Etude taxonomique d'entérobactéries appartenant ou apparentées à l'espèce Escherichia coli

1981 ◽  
Vol 27 (1) ◽  
pp. 98-106 ◽  
Author(s):  
F. Gavini ◽  
D. Izard ◽  
P. A. Trinel ◽  
B. Lefebvre ◽  
H. Leclerc
Keyword(s):  
Escherichia Coli ◽  
Numerical Analysis ◽  
Dna Hybridization ◽  
Dna Relatedness ◽  
E Coli ◽  
Definition Of

Phenetic (numerical analysis) and genetic (DNA–DNA hybridization) studies were carried out on strains belonging or related to the species Escherichia coli. They have shown the diversity of its phenotypes, by the presence of plasmidic characters (citrate+, urease+, H2S+, tetrathionate reductase+, raffinose+, and saccharose+). New strains related phenetically to E. coli are also individualized. They showed less than 30% DNA relatedness with E. coli. A new definition of E. coli is presented.

scholarly journals Genotypic and Phenotypic Traits That Distinguish Neonatal Meningitis-Associated Escherichia coli from Fecal E. coli Isolates of Healthy Human Hosts

2012 ◽  
Vol 78 (16) ◽  
pp. 5824-5830 ◽  
Author(s):  
Catherine M. Logue ◽  
Curt Doetkott ◽  
Paul Mangiamele ◽  
Yvonne M. Wannemuehler ◽  
Timothy J. Johnson ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Phylogenetic Group ◽  
Neonatal Meningitis ◽  
Phenotypic Traits ◽  
Healthy Human ◽  
Content Type ◽  
Plasmid Content ◽  
E Coli ◽  
Healthy Humans ◽  
Definition Of

ABSTRACTNeonatal meningitisEscherichia coli(NMEC) is one of the top causes of neonatal meningitis worldwide. Here, 85 NMEC and 204 fecalE. coliisolates from healthy humans (HFEC) were compared for possession of traits related to virulence, antimicrobial resistance, and plasmid content. This comparison was done to identify traits that typify NMEC and distinguish it from commensal strains to refine the definition of the NMEC subpathotype, identify traits that might contribute to NMEC pathogenesis, and facilitate choices of NMEC strains for future study. A large number ofE. colistrains from both groups were untypeable, with the most common serogroups occurring among NMEC being O18, followed by O83, O7, O12, and O1. NMEC strains were more likely than HFEC strains to be assigned to the B2 phylogenetic group. Few NMEC or HFEC strains were resistant to antimicrobials. Genes that best discriminated between NMEC and HFEC strains and that were present in more than 50% of NMEC isolates were mainly from extraintestinal pathogenicE. coligenomic and plasmid pathogenicity islands. Several of these defining traits had not previously been associated with NMEC pathogenesis, are of unknown function, and are plasmid located. Several genes that had been previously associated with NMEC virulence did not dominate among the NMEC isolates. These data suggest that there is much about NMEC virulence that is unknown and that there are pitfalls to studying single NMEC isolates to represent the entire subpathotype.

scholarly journals Enteroaggregative Escherichia coli: epidemiology, virulence and detection

2007 ◽  
Vol 56 (1) ◽  
pp. 4-8 ◽  
Author(s):  
Andrej Weintraub
Keyword(s):  
Escherichia Coli ◽  
Tissue Culture ◽  
Watery Diarrhoea ◽  
Biological Assays ◽  
E Coli ◽  
The Past ◽  
Sporadic Cases ◽  
Trained Staff ◽  
Definition Of ◽  
Specific Virulence

Enteroaggregative Escherichia coli (EAEC) is a subgroup of diarrhoeagenic E. coli (DEC) that during the past decade has received increasing attention as a cause of watery diarrhoea, which is often persistent. EAEC have been isolated from children and adults worldwide. As well as sporadic cases, outbreaks of EAEC-caused diarrhoea have been described. The definition of EAEC is the ability of the micro-organism to adhere to epithelial cells such as HEp-2 in a very characteristic ‘stacked-brick’ pattern. Although many studies searching for specific virulence factor(s) unique for this category of DEC have been published it is still unknown why the EAEC cause persistent diarrhoea. In addition, the aggregative property of EAEC causes a lot of problems in serotyping due to the cells auto-agglutinating. The gold standard for identification of EAEC includes isolation of the agent and an adherence assay using tissue culture, viz. HEp-2 cells. This assay is in most cases reliable; however, emergence of ‘atypical’ EAEC has been described in several publications. In addition, the HEp-2 assay is time consuming, demands a tissue culture lab and trained staff. Several molecular biological assays have been described, however, none show 100 % specificity.

scholarly journals ‘Super' or just ‘above average'? Supershedders and the transmission of Escherichia coli O157:H7 among feedlot cattle

2015 ◽  
Vol 12 (110) ◽  
pp. 20150446 ◽  
Author(s):  
Simon E. F. Spencer ◽  
Thomas E. Besser ◽  
Rowland N. Cobbold ◽  
Nigel P. French
Keyword(s):  
Escherichia Coli ◽  
Stocking Density ◽  
Preliminary Evidence ◽  
Feedlot Cattle ◽  
Escherichia Coli O157 ◽  
E Coli ◽  
Key Characteristics ◽  
Data Driven Approach ◽  
Definition Of

Supershedders have been suggested to be major drivers of transmission of Escherichia coli O157:H7 ( E. coli O157:H7) among cattle in feedlot environments, despite our relatively limited knowledge of the processes that govern periods of high shedding within an individual animal. In this study, we attempt a data-driven approach, estimating the key characteristics of high shedding behaviour, including effects on transmission to other animals, directly from a study of natural E. coli O157:H7 infection of cattle in a research feedlot, in order to develop an evidence-based definition of supershedding. In contrast to the hypothesized role of supershedders, we found that high shedding individuals only modestly increased the risk of transmission: individuals shedding over 10 3 cfu g −1 faeces were estimated to pose a risk of transmission only 2.45 times greater than those shedding below that level. The data suggested that shedding above 10 3 cfu g −1 faeces was the most appropriate definition of supershedding behaviour and under this definition supershedding was surprisingly common, with an estimated prevalence of 31.3% in colonized individuals. We found no evidence that environmental contamination by faeces of shedding cattle contributed to transmission over timescales longer than 3 days and preliminary evidence that higher stocking density increased the risk of transmission.

The genetic and physical basis of variability in Escherichia coli strains carrying a reference Inc N group plasmid

1981 ◽  
Vol 27 (6) ◽  
pp. 616-626 ◽  
Author(s):  
M. Konarska-Kozlowska ◽  
V. N. Iyer
Keyword(s):  
Escherichia Coli ◽  
Molecular Weight ◽  
Sequence Homology ◽  
Dna Hybridization ◽  
Tetracycline Resistance ◽  
Resistance Marker ◽  
E Coli ◽  
Reference Plasmid ◽  
Dna Fragment ◽  
K 12

The nature and basis of variability in the conjugational behaviour of RM98+ (RM98-carrying) strains of Escherichia coli K-12 that are otherwise similar in phenotype was studied. An explanation for such variability is provided.Some RM98+ strains of E. coli have a plasmid aggregate, which upon conjugation yields two different conjugative plasmids. The first (pCU1) is an N conjugative group plasmid by all available criteria. The second (pCU2) could not be placed in any conjugative group known among the Enterobacteriaceae. Reciprocal DNA hybridization experiments and the gel patterns displayed by the two plasmid DNAs upon digestion with different restriction endonucleases indicate no extensive sequence homology between pCU1 and pCU2. pCU2 DNA is much longer than pCU1 DNA.Despite the absence of extensive homology, the DNA of pCU1 and pCU2 can interact. Derivatives can be selected that have all the antibiotic markers of the aggregate plasmid but that neither contain nor segregate pCU2. It is shown that in such strains a DNA fragment of molecular weight 7.9 × 106 has been added to pCU1 concurrently with a tetracycline resistance marker originally present in pCU2 and absent in pCU1. These observations suggest that tetracycline resistance in pCU2 may be part of a large translocatable element.RM98 has been used to designate a reference Inc N group plasmid. The results presented indicate that this can lead to ambiguity. pCU1 would now be the appropriate reference plasmid.

scholarly journals Prospective study of verocytotoxin–producing, enteroaggregative and diffusely adherentEscherichia coliin different diarrhoeal states

1994 ◽  
Vol 112 (1) ◽  
pp. 63-67 ◽  
Author(s):  
M. G. Brook ◽  
H. R. Smith ◽  
B. A. Bannister ◽  
M. McConnell ◽  
H. Chart ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Inflammatory Bowel Disease ◽  
Dna Hybridization ◽  
Enteric Pathogen ◽  
Medical Patients ◽  
E Coli ◽  
Medical Control ◽  
Inflammatory Bowel ◽  
Stool Specimens ◽  
O 157

SummaryOne hundred and eighty–one stool specimens from patients with various types of diarrhoea (135 patients) or from non-diarrhoeal controls (23 acute medical patients, 23 inflammatory bowel disease in remission) were investigated using a colony–blot DNA hybridization assay for the presence of Verocytotoxin–producing (VTEC), enteroaggregative (EAggEC) and diffusely adherent (DAEC)Escherichia coli. Twelve patients had probe–positive EAggEC in the stool and 8 of these had diarrhoea, 6 following recent travel. Eight patients had DAEC, 7 of whom had travellers diarrhoea. Six of 10 (60%) travellers with gastroenteritis, but without a recognized enteric pathogen, were positive for EAggEC (4) or DAEC (2). Five of 10 (50%) travellers with gastroenteritis related to a recognized enteric pathogen also had DAEC identified in their stool. Of the 23 acute medical control patients 11 had been abroad, 4 of these were immigrants and had EAggEC. VTEC were not found and, with one exception, immunoassays for antibodies toE. coliO 157 and O 2 lipopolysaccharides were negative.

scholarly journals Role of the Escherichia coli glgX Gene in Glycogen Metabolism

2005 ◽  
Vol 187 (4) ◽  
pp. 1465-1473 ◽  
Author(s):  
David Dauvillée ◽  
Isabelle S. Kinderf ◽  
Zhongyi Li ◽  
Behjat Kosar-Hashemi ◽  
Michael S. Samuel ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Glycogen Synthesis ◽  
High Specificity ◽  
Glycogen Metabolism ◽  
Futile Cycle ◽  
E Coli ◽  
Debranching Enzymes ◽  
Genes Encoding ◽  
Definition Of

ABSTRACT A role for the Escherichia coli glgX gene in bacterial glycogen synthesis and/or degradation has been inferred from the sequence homology between the glgX gene and the genes encoding isoamylase-type debranching enzymes; however, experimental evidence or definition of the role of the gene has been lacking. Construction of E. coli strains with defined deletions in the glgX gene is reported here. The results show that the GlgX gene encodes an isoamylase-type debranching enzyme with high specificity for hydrolysis of chains consisting of three or four glucose residues. This specificity ensures that GlgX does not generate an extensive futile cycle during glycogen synthesis in which chains with more than four glucose residues are transferred by the branching enzyme. Disruption of glgX leads to overproduction of glycogen containing short external chains. These results suggest that the GlgX protein is predominantly involved in glycogen catabolism by selectively debranching the polysaccharide outer chains that were previously recessed by glycogen phosphorylase.

scholarly journals No evidence for a bovine mastitis Escherichia coli pathotype

2016 ◽  
Author(s):  
Andreas Leimbach ◽  
Anja Poehlein ◽  
John Vollmers ◽  
Dennis Göerlich ◽  
Rolf Daniel ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Bovine Mastitis ◽  
Gene Families ◽  
Opportunistic Pathogens ◽  
Gastrointestinal Microbiota ◽  
E Coli ◽  
History Of ◽  
Definition Of ◽  
Selection Of

AbstractBackgroundEscherichia coli bovine mastitis is a disease of significant economic importance in the dairy industry. Molecular characterization of mastitis-associated E. coli (MAEC) did not result in the identification of common traits. Nevertheless, a mammary pathogenic E. coli (MPEC) pathotype has been proposed suggesting virulence traits that differentiate MAEC from commensal E. coli. The present study was designed to investigate the MPEC pathotype hypothesis by comparing the genomes of MAEC and commensal bovine E. coli.ResultsWe sequenced the genomes of eight E. coli isolated from bovine mastitis cases and six fecal commensal isolates from udder-healthy cows. We analyzed the phylogenetic history of bovine E. coli genomes by supplementing this strain panel with eleven bovine-associated E. coli from public databases. The majority of the isolates originate from phylogroups A and B1, but neither MAEC nor commensal strains could be unambiguously distinguished by phylogenetic lineage. The gene content of both MAEC and commensal strains is highly diverse and dominated by their phylogenetic background. Although individual strains carry some typical E. coli virulence-associated genes, no traits important for pathogenicity could be specifically attributed to MAEC. Instead, both commensal strains and MAEC have very few gene families enriched in either pathotype. Only the aerobactin siderophore gene cluster was enriched in commensal E. coli within our strain panel.ConclusionsThis is the first characterization of a phylogenetically diverse strain panel including several MAEC and commensal isolates. With our comparative genomics approach we could not confirm previous studies that argue for a positive selection of specific traits enabling MAEC to elicit bovine mastitis. Instead, MAEC are facultative and opportunistic pathogens recruited from the highly diverse bovine gastrointestinal microbiota. Virulence-associated genes implicated in mastitis are a by-product of commensalism with the primary function to enhance fitness in the bovine gastrointestinal tract. Therefore, we put the definition of the MPEC pathotype into question and suggest to designate corresponding isolates as MAEC.

scholarly journals Understanding the transmission dynamics of Escherichia coli O157:H7 super-shedding infections in feedlot cattle

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e12524
Author(s):  
Elizabeth M. Antaki-Zukoski ◽  
Xunde Li ◽  
Bruce Hoar ◽  
John M. Adaska ◽  
Barbara A. Byrne ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Feedlot Cattle ◽  
Daily Maximum ◽  
High Dose ◽  
Post Inoculation ◽  
Fecal Samples ◽  
E Coli ◽  
High Concentrations ◽  
One Year ◽  
Definition Of

Background The presence of Escherichia coli O157:H7 (E. coli O157:H7) super-shedding cattle in feedlots has the potential to increase the overall number (bio-burden) of E. coli O157:H7 in the environment. It is important to identify factors to reduce the bio-burden of E. coli O157 in feedlots by clarifying practices associated with the occurrence of super-shedders in feedlot cattle. Methods The objective of this study is to (1) identify host, pathogen, and management risk factors associated with naturally infected feedlot cattle excreting high concentrations of E. coli O157:H7 in their feces and (2) to determine whether the ingested dose or the specific strain of E. coli O157:H7 influences a super-shedder infection within experimentally inoculated feedlot cattle. To address this, (1) pen floor fecal samples and herd parameters were collected from four feedlots over a 9-month period, then (2) 6 strains of E. coli O157:H7, 3 strains isolated from normal shedder steers and 3 strains isolated from super-shedder steers, were inoculated into 30 one-year-old feedlot steers. Five steers were assigned to each E. coli O157:H7 strain group and inoculated with targeted numbers of 102, 104, 106, 108, and 1010 CFU of bacteria respectively. Results In the feedlots, prevalence of infection with E. coli O157:H7 for the 890 fecal samples collected was 22.4%, with individual pen prevalence ranging from 0% to 90% and individual feedlot prevalence ranging from 8.4% to 30.2%. Three samples had E. coli O157:H7 levels greater than 104 MPN/g feces, thereby meeting the definition of super-shedder. Lower body weight at entry to the feedlot and higher daily maximum ambient temperature were associated with increased odds of a sample testing positive for E. coli O157:H7. In the experimental inoculation trial, the duration and total environmental shedding load of E. coli O157:H7 suggests that the time post-inoculation and the dose of inoculated E. coli O157:H7 are important while the E. coli O157:H7 strain and shedding characteristic (normal or super-shedder) are not. Discussion Under the conditions of this experiment, super-shedding appears to be the result of cattle ingesting a high dose of any strain of E. coli O157:H7. Therefore strategies that minimize exposure to large numbers of E. coli O157:H7 should be beneficial against the super-shedding of E. coli O157:H7 in feedlots.

scholarly journals Temporal Shedding Patterns and Virulence Factors of Escherichia coli Serogroups O26, O103, O111, O145, and O157 in a Cohort of Beef Calves and Their Dams

2004 ◽  
Vol 70 (3) ◽  
pp. 1708-1716 ◽  
Author(s):  
M. C. Pearce ◽  
C. Jenkins ◽  
L. Vali ◽  
A. W. Smith ◽  
H. I. Knight ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Dna Hybridization ◽  
Gel Electrophoresis ◽  
Temporal Pattern ◽  
Immunomagnetic Separation ◽  
Pulsed Field Gel Electrophoresis ◽  
Beef Calves ◽  
E Coli ◽  
First Time ◽  
The Relationship

ABSTRACT This study investigated the shedding of Escherichia coli O26, O103, O111, O145, and O157 in a cohort of beef calves from birth over a 5-month period and assessed the relationship between shedding in calves and shedding in their dams, the relationship between shedding and scouring in calves, and the effect of housing on shedding in calves. Fecal samples were tested by immunomagnetic separation and by PCR and DNA hybridization assays. E. coli O26 was shed by 94% of calves. Over 90% of E. coli O26 isolates carried the vtx 1, eae, and ehl genes, 6.5% carried vtx 1 and vtx 2, and one isolate carried vtx 2 only. Serogroup O26 isolates comprised seven pulsed-field gel electrophoresis (PFGE) patterns but were dominated by one pattern which represented 85.7% of isolates. E. coli O103 was shed by 51% of calves. Forty-eight percent of E. coli O103 isolates carried eae and ehl, 2% carried vtx 2, and none carried vtx 1. Serogroup O103 isolates comprised 10 PFGE patterns and were dominated by two patterns representing 62.5% of isolates. Shedding of E. coli O145 and O157 was rare. All serogroup O145 isolates carried eae, but none carried vtx 1 or vtx 2. All but one serogroup O157 isolate carried vtx 2, eae, and ehl. E. coli O111 was not detected. In most calves, the temporal pattern of E. coli O26 and O103 shedding was random. E. coli O26 was detected in three times as many samples as E. coli O103, and the rate at which calves began shedding E. coli O26 for the first time was five times greater than that for E. coli O103. For E. coli O26, O103, and O157, there was no association between shedding by calves and shedding by dams within 1 week of birth. For E. coli O26 and O103, there was no association between shedding and scouring, and there was no significant change in shedding following housing.

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