The chemical and kinetic consequences of the modification of papain by N-bromosuccinimide

1977 ◽  
Vol 55 (4) ◽  
pp. 424-432
Author(s):  
Bernard R. Glick ◽  
Lewis J. Brubacher
Keyword(s):  
Kinetic Studies ◽  
Peptide Inhibitors ◽  
Tryptophan Residue ◽  
Difference Spectroscopy ◽  
Tyrosine Residues ◽  
Residue Determination ◽  
Chain Cleavage ◽  
Modified Enzyme ◽  
Kinetics Of ◽  
Twofold Decrease

Nonactivated papain was treated with N-bromosuccinimide at pH 4.75. The N-bromosuccinimide-modified enzyme was characterized by (1) the change in absorbance at 280 nm, (2) amino acid analysis, (3) separate chemical determinations of tryptophan and tyrosine, (4) difference spectroscopy, and (5) an N-terminal residue determination. It is concluded that N-bromosuccinimide in sevenfold molar excess oxidizes one tryptophan and two to three tyrosine residues per molecule of nonactivated papain, without causing peptide chain cleavage. Kinetic studies with several substrates and competitive peptide inhibitors were performed at pH 6 using the N-bromosuccinimide-modified papain. In addition, the kinetics of the modified enzyme with the substrate α-N-benzoyl-L-arginine ethyl ester were studied in the region of pH 3.5–9.0. All substrates (and inhibitors) tested, with the exception of α-N-benzoyl-L-arginine p-nitroanilide, displayed approximately a twofold decrease in both kcat and Km (or Ki), relative to the native enzyme. It is concluded that the key tryptophan residue which is modified is probably Trp-177.

Effect Of pH On The Stability And Conformation Of α-Thrombin

1981 ◽  
Author(s):  
German B Villanueva
Keyword(s):  
Chemical Modification ◽  
Structural Changes ◽  
Low Ph ◽  
Tryptophan Residue ◽  
Difference Spectroscopy ◽  
Compact Structure ◽  
Tyrosine Residues ◽  
Charge Interaction ◽  
The Stability ◽  
Peptide Region

It is known that storage at pH 6 stabilizes thrombin against inactivation. In order to determine whether structural changes accompany this stabilization, the conformation of human α-thrombin at pH 6.0 and 7.5 was investigated by chemical modification, solvent perturbation, UV difference spectroscopy and circular dichroism. It was shown that the CD spectra of α-thrombin at 230-200 nm peptide region were indistinguishable at two pH values indicating no difference in the secondary structure. However, differences were observed in the 320-250 nm aromatic region suggesting some changes in the microenvironment of the aromatic chromophores. Solvent perturbation in 20% ethylene glycol indicated 3.7 ± 0.5 Trp and 7.8 ± 0.5 Tyr were exposed to the solvent at pH 6.0 while 4.3 ± 0.4 Trp and 8.4 ± 0.5 Tyr were exposed at pH 7.5. Chemical modification of tryptophan residue by dimethyl(2-hydroxy- 5-nitrobenzyl)sulfonium bromide in a 100-fold molar excess of the reagent showed 3 reactive residues at pH 6.0 and 6 at pH 7.5. These results suggest that when thrombin is exposed to low pH, structural changes occur that decrease the relative degree of exposure of tryptophan and tyrosine residues. Furthermore, UV difference spectroscopy showed the development of a positive differential spectrum when thrombin at pH 6.0 was exposed to pH 7.5. From this study, it is concluded that the stability of thrombin at pH 6.0 is due to a more compact structure of the enzyme which is probably a result of reduced charge interaction at low pH.

scholarly journals Kinetic Studies of Cs+ and Sr2+ Ion Exchange Using Clinoptilolite in Static Columns and an Agitated Tubular Reactor (ATR)

2021 ◽  
Vol 5 (1) ◽  
pp. 9
Author(s):  
Muhammad Yusuf Prajitno ◽  
Mohamad Taufiqurrakhman ◽  
David Harbottle ◽  
Timothy N. Hunter
Keyword(s):  
Adsorption Capacity ◽  
Tubular Reactor ◽  
Process Intensification ◽  
Kinetic Studies ◽  
Breakthrough Curves ◽  
Maximum Adsorption Capacity ◽  
Batch Studies ◽  
Shear Mixing ◽  
Natural Clinoptilolite ◽  
Kinetics Of

Natural clinoptilolite was studied to assess its performance in removing caesium and strontium ions, using both static columns and an agitated tube reactor (ATR) for process intensification. Kinetic breakthrough curves were fitted using the Thomas and Modified Dose Response (MDR) models. In the static columns, the clinoptilolite adsorption capacity (qe) for 200 ppm ion concentrations was found to be ~171 and 16 mg/g for caesium and strontium, respectively, highlighting the poor material ability to exchange strontium. Reducing the concentration of strontium to 100 ppm, however, led to a higher strontium qe of ~48 mg/g (close to the maximum adsorption capacity). Conversely, halving the column residence time to 15 min decreased the qe for 100 ppm strontium solutions to 13–14 mg/g. All the kinetic breakthrough data correlated well with the maximum adsorption capacities found in previous batch studies, where, in particular, the influence of concentration on the slow uptake kinetics of strontium was evidenced. For the ATR studies, two column lengths were investigated (of 25 and 34 cm) with the clinoptilolite embedded directly into the agitator bar. The 34 cm-length system significantly outperformed the static vertical columns, where the adsorption capacity and breakthrough time were enhanced by ~30%, which was assumed to be due to the heightened kinetics from shear mixing. Critically, the increase in performance was achieved with a relative process flow rate over twice that of the static columns.

scholarly journals Biochar Chemistry in a Weathered Tropical Soil: Kinetics of Phosphorus Sorption

Agriculture ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 295
Author(s):  
Marina Moura Morales ◽  
Nicholas Brian Comerford ◽  
Maurel Behling ◽  
Daniel Carneiro de Abreu ◽  
Iraê Amaral Guerrini
Keyword(s):  
Mineral Soil ◽  
Soil Surface ◽  
Kinetic Studies ◽  
Inorganic Phosphorus ◽  
Initial Reaction ◽  
Phosphorus Sorption ◽  
P Sorption ◽  
Published Research ◽  
Kinetics Of

The phosphorus (P) chemistry of biochar (BC)-amended soils is poorly understood. This statement is based on the lack of published research attempting a comprehensive characterization of biochar’s influence on P sorption. Therefore, this study addressed the kinetic limitations of these processes. This was accomplished using a fast pyrolysis biochar made from a mix of waste materials applied to a highly weathered Latossolo Vermelho distrofico (Oxisol) from São Paulo, Brazil. Standard method (batch method) was used. The sorption kinetic studies indicated that P sorption in both cases, soil (S) and soil-biochar (SBC), had a relatively fast initial reaction between 0 to 5 min. This may have happened because adding biochar to the soil decreased P sorption capacity compared to the mineral soil alone. Presumably, this is a result of: (i) Inorganic phosphorus desorbed from biochar was resorbed onto the mineral soil; (ii) charcoal particles physically covered P sorption locations on soil; or (iii) the pH increased when BC was added SBC and the soil surface became more negatively charged, thus increasing anion repulsion and decreasing P sorption.

INHOMOGENEOUS LARGE DEFORMATION KINETICS OF POLYMERIC GELS

2013 ◽  
Vol 05 (01) ◽  
pp. 1350001 ◽  
Author(s):  
WILLIAM TOH ◽  
ZISHUN LIU ◽  
TENG YONG NG ◽  
WEI HONG
Keyword(s):  
Large Deformation ◽  
Soft Matter ◽  
Inner Core ◽  
Kinetic Studies ◽  
Fe Model ◽  
One Dimensional ◽  
Simplified Approach ◽  
Deformation Kinetics ◽  
Polymeric Gels ◽  
Kinetics Of

This work examines the dynamics of nonlinear large deformation of polymeric gels, and the kinetics of gel deformation is carried out through the coupling of existing hyperelastic theory for gels with kinetic laws for diffusion of small molecules. As finite element (FE) models for the transient swelling process is not available in commercial FE software, we develop a customized FE model/methodology which can be used to simulate the transient swelling process of hydrogels. The method is based on the similarity between diffusion and heat transfer laws by determining the equivalent thermal properties for gel kinetics. Several numerical examples are investigated to explore the capabilities of the present FE model, namely: a cube to study free swelling; one-dimensional constrained swelling; a rectangular block fixed to a rigid substrate to study swelling under external constraints; and a thin annulus fixed at the inner core to study buckling phenomena. The simulation results for the constrained block and one-dimensional constrained swelling are compared with available experimental data, and these comparisons show a good degree of similarity. In addition to this work providing a valuable tool to researchers for the study of gel kinetic deformation in the various applications of soft matter, we also hope to inspire works to adopt this simplified approach, in particular to kinetic studies of diffusion-driven mechanisms.

scholarly journals Kinetics of K release from soils of Brazilian coffee regions: effect of organic acids

2008 ◽  
Vol 32 (2) ◽  
pp. 533-540 ◽  
Author(s):  
Vladimir Antônio Silva ◽  
Giuliano Marchi ◽  
Luiz Roberto Guimarães Guilherme ◽  
José Maria de Lima ◽  
Francisco Dias Nogueira ◽  
...  
Keyword(s):  
Release Kinetics ◽  
Kinetic Studies ◽  
Release Rates ◽  
First Order ◽  
Potassium Release ◽  
Minas Gerais State ◽  
Soil Clay ◽  
Extractant Solution ◽  
Kinetics Of ◽  
K Release

Kinetic studies on soil potassium release can contribute to a better understanding of K availability to plants. This study was conducted to evaluate K release rates from the whole soil, clay, silt, and sand fractions of B-horizon samples of a basalt-derived Oxisol and a sienite-derived Ultisol, both representative soils from coffee regions of Minas Gerais State, Brazil. Potassium was extracted from each fraction after eight different shaking time periods (0-665 h) with either 0.001 mol L-1 citrate or oxalate at a 1:10 solid:solution ratio. First-order, Elovich, zero-order, and parabolic diffusion equations were used to parameterize the time dependence of K release. For the Oxisol, the first-order equation fitted best to the experimental data of K release, with similar rates for all fractions and independent of the presence of citrate or oxalate in the extractant solution. For all studied Ultisol fractions, in which K release rates increased when extractions were performed with citrate solution, the Elovich model described K release kinetics most adequately. The highest potassium release rate of the Ultisol silt fraction was probably due to the transference of "non-exchangeable" K to the extractant solution, whereas in the Oxisol exchangeable potassium represented the main K source in all studied fractions.

scholarly journals Real-time kinetic studies of Mycobacterium tuberculosis LexA-DNA interaction

2021 ◽  
Author(s):  
Chitral Chatterjee ◽  
Soneya Majumdar ◽  
Sachin Deshpande ◽  
Deepak Pant ◽  
Saravanan Matheshwaran
Keyword(s):  
Amino Acids ◽  
Mycobacterium Tuberculosis ◽  
Dna Binding ◽  
Kinetic Parameters ◽  
Dna Sequences ◽  
Kinetic Studies ◽  
Dna Interaction ◽  
Damage Repair ◽  
Inducible Genes ◽  
Kinetics Of

Transcriptional repressor, LexA, regulates the “SOS” response, an indispensable bacterial DNA damage repair machinery.  Compared to its E.coli ortholog, LexA from Mycobacterium tuberculosis (Mtb) possesses a unique N-terminal extension of additional 24 amino acids in its DNA binding domain (DBD) and 18 amino acids insertion at its hinge region that connects the DBD to the C-terminal dimerization/autoproteolysis domain. Despite the importance of LexA in “SOS” regulation, Mtb LexA remains poorly characterized and the functional importance of its additional amino acids remained elusive. In addition, the lack of data on kinetic parameters of Mtb LexA-DNA interaction prompted us to perform kinetic analyses of Mtb LexA and its deletion variants using Bio-layer Interferometry (BLI). Mtb LexA is seen to bind to different “SOS” boxes, DNA sequences present in the operator regions of damage-inducible genes, with comparable nanomolar affinity. Deletion of 18 amino acids from the linker region is found to affect DNA binding unlike the deletion of the N-terminal stretch of extra 24 amino acids. The conserved RKG motif has been found to be critical for DNA binding. Overall, this study provides insights into the kinetics of the interaction between Mtb LexA and its target “SOS” boxes. The kinetic parameters obtained for DNA binding of Mtb LexA would be instrumental to clearly understand the mechanism of “SOS” regulation and activation in Mtb.

scholarly journals Time-resolved flow-flash FT-IR difference spectroscopy: the kinetics of CO photodissociation from myoglobin revisited

2009 ◽  
Vol 394 (8) ◽  
pp. 2277-2277
Author(s):  
Michael Schleeger ◽  
Christoph Wagner ◽  
Michiel J. Vellekoop ◽  
Bernhard Lendl ◽  
Joachim Heberle
Keyword(s):  
Difference Spectroscopy ◽  
Time Resolved ◽  
Ft Ir ◽  
Kinetics Of

scholarly journals Kinetic studies of C1 and C2 Criegee intermediates with SO2 using laser flash photolysis coupled with photoionization mass spectrometry and time resolved UV absorption spectroscopy

2018 ◽  
Vol 20 (34) ◽  
pp. 22218-22227 ◽  
Author(s):  
N. U. M. Howes ◽  
Z. S. Mir ◽  
M. A. Blitz ◽  
S. Hardman ◽  
T. R. Lewis ◽  
...  
Keyword(s):  
Flash Photolysis ◽  
Laser Flash Photolysis ◽  
Kinetic Studies ◽  
Laser Flash ◽  
Major Product ◽  
Time Resolved ◽  
Photoionization Mass Spectrometry ◽  
Criegee Intermediates ◽  
Wide Range ◽  
Kinetics Of

Kinetics of CH2OO + SO2 confirmed over a wide range of [SO2]. Acetaldehyde observed as a major product of the reaction of CH3CHOO + SO2.

Kinetic Studies of Adsorption Process of Zambian Kapiri Mposhi Zeolites

2021 ◽  
Vol 37 (2) ◽  
pp. 467-475
Author(s):  
Marina G. Xavier
Keyword(s):  
Adsorption Process ◽  
Kinetic Studies ◽  
Solute Concentration ◽  
Exchange Property ◽  
Batch Adsorption ◽  
Reaction Conditions ◽  
Kinetics Of Adsorption ◽  
Calcination Temperatures ◽  
Optimum Reaction ◽  
Kinetics Of

Batch adsorption studies were done on aqueous solutions of Pb(NO3)2 at varying solute concentration, adsorbent dose, contact time, temperature, calcination temperatures and pH. Residual concentrations of the solute were found out using AAS and optimum conditions were studied. Adsorbent used in this study is locally available silicate rich mineral which closely resembles zeolites. The net negative charge on the framework of hydrated aluminosilicates is responsible for ion exchange property. Freundlich model was used to validate the results obtained from batch experiments plotting lnCe vs lnqe. Objective of this work is to study the kinetics of adsorption considering the interplay of particle diffusion in addition to proving the effectiveness as an adsorbent. A diffusion model also was also applied apart from kinetic model to analyze the experimental results more specifically. For maximizing the efficiency of the adsorption process and minimizing the time involved, variables like temperature, reactants and pH were manipulated using kinetic studies. It establishes the optimum reaction conditions for various experimental parameters in the process of adsorption.

Kinetics of Plasmon-Driven Hydrosilylation of Silicon Surfaces: Photogenerated Charges Drive Silicon- Carbon Bond Formation

2021 ◽  
Author(s):  
Chengcheng Rao ◽  
Brian Olsen ◽  
Erik Luber ◽  
Jillian Buriak
Keyword(s):  
Green Light ◽  
Kinetic Studies ◽  
Silicon Surfaces ◽  
Moderate Intensity ◽  
Carbon Bond ◽  
Silicon Carbon ◽  
Set Up ◽  
Kinetics Of ◽  
Insight Into

Optically transparent PDMS stamps coated with a layer of gold nanoparticles were employed as plasmonic stamps to drive surface chemistry on silicon surfaces. Illumination of a sandwich of plasmonic stamps, an alkene ink, and hydride-terminated silicon with green light of moderate intensity drives hydrosilylation on the surface. The key to the mechanism of the hydrosilylation is the presence of holes at the Si-H-terminated interface, which is followed by attack by a proximal alkene and formation of the silicon-carbon bond. In this work, detailed kinetic studies of the hydrosilylation on silicon with different doping levels, n++, p++, n, p, and intrinsic were carried out to provide further insight into the role of the metal-insulator-semiconductor (MIS) junction that is set up during the stamping.

Sign in / Sign up

Export Citation Format

Share Document