Amino acid sequence around the active site aspartic acid in penicillopepsin

1970 ◽  
Vol 48 (9) ◽  
pp. 1014-1016 ◽  
Author(s):  
J. Šodek ◽  
T. Hofmann
Keyword(s):  
Amino Acid ◽  
Methyl Ester ◽  
Amino Acid Sequence ◽  
Aspartic Acid ◽  
Strong Evidence ◽  
Active Site ◽  
Ester Group ◽  
Acid Proteinase ◽  
Penicillium Janthinellum ◽  
Porcine Pepsin

Penicillopepsin, the acid proteinase of Penicillium janthinellum, was specifically inactivated with diazoacetylnorleucine methyl ester. The peptide containing the glycollylnorleucine methyl ester group was isolated from a peptic digest. The amino acid sequence was found to be Ile∙Ala∙β(glycollyl-Nle OMe)-Asp∙Thr∙Gly∙Thr∙Thr∙Leu and is thus almost identical with the active site peptide of porcine pepsin: Ile∙Val∙Asp∙Thr∙Gly∙Thr∙Ser. This finding provides strong evidence for an evolutionary homology between penicillopepsin and porcine pepsin.

The Inactivation of Penicillopepsin with l,2-Epoxy-3-(p-nitrophenoxy)propane, an Active-Site Directed Reagent

1974 ◽  
Vol 52 (11) ◽  
pp. 1018-1023 ◽  
Author(s):  
G. Mains ◽  
T. Hofmann
Keyword(s):  
Methyl Ester ◽  
Aspartic Acid ◽  
Active Site ◽  
Side Chain ◽  
Porcine Pepsin ◽  
Protein Inactivation ◽  
Pepsin Inhibitor

Penicillopepsin was fully inactivated by the pepsin inhibitor 1,2-epoxy-3-(p-nitrophenoxy) propane, and 1.3 ± 0.3 mol of reagent became associated with each mole of protein. Inactivation was more rapid at pH 3.0 than at pH 6.0. Approximately 1 equivalent of the bound reagent was esterified to an aspartic acid side chain. Enzyme previously inactivated with diazoacetylnorleucine methyl ester did not react with the epoxide; and enzyme that was first inactivated with the epoxide did not react with the diazo inhibitor. The results add further evidence for the enzymatic similarity of porcine pepsin and penicillopepsin.

scholarly journals An active-site peptide from pepsin C

1971 ◽  
Vol 123 (1) ◽  
pp. 75-82 ◽  
Author(s):  
J. Kay ◽  
A. P. Ryle
Keyword(s):  
Methyl Ester ◽  
Aspartic Acid ◽  
Active Site ◽  
Carboxyl Group ◽  
Active Site Residue ◽  
Aspartic Acid Residue ◽  
Porcine Pepsin ◽  
Ph Values ◽  
Complete Inactivation ◽  
Active Site Sequence

Porcine pepsin C is inactivated rapidly and irreversibly by diazoacetyl-dl-norleucine methyl ester in the presence of cupric ions at pH values above 4.5. The inactivation is specific in that complete inactivation accompanies the incorporation of 1mol of inhibitor residue/mol of enzyme and evidence has been obtained to suggest that the reaction occurs with an active site residue. The site of reaction is the β-carboxyl group of an aspartic acid residue in the sequence Ile-Val-Asp-Thr. This sequence is identical with the active-site sequence in pepsin and the significance of this in terms of the different activities of the two enzymes is discussed.

Rhizopus Acid Proteinases (Rhizopus-pepsins): Properties and Homology with Other Acid Proteinases

1973 ◽  
Vol 51 (6) ◽  
pp. 789-796 ◽  
Author(s):  
J. E. S. Graham ◽  
J. Šodek ◽  
T. Hofmann
Keyword(s):  
Amino Acid ◽  
Methyl Ester ◽  
Active Site ◽  
Amino Acid Sequences ◽  
Acid Proteinase ◽  
Terminal Amino Acid ◽  
Isoelectric Focussing ◽  
Rhizopus Chinensis ◽  
Terminal Amino ◽  
Enzyme I

Commercial acid proteinase from Rhizopus chinensis has been further purified by isoelectric focussing. Two forms of the enzyme (I and II) with very similar properties have been obtained. Like other fungal acid proteinases they activate trypsinogen at pH 3.4 and are inhibited by diazoacetyl norleucine methyl ester. Because of the lability of the label it has not been possible to isolate the active site peptide from a peptic digest. N-terminal amino acid sequences were determined for Rhizopus enzyme I (NH2∙Ala∙Gly∙Val∙Gly∙Thr∙Val∙Pro∙Asx∙Thr), for Rhizopus enzyme II (NH2∙Ala∙Gly∙Val∙Gly∙Thr∙Val∙Pro), and for penicillopepsin (NH2∙Ala∙Ala∙Ser∙Gly∙Val∙Ala∙Thr∙Asn∙Thr∙Pro∙Thr). The similarity in enzymic properties and in the sequence suggests that the Rhizopus enzymes are homologous with penicillopepsin and hence also with mammalian pepsins and calf chymosin.

Amino acid sequence of penicillopepsin. II. Isolation and characterization of thermolytic peptides

1976 ◽  
Vol 54 (10) ◽  
pp. 885-894 ◽  
Author(s):  
Leticia Rao ◽  
Theo Hofmann
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Amino Acid Sequence ◽  
Active Site ◽  
Amino Acid Sequences ◽  
Porcine Pepsin ◽  
Isolation And Characterization

The determination of the amino acid sequences of 70 peptides obtained from a thermoiytic digest of penicillopepsin (EC 3.4.23.7) is described. Fifty-six unique sequences ranging from 2 to 13 amino acids were compiled. Among these was a heptapeptide whose sequence is nearly identical with that of the epoxide-reactive active site peptide of porcine pepsin (EC 3.4.23.1). Considering unrecognized overlaps, a minimum of 272 and a maximum of 293 unique amino acids have been obtained. They account for about 90% of the amino acids of the enzyme.

Isolation and characterization of a peptide derived from the active site of chicken pepsin

1980 ◽  
Vol 45 (7) ◽  
pp. 2131-2134 ◽  
Author(s):  
Helena Keilová ◽  
Vladimír Kostka ◽  
Miroslav Baudyš
Keyword(s):  
Amino Acid ◽  
Methyl Ester ◽  
Amino Acid Composition ◽  
Aspartic Acid ◽  
Acid Composition ◽  
Active Site ◽  
Its Sequence ◽  
Aspartic Acid Residue ◽  
Isolation And Characterization

A peptide was isolated from chicken pepsin which contains the aspartic acid residue reacting with diazoacetyl-D,L-norleucine methyl ester in the presence of Cu2+ -ions. The peptide is N-terminated with isoleucine and contains (besides isoleucine) valine, aspartic acid, two threonines, serine, and leucine. In concurrent experiments a peptide of the same composition was isolated from the thermolysin digest of chicken pepsin and its sequence determined as Ile-Val-Asp-Thr-Gly-Thr-Ser-Leu. Since both peptides have entirely identical amino acid composition and other characteristics, the sequenced peptide corresponds to the peptide isolated from the active site of the enzyme.

scholarly journals Derived amino acid sequence and identification of active site residues of Escherichia coli beta-hydroxydecanoyl thioester dehydrase.

1988 ◽  
Vol 263 (10) ◽  
pp. 4641-4646 ◽  
Author(s):  
J E Cronan ◽  
W B Li ◽  
R Coleman ◽  
M Narasimhan ◽  
D de Mendoza ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Amino Acid ◽  
Amino Acid Sequence ◽  
Active Site ◽  
Active Site Residues

scholarly journals Amino acid sequence of the active site of Acanthamoeba myosin II.

1986 ◽  
Vol 261 (4) ◽  
pp. 1844-1848
Author(s):  
M A Atkinson ◽  
E A Robinson ◽  
E Appella ◽  
E D Korn
Keyword(s):  
Amino Acid ◽  
Amino Acid Sequence ◽  
Active Site ◽  
Myosin Ii

scholarly journals The complete amino acid sequence of three alcohol dehydrogenase alleloenzymes (AdhN-11, AdhS and AdhUF) from the fruitfly Drosophila melanogaster

1980 ◽  
Vol 187 (3) ◽  
pp. 875-883 ◽  
Author(s):  
D R Thatcher
Keyword(s):  
Drosophila Melanogaster ◽  
Amino Acid ◽  
Amino Acid Sequence ◽  
Alcohol Dehydrogenase ◽  
Aspartic Acid ◽  
Structure Prediction ◽  
Secondary Structure Prediction ◽  
British Library ◽  
Horse Liver ◽  
And Staphylococcus Aureus

The sequence of three alcohol dehydrogenase alleloenzymes from the fruitfly Drosophila melanogaster has been determined by the sequencing of peptides produced by trypsin, chymotrypsin, thermolysin, pepsin and Staphylococcus aureus-V8-proteinase digestion. The amino acid sequence shows no obvious homology with the published sequences of the horse liver and yeast enzymes, and secondary structure prediction suggests that the nucleotide-binding domain is located in the N-terminal half of the molecule. The amino acid substitutions between AdhN-11 (a point mutation of AdhF), AdhS and AdhUF alleloenzymes were identified. AdhN-11 alcohol dehydrogenase differed from the other two by a glycine-14-(AdhS and AdhUF)-to-aspartic acid substitution, the AdhS enzyme from AdhN-11 and AdhUF enzymes by a threonine-192-(AdhN-11 and AdhUF)-to-lysine (AdhS) substitution and the AdhUF enzyme was found to differ by an alanine-45-(AdhS and AdhN-11)-to-aspartic acid (AdhUF) charge substitution and a ‘silent’ asparagine-8-(AdhS and AdhN-11)-to-alanine (AdhUF) substitution. Detailed sequence evidence has been deposited as Supplementary Publication SUP 50107 (36 pages) at the British Library Lending Division, Boston Spa, Wetherby, West Yorkshire LS23 7BQ, U.K., from whom copies can be obtained on the terms indicated in Biochem. J. (1978) 169, 5.

Glutamine active site of formylglycinamide ribonucleotide amidotransferase. 2. Amino acid sequence of labeled peptides

Biochemistry ◽  
1977 ◽  
Vol 16 (6) ◽  
pp. 1070-1076 ◽  
Author(s):  
Shiro Ohnoki ◽  
Bor-Shyue Hong ◽  
John M. Buchanan
Keyword(s):  
Amino Acid ◽  
Amino Acid Sequence ◽  
Active Site
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