Kinetic analysis of compound I formation and the catalatic activity of chloroperoxidase

1981 ◽  
Vol 59 (4) ◽  
pp. 233-236 ◽  
Author(s):  
Tsunehisa Araiso ◽  
Rick Rutter ◽  
Monica M. Palcic ◽  
Lowell P. Hager ◽  
H. Brian Dunford

When the only substrate added to a solution of chloroperoxidase is a hydroperoxide, the reactions are: ferric enzyme + ROOH → compound I + ROH and compound I + ROOH → ferric enzyme + O2 + ROH. When H2O2 is used as substrate, the rate constants for the formation and catalatic decomposition of compound 1 are 2.4 × 106 M−1∙s−1 and 3.4 × 105 M−1∙s−1 at pH 4.7 and it is predicted that a maximum of 87% of the enzyme converts to compound I in the steady state of the catalatic reaction. With methyl hydroperoxide, formation of compound I has a rate constant of 4.7 × 105 M−1∙s−1 and its decomposition 2.9 × 104 M−1∙s−1. When peracetic acid is used, compound I is formed with a rate constant of 3.8 × 106 M−1∙s−1 and a 100% yield of compound I is obtained.

Gas-phase dissociation of fluorine ( 1 Ʃ + g ) molecules in an agron bath at 3000 K was studied by using the 3D Monte Carlo classical trajectory (3DMCCT) method. To assess the importance of the potential energy surface (PES) in such calculations, three surfaces, with a fixed, experimentally determined F 2 dissociation energy, were constructed. These surfaces span the existing experimental uncertainties in the shape of the F 2 potential. The first potential was the widest and softest; in the second potential the anharmonicity was minimized. The intermediate potential was constructed to ‘localize’ anharmonicity in the energy range in which the collisions are most reactive. The remaining parameters for each PES were estimated from the best available data on interatomic potentials. By using the single uniform ensemble (SUE) method (Kutz, H. D. & Burns, G. J. chem. Phys . 72, 3652-3657 (1980)), large ensembles of trajectories (LET) were generated for the PES. Two such ensembles consisted of 30000 trajectories each and the third of 26200. It was found that the computed one-way-flux equilibrium rate coefficients (Widom, B. Science 148, 1555-1560 (1965)) depend in a systematic way upon the anharmonicity of the potential, with the most anharmonic potential yielding the largest rate coefficient. Steady-state reaction-rate constants, which correspond to experimentally observable rate constants, were calculated by the SUE method. It was determined that this method yields (for a given trajectory ensemble, PES and translational temperature) a unique steady-state rate constant, independent of the initial, arbitrarily chosen, state (Tolman, R. C. The principles of statistical mechanics , p. 17. Oxford University Press (1938)) of the LET, and consequently independent of the corresponding initial value of the reaction rate coefficient. For each initial state of the LET, the development of the steady-state rate constant from the equilibrium rate coefficient was smooth, monotonic, and consistent with the detailed properties of the PES. It was found that, although the increased anharmonicity of the F 2 potential enhanced the equilibrium rate coefficients, it also enhanced the non-equilibrium effects. As a result, the steady-state rate constants were found to be insensitive to the variation of the PES. Thus, the differences among the steady-state rate constants for the three potentials were of the order of their standard errors, which was about 15% or less. On the other hand, the calculated rate constants exceeded the experimental rate constant by a factor of five to six. Because within the limitations of classical mechanics the calculations were ab initio , it was tentatively concluded that the discrepancy of five to six is due to the use of classical mechanics rather than details of the PES structure.


1983 ◽  
Vol 61 (9) ◽  
pp. 2037-2043 ◽  
Author(s):  
A. Baignée ◽  
J. H. B. Chenier ◽  
J. A. Howard

The major initial products of the self-reaction of α-tetralylperoxyls (C10H11O2•) in chlorobenzene at 303–353 K are equal concentrations of α-tetralol and α-tetralone in ~90% yield based on the number of initiating radicals. These yields are consistent with the non-radical (Russell) mechanism for self-reaction. Low concentrations of bis(α-tetralyl) peroxide are produced, indicating that there is a small but detectable free-radical contribution towards termination. C10H11O2• undergoes β-scission in this temperature range but steady-state concentrations of C10H11• are too low to influence the termination rate constant 2kt, or react with C10H11O2• to give (C10H11O2. α-Tetralol to α-tetralone ratios and total yields of these products are significantly less than 1 and 100%, respectively, in methanol and acetonitrile. Formaldehyde is produced in methanol indicating the involvement of α-hydroxymethylperoxyls, derived from the solvent, in termination. There is no evidence for a chain reaction or a zwitterion intermediate for self-reaction of C10H11O2• in solution.


1984 ◽  
Vol 99 (3) ◽  
pp. 769-777 ◽  
Author(s):  
T D Pollard

Using hexokinase, glucose, and ATP to vary reversibly the concentrations of ADP and ATP in solution and bound to Acanthamoeba actin, I measured the relative critical concentrations and elongation rate constants for ATP-actin and ADP-actin in 50 mM KCl, 1 mM MgCl2, 1 mM EGTA, 0.1 mM nucleotide, 0.1 mM CaCl2, 10 mM imidazole, pH 7. By both steady-state and elongation rate methods, the critical concentrations are 0.1 microM for ATP-actin and 5 microM for ADP-actin. Consequently, a 5 microM solution of actin can be polymerized, depolymerized, and repolymerized by simply cycling from ATP to ADP and back to ATP. The critical concentrations differ, because the association rate constant is 10 times higher and the dissociation rate constant is five times lower for ATP-actin than ADP-actin. These results show that ATP-actin occupies both ends of actin filaments growing in ATP. The bound ATP must be split on internal subunits and the number of terminal subunits with bound ATP probably depends on the rate of growth.


1971 ◽  
Vol 49 (10) ◽  
pp. 1165-1171 ◽  
Author(s):  
R. James Maguire ◽  
H. Brian Dunford ◽  
Martin Morrison

The kinetics of the formation of the primary lactoperoxidase – hydrogen peroxide compound (compound I) at 25 °C have been studied over the pH range 3.0–10.8 by steady state methods. The second-order rate constant k1 is pH-independent over the pH region investigated, having a value of (9.2 ± 0.9) × 106M−1s−1. An anomalous effect of formate buffer on the kinetics of the formation of compound I is reported.


2004 ◽  
Vol 279 (44) ◽  
pp. 45618-45625 ◽  
Author(s):  
Cristina Furdui ◽  
Lily Zhou ◽  
Ronald W. Woodard ◽  
Karen S. Anderson

Escherichia coliphenylalanine-sensitive 3-deoxy-arabino-heptulosonate 7-phosphate synthase (DAHP synthase) catalyzes the net aldol condensation of phosphoenolpyruvate and erythrose 4-phosphate to form 3-deoxy-d-arabino-heptulosonate 7-phosphate and inorganic phosphate. For the first time, the presteady-state kinetic analysis of the Phe-sensitive DAHP synthase fromE. coliis reported. The steady-state and presteady-state kinetic parameters of the DAHP synthase reconstituted with Mn(II), Cu(II), and Zn(II) were compared. These studies showed the following: 1) product release is rate-limiting for all of the three metal ions studied under physiologically relevant conditions; 2) concentration of the active sites of the metal-containing DAHP synthase is increasing from Mn- (30%) to Zn- (52%) and to Cu-DAHP synthase (88%); 3) rate constant for product formation is higher in Mn- (130–200 s–1) than Cu- (55 s–1) and Zn-DAHP synthase (6.8 s–1); and 4) steady-state rate (rate constant for product release) is higher for the Mn- (70 s–1) than for Cu- (5.6 s–1) and Zn-DAHP synthase (1.8 s–1). In addition, an examination of the reaction kinetics at lower pH reveals that for Cu-DAHP synthase, product release is no longer rate-limiting, whereas the Mn- and Zn-DAHP synthase show a slower rate of product formation, suggesting that the intermediate formation becomes rate-limiting in product formation. Also, a deuterium-isotope effect on the burst rate constant of product formation for Mn-DAHP synthase was observed at pH 6.0. This supports the hypothesis that the role of metal ion inE. coliDAHP synthase is to position the amino acids with the appropriate geometry required to coordinate and activate the water molecule.


1983 ◽  
Vol 48 (5) ◽  
pp. 1358-1367 ◽  
Author(s):  
Antonín Tockstein ◽  
František Skopal

A method for constructing curves is proposed that are linear in a wide region and from whose slopes it is possible to determine the rate constant, if a parameter, θ, is calculated numerically from a rapidly converging recurrent formula or from its explicit form. The values of rate constants and parameter θ thus simply found are compared with those found by an optimization algorithm on a computer; the deviations do not exceed ±10%.


1999 ◽  
Vol 64 (4) ◽  
pp. 585-594 ◽  
Author(s):  
Barbara Marczewska

The acceleration effect of p-toluidine on the electroreduction of Zn(II) on the mercury electrode surface in binary mixtures water-methanol and water-dimethylformamide is discussed. The obtained apparent and true forward rate constants of Zn(II) reduction indicate that the rate constant of the first electron transfer increases in the presence of p-toluidine. The acceleration effect may probably be accounted for by the concept of the formation on the mercury electrode an activated complex, presumably composed of p-toluidine and solvent molecules.


1995 ◽  
Vol 73 (12) ◽  
pp. 2137-2142 ◽  
Author(s):  
A.J. Elliot ◽  
M.P. Chenier ◽  
D.C. Ouellette

In this publication we report: (i) the rate constants for reaction of the hydrated electron with 1-hexyn-3-ol ((8.6 ± 0.3) × 108 dm3 mol−1 s−1 at 18 °C), cinnamonitrile ((2.3 ± 0.2) × 1010 dm3 mol−1 s−1 at 20 °C), and 1,3-diethyl-2-thiourea ((3.5 ± 0.3) × 108 dm3 mol−1 s−1 at 22 °C). For cinnamonitrile and diethylthiourea, the temperature dependence up to 200 °C and 150 °C, respectively, is also reported; (ii) the rate constants for the reaction of the hydroxyl radical with 1-hexyn-3-ol ((5.5 ± 0.5) × 109 dm3 mol−1 s−1 at 20 °C), cinnamonitrile ((9.2 ± 0.3) × 109 dm3 mol−1 s−1 at 21 °C), and diethylthiourea ((8.0 ± 0.8) × 108 dm3 mol−1 s−1 at 22 °C). For cinnamonitrile, the temperature dependence up to 200 °C is also reported; (iii) the rate constant for the hydrogen atom reacting with 1-hexyn-3-ol ((4.3 ± 0.4) × 109 dm3 mol−1 s−1 at 20 °C). Keywords: radiolysis, corrosion inhibitors, rate constants.


Sign in / Sign up

Export Citation Format

Share Document