FRUCTOSE DIPHOSPHATE ALDOLASE FROM FUSARIUM OXYSPORUM f. LYCOPERSICI: III. STUDIES ON THE MECHANISM OF REACTION

1967 ◽  
Vol 45 (12) ◽  
pp. 1909-1917 ◽  
Author(s):  
J. M. Ingram

Frnctose-1,6-diphosphate aldolase from Fusarium oxysporum f. lycopersici is inhibited by acetylimidazole. The inhibition is reduced in the presence of fructose diphosphate or DL-glyceraldehyde-3-phosphate, but not in the presence of dihydroxyacetone phosphate. Under conditions of almost total inactivation, as measured by the rate of cleavage of fructose diphosphate, the decrease in the rate of exchange is only 18%. These results indicate that the amino acid residues which are altered under these conditions are concerned with the D-glyceraldehyde-3-phosphate rather than the dihydroxyacetone phosphate active site.The rate of cleavage of fructose diphosphate in D2O decreases, with increasing pH, more rapidly than the rate in H2O and resembles the decreased rate of tritium exchange into dihydroxyacetone phosphate with increasing pH. These results suggest that a correlation exists between the isolated proton exchange and cleavage reactions and that the decreased rate of exchange and cleavage with increasing pH is due to a decreased rate of proton neutralization of the enzyme – dihydroxyacetone phosphate anion. The addition of acetaldehyde to the aldolase assays at pH 8.0 and pH 9.0 stimulates the cleavage rate of fructose diphosphate to a level normally obtained at pH 7.5, confirming the supposition that the release of dihydroxyacetone phosphate becomes rate limiting with increasing pH. The results obtained by following the cleavage in D2O also indicate that general base catalysis is involved in the proton neutralization step and that the pK of the general base is less than pH 6.0. The evidence suggests that the general base is either a β-COOH of aspartate or a γ-COOH of glutamate.

1979 ◽  
Vol 44 (3) ◽  
pp. 912-917 ◽  
Author(s):  
Vladimír Macháček ◽  
Said A. El-bahai ◽  
Vojeslav Štěrba

Kinetics of formation of 2-imino-4-thiazolidone from S-ethoxycarbonylmethylisothiouronium chloride has been studied in aqueous buffers and dilute hydrochloric acid. The reaction is subject to general base catalysis, the β value being 0.65. Its rate limiting step consists in acid-catalyzed splitting off of ethoxide ion from dipolar tetrahedral intermediate. At pH < 2 formation of this intermediate becomes rate-limiting; rate constant of its formation is 2 . 104 s-1.


1967 ◽  
Vol 45 (10) ◽  
pp. 1505-1511 ◽  
Author(s):  
J. M. Ingram

Fruetose-1,6-diphosphate aldolase purified from extracts of Fusarium oxysporum f. lycopersici was examined in detail. The different pH optima obtained for the proton exchange (pH 6.0) and cleavage (pH 7.5) reactions indicate that this enzyme resembles the yeast FDP-aldolase rather than the aldolase from muscle. When the enzyme was dialyzed extensively, in the absence of Cleland's reagent, it was found that neither the cleavage nor the exchange reaction rates were increased appreciably after addition of mercaptan. Treatment of the enzyme with either methylene blue in the presence of light or with diazosulfanilic acid, two known inhibitors of the cleavage reaction, resulted in almost complete inhibition of FDP cleavage but only a twofold decrease in the exchange capacity. These results substantiate our previous findings that the inhibitors react with residues involved in the D-glyceraldehyde-3-phosphate rather than the dihydroxyacetone phosphate active site.


F1000Research ◽  
2019 ◽  
Vol 8 ◽  
pp. 1462
Author(s):  
David M.J. Lilley

The nucleolytic ribozymes carry out site-specific RNA cleavage reactions by nucleophilic attack of the 2′-oxygen atom on the adjacent phosphorus with an acceleration of a million-fold or greater. A major part of this arises from concerted general acid–base catalysis. Recent identification of new ribozymes has expanded the group to a total of nine and this provides a new opportunity to identify sub-groupings according to the nature of the general base and acid. These include nucleobases, hydrated metal ions, and 2′-hydroxyl groups. Evolution has selected a number of different combinations of these elements that lead to efficient catalysis. These differences provide a new mechanistic basis for classifying these ribozymes.


1996 ◽  
Vol 61 (6) ◽  
pp. 951-956 ◽  
Author(s):  
Jaroslava Horáčková ◽  
Vojeslav Štěrba

The kinetics of reaction of 4-methoxybenzenediazonium ion (3) with 2,6-dihydroxypyridine (1) has been studied in methoxyacetate, acetate, and phosphate buffers. The rate-limiting step is the formation of the reaction intermediate and not the splitting off of the proton (which was detected in the cases of citrazinic acid and its methyl ester). Therefrom it follows that for 2,6-dihydroxypyridine derivatives the steric hindrance to the formation of the Wheland intermediate exerted by CO2- and CO2CH3 groups represents a necessary condition for the rate-limiting splitting off of the proton and, hence, for the existence of general base catalysis.


1992 ◽  
Vol 57 (9) ◽  
pp. 1915-1927
Author(s):  
Jaroslava Horáčková ◽  
Vojeslav Štěrba

The kinetics have been measured of the reactions of 4-nitro-, 4-chloro-, and 4-methoxybenzenediazonium ions with substituted phenylazo derivatives of citrazinic acid in buffer solutions, and the pKa values of the corresponding monoazo and bisazo compounds have been estimated. The reactions of 4-nitrobenzenediazonium ion with 4-chloro- and 4-methoxyphenylazo derivatives and of 4-chlorobenzenediazonium ion with 4-methoxyphenylazo derivative were accompanied by a partial replacement of the substituted phenylazo group by the 4-nitro- and 4-chlorophenylazo groups, respectively. The reactions of 4-chloro- and 4-methoxybenzenediazonium ions are subject to general base catalysis, the rate-limiting step consisting in the splitting off of the proton from the tetrahedral intermediate; with 4-nitrobenzenediazonium ion the reaction rate is limited by the formation of the tetrahedral intermediate.


1991 ◽  
Vol 56 (8) ◽  
pp. 1701-1710 ◽  
Author(s):  
Jaromír Kaválek ◽  
Vladimír Macháček ◽  
Miloš Sedlák ◽  
Vojeslav Štěrba

The cyclization kinetics of N-(2-methylcarbonylphenyl)-N’-methylsulfonamide (IIb) into 3-methyl-(1H)-2,1,3-benzothiadiazin-4(3H)-one 2,2-dioxide (Ib) has been studied in ethanolamine, morpholine, and butylamine buffers and in potassium hydroxide solution. The cyclization is subject to general base and general acid catalysis. The value of the Bronsted coefficient β is about 0.1, which indicates that splitting off of the proton from negatively charged tetrahedral intermediate represents the rate-limiting and thermodynamically favourable step. In the solutions of potassium hydroxide the cyclization of dianion of the starting ester IIb probably becomes the rate-limiting step.


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