
Vineet Maliekkal ◽  
Matthew Neurock

Mechanistic insights into glycosidic bond activation in cellulose pyrolysis were obtained via first principles density functional theory calculations that explain the peculiar similarity in kinetics for different stereochemical glycosidic bonds (β vs α) and establish the role of the three-dimensional hydroxyl environment around the reaction center in activation dynamics. The reported activating mechanism of the α-isomer was shown to require an initial formation of a transient C1-O2-C2 epoxide, that subsequently undergoes transformation to levoglucosan. Density functional theory results from maltose, a model compound for the α-isomer, show that the intramolecular C2 hydroxyl group favorably interacts with lone pair electrons on the ether oxygen atom of an α-glycosidic bond in a manner similar to the hydroxymethyl (C6 hydroxyl) group interacting with the lone pair electrons on the ether oxygen atom of a β glycosidic bond. This mechanism has an activation energy of 52.4 kcal/mol, which is similar to the barriers reported for non-catalytic transglycosylation mechanism (~50 kcal/mol). Subsequent constrained ab initio molecular dynamics (AIMD) simulations revealed that vicinal hydroxyl groups in the condensed environment of a reacting carbohydrate melt anchor transition states via two-to-three hydrogen bonds and lead to lower free energy barriers (~32-37 kcal mol-1) in agreement with previous experiments.


2020 ◽  
Author(s):  
Paul Dauenhauer ◽  
Vineet Maliekkal ◽  
Matthew Neurock

Mechanistic insights into glycosidic bond activation in cellulose pyrolysis were obtained via first principles density functional theory calculations that explain the peculiar similarity in kinetics for different stereochemical glycosidic bonds (β vs α) and establish the role of the three-dimensional hydroxyl environment around the reaction center in activation dynamics. The reported activating mechanism of the α-isomer was shown to require an initial formation of a transient C1-O2-C2 epoxide, that subsequently undergoes transformation to levoglucosan. Density functional theory results from maltose, a model compound for the α-isomer, show that the intramolecular C2 hydroxyl group favorably interacts with lone pair electrons on the ether oxygen atom of an α-glycosidic bond in a manner similar to the hydroxymethyl (C6 hydroxyl) group interacting with the lone pair electrons on the ether oxygen atom of a β glycosidic bond. This mechanism has an activation energy of 52.4 kcal/mol, which is similar to the barriers reported for non-catalytic transglycosylation mechanism (~50 kcal/mol). Subsequent constrained ab initio molecular dynamics (AIMD) simulations revealed that vicinal hydroxyl groups in the condensed environment of a reacting carbohydrate melt anchor transition states via two-to-three hydrogen bonds and lead to lower free energy barriers (~32-37 kcal mol-1) in agreement with previous experiments.


2015 ◽  
Vol 13 (31) ◽  
pp. 8453-8464 ◽  
Author(s):  
Karim Engelmark Cassimjee ◽  
Bianca Manta ◽  
Fahmi Himo

The detailed half-transamination mechanism of Chromobacterium violaceum ω-transaminase is investigated by means of density functional theory calculations.


RSC Advances ◽  
2021 ◽  
Vol 11 (30) ◽  
pp. 18246-18251
Author(s):  
Selçuk Eşsiz

A computational study of metal-free cyanomethylation and cyclization of aryl alkynoates with acetonitrile is carried out employing density functional theory and high-level coupled-cluster methods, such as [CCSD(T)].


Energies ◽  
2021 ◽  
Vol 14 (6) ◽  
pp. 1663
Author(s):  
Laixing Luo ◽  
Xing Zheng ◽  
Jianye Wang ◽  
Wu Qin ◽  
Xianbin Xiao ◽  
...  

Biomass chemical looping gasification (CLG) is a novel gasification technology for hydrogen production, where the oxygen carrier (OC) transfers lattice oxygen to catalytically oxidize fuel into syngas. However, the OC is gradually reduced, showing different reaction activities in the CLG process. Fully understanding the CLG reaction mechanism of fuel molecules on perfect and reduced OC surfaces is necessary, for which the CLG of ethanol using Fe2O3 as the OC was introduced as the probe reaction to perform density functional theory calculations to reveal the decomposition mechanism of ethanol into the synthesis gas (including H2, CH4, ethylene, formaldehyde, acetaldehyde, and CO) on perfect and reduced Fe2O3(001) surfaces. When Fe2O3(001) is reduced to FeO0.375(001), the calculated barrier energy decreases and then increases again, suggesting that the reduction state around FeO(001) favors the catalytic decomposition of ethanol to produce hydrogen, which proves that the degree of reduction has an important effect on the CLG reaction.


2021 ◽  
pp. 014459872199495
Author(s):  
Songjian Du ◽  
Tingting Li ◽  
Xinwei Wang ◽  
Liqiang Zhang ◽  
Zhengda Yang ◽  
...  

Hydrodesulfurization reaction, as the last step of hydrothermal cracking reaction, is of great significance for the reduction of viscosity and desulfurization of heavy oil. Based on Density Functional Theory and using Dmol3 module of Materials Studio, this research simulated the adsorption and hydrodesulfurization of thiophene on Ni2P (001) surface, and discussed the hydrodesulfurization reaction mechanism of thiophene on Ni2P (001) surface. It was found that the direct hydrodesulfurization of thiophene had more advantages than the indirect hydrodesulfurization of thiophene. Finally, the optimal reaction path was determined: C4H4S+H2→C4H6.


Author(s):  
Houyu Zhu ◽  
Xin Li ◽  
Naiyou Shi ◽  
Xuefei Ding ◽  
Zehua Yu ◽  
...  

Ni/ZnO catalysts have been well recognized by industry and academia for exhibiting excellent desulfurization activities. However, intrinsic reaction mechanism on Ni active center is still obscure. Herein, we performed periodic...


2016 ◽  
Vol 39 (3-4) ◽  
Author(s):  
Sandeep Pokharia ◽  
Rachana Joshi ◽  
Mamta Pokharia ◽  
Swatantra Kumar Yadav ◽  
Hirdyesh Mishra

AbstractThe quantum-chemical calculations based on density functional theory (DFT) have been performed on the diphenyltin(IV) derivative of glycyl-phenylalanine (H


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