Characterisation of Nuclear and Cytoplasmic DNA Polymerases From Rat Intestinal Mucosa

1974 ◽  
Vol 52 (3) ◽  
pp. 162-169 ◽  
Author(s):  
Rozanne Poulson ◽  
J. Krasny ◽  
S. H. Zbarsky

Some properties of two DNA polymerases isolated from purified nuclei of rat intestinal mucosa were compared with those of a cytoplasmic DNA polymerase from the same tissue. The molecular weight of the NaCl-soluble nuclear polymerase was estimated to be 39 000, while a value of 100 000 was determined for both the Tris-soluble nuclear and cytoplasmic enzymes. The high molecular weight DNA polymerases shared many other common characteristics. Their chromatographic properties on DEAE-cellulose and phosphocellulose were identical. In the presence of 50 mM salt or 1 mM nalidixic acid the activities of the Tris-soluble nuclear and cytoplasmic enzymes were inhibited, whereas the activity of the low molecular weight NaCl-soluble nuclear enzyme was greatly enhanced. The activities of the three DNA polymerases were inhibited by sulfhydryl blocking agents. The NaCl-soluble nuclear enzyme showed maximal activity when native DNA that had been treated briefly with DNase I was supplied as the primer–template. Extensive treatment of the native DNA with DNase I, which converted 15% of it to acid-soluble form, reduced its templating activity by more than 90%. No incorporation was detected when denatured DNA was supplied as primer–template. In contrast, both native and denatured DNA served as primer–templates for the Tris-soluble nuclear and cytoplasmic DNA polymerases, and the most efficient primer–template tested was native DNA that had been rendered 15% acid soluble by digestion with DNase I.

1994 ◽  
Vol 72 (6) ◽  
pp. 818-822 ◽  
Author(s):  
P. Coello-Coutiño ◽  
E. García-Ramírez ◽  
J. M. Vázquez-Ramos

Three different DNA polymerase activities can be separated from germinating maize axes through DEAE – cellulose chromatography. Of these, DNA polymerase 2 appears to be a replicative-type enzyme composed of several subunits. An antibody has been developed against the DNA polymerase 2 multisubunit complex, which mainly recognizes a polypeptide of molecular weight around 90 kDa. Polypeptides of molecular mass of 83, 70, 60, 55, 45, and 24 kDa are also recognized. Activity gels showed that the 90-kDa polypeptide possesses catalytic activity. DNA polymerases 1 and 3 are not recognized by the antibody and their activities are not reduced. However, DNA polymerase 2 activity is reduced by 70%. The nature of the different DNA polymerase accompanying subunits is discussed. Key words: DNA polymerases, maize embryo axes.


Genomic DNA extraction is the starting point for various downstream molecular biology applications viz. PCR, restriction analysis, hybridisation etc. Numerous problems like DNA degradation, co-isolation of viscous polysaccharides, polyphenols and other secondary metabolites causing damage to DNA, inhibiting restriction enzymes, DNA polymerases etc, are routinely encountered during DNA isolation from plants. Quinone compounds resulting from oxidation of polyphenols lead brown the DNA preparations and can also damage proteins and DNA’s due to their oxidizing properties. This results in a poor yield of high molecular weight DNA. The protocol below explains the extraction of DNA via the CTAB method, involving three major steps viz lysis of cell wall and membranes, extraction of genomic DNA and precipitation of DNA.


1981 ◽  
Vol 91 (2) ◽  
pp. 179-188 ◽  
Author(s):  
A. PALA ◽  
G. MARINELLI ◽  
R. Di GREGORIO ◽  
G. SPAMPINATO ◽  
M. MORO ◽  
...  

Ultrafiltration of human sera resulted in increased levels of human chorionic gonadotrophin (hCG), LH and FSH measured by radioimmunoassay. The effect was greatly enhanced by chromatography of serum through Sepharose–protein A (which specifically binds immunoglobulin G) followed by ultrafiltration of the unretarded fractions. Serum from a normally menstruating woman was treated by ultrafiltration and the retained fraction from 200 μl serum further chromatographed on a Sephadex G-150 Superfine column. The amounts of LH and FSH measured in the eluate by radioimmunoassay were higher by three orders of magnitude than those found in the untreated serum. Comparable amounts of hCG were also found in the eluate by two specific radioimmunoassays, and a value of 45 i.u. hCG was recovered in the eluate by bioassay. Serum from another normally menstruating woman was applied to DEAE-cellulose and eluted stepwise using an elution gradient. The ultrafiltrate of one eluted fraction led to separation of a low molecular weight material which was able to neutralize the biological activity of a large dose of hCG. The data support the hypothesis that substantial amounts of gonadotrophins are normally present in serum but that binding to inhibitors(s) prevents their assay in untreated sera.


1977 ◽  
Author(s):  
G.A. Jamieson ◽  
T. Okumura

Glycocalicin is a high molecular weight (Mr 150,000) glycoprotein of the platelet glycocalyx which is obtained in soluble form following platelet homogenization. Under carefully controlled conditions, glycocalicin can be cleaved by endogenous or exogenous proteases (trypsin 1: 100, 2 min) to yield a macroglycopeptide (Mr 120,000) and a (nonglyco)peptide (Mr 45,000). These two fragments and intact glycocalicin have been compared with respect to their ability to prolong the thrombin clotting time of fibrinogen and to inhibit the binding of thrombin to intact platelets. The platelet macroglycopeptide was without effect in either system. The clotting time of fibrinogen (2mg/ml) by thrombin (2 u/ml) was prolonged from a control value of 16 sec to a value of 28 sec with glycocalicin (45 ug) and to 46 sec with the (nonglyco) peptide (6.5 ug). The binding of thrombin to intact platelets, as assayed by the Majerus technique, showed competitive inhibition with both glycocalicin and the (nonglyco)peptide, similar Ki values of 20-30 nanomolar being obtained in each case. These results indicate that the thrombin-binding site of platelet glycocalicin is located in the (nonglyco) peptide “tail” portion of the molecule.


1975 ◽  
Vol 151 (2) ◽  
pp. 239-247 ◽  
Author(s):  
A G McLennan ◽  
H M Keir

The two high-molecular-weight DNA polymerases from Euglena gracilis, pol A (mol. wt. 190 000) and pol B (mol. wt. 240 000), were differentiated on the basis of associated enzymic activities and primer-template utilization. Neither enzyme had endodeoxyribonuclease activity, but pol B, like pol B of yeast and the corresponding enzyme from Tetrahymena pyriformis, exhibited at least one other nuclease activity directed against denatured DNA and the RNA of an RNA-DNA hybrid. These nuclease functions preferred an alkaline pH and Mg2+. Pol B also exhibited nucleoside diphosphokinase activity. Both enzymes were active with ‘activated’ DNA and poly[d(A-T)] as primer-templates and were sensitive, especially pol B, to inhibition by excess of native or heat-denatured DNA. Pol B also utilized oligo[d(T)] and poly(A) templates under certain conditions, whereas pol A exhibited only slight activity with poly[d(A)]. (U)6 was not used as a primer by either enzyme.


2020 ◽  
Vol 65 (6) ◽  
pp. 1058-1064
Author(s):  
С.В. Пастон ◽  
◽  
А.М. Поляничко ◽  
О.В. Шуленина ◽  
Д.Н. Осинникова ◽  
...  

The aqueous environment and ionic surrounding are the most important factors determining the conformation of DNA and its functioning in the cell. The specificity of the interaction between DNA and cations is especially pronounced with a decrease in water activity. In this work, we studied the B-A transition in high molecular weight DNA with a decrease of humidity in the film with different contents of Na+ ions using FTIR spectroscopy. The IR spectrum of DNA is not only very sensitive to the state of its secondary structure, but also allows us to estimate the amount of water bound to DNA. Upon dehydration of the DNA film, changes characteristic of the B-A transition were observed in the IR absorption spectrum. Using thermogravimetric analysis, it was shown that the degree of DNA hydration reaches the saturation level at a relative humidity of 60% and decreases slightly upon further drying. It has been established that with increasing Na+ concentration, the amount of water strongly bound to DNA decreases. Along with it, sodium ions destroy the hydration shell of DNA and are able to interact directly with phosphate groups.


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