Nitrate-reductase electron-transport cofactors in Veillonella alcalescens

1977 ◽  
Vol 23 (11) ◽  
pp. 1562-1567 ◽  
Author(s):  
K. L. Ruoff ◽  
E. A. Delwiche
Keyword(s):  
Electron Transport ◽  
Nitrate Reductase ◽  
Growth Medium ◽  
Doubling Time ◽  
Growth Yield ◽  
Heme Iron ◽  
Deficient Mutant ◽  
Non Heme Iron ◽  
Reducing Activity

Studies on the effects of inhibitors of the nitrate-reducing activity of Veillonella alcalescens extracts suggest the participation of a naphthoquinone, a b-type cytochrome, and non-heme iron in electron transport to nitrate. A nitrate-reductase-deficient mutant displayed a longer doubling time and a decreased molar growth yield on nitrate media. This mutant was phenotypically restored by the addition of molybdate to the growth medium, giving evidence for the functioning of molybdenum in the nitrate-reductase enzyme of V. alcalescens.

scholarly journals Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center

PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0162031 ◽  
Author(s):  
Wayne K. Dawson ◽  
Ryota Jono ◽  
Tohru Terada ◽  
Kentaro Shimizu
Keyword(s):  
Electron Transport ◽  
Long Range ◽  
Heme Iron ◽  
Non Heme Iron ◽  
Iron Center

scholarly journals Nitrate reductase from the magnetotactic bacteriumMagnetospirillum magnetotacticumMS-1: purification and sequence analyses

2003 ◽  
Vol 49 (3) ◽  
pp. 197-206 ◽  
Author(s):  
Azuma Taoka ◽  
Katsuhiko Yoshimatsu ◽  
Masaaki Kanemori ◽  
Yoshihiro Fukumori
Keyword(s):  
Nitrate Reductase ◽  
Gene Cluster ◽  
Phylogenetic Analyses ◽  
Regulatory Protein ◽  
Heme Iron ◽  
Open Reading Frames ◽  
Non Heme Iron ◽  
Close Relationship ◽  
Paracoccus Pantotrophus ◽  
Magnetospirillum Magnetotacticum

We purified the nitrate reductase from the soluble fraction of Magnetospirillum magnetotacticum MS-1. The enzyme was composed of 86- and 17-kDa subunits and contained molybdenum, non-heme iron, and heme c. These properties are very similar to those of the periplasmic nitrate reductase found in Paracoccus pantotrophus. The M. magnetotacticum nap locus was clustered in seven open reading frames, napFDAGHBC. The phylogenetic analyses of NapA, NapB, and NapC suggested a close relationship between M. magnetotacticum nap genes and Escherichia coli nap genes, which is not consistent with the 16S rDNA data. This is the first finding that the α subclass of Proteobacteria possesses a napFDAGHBC-type nap gene cluster. The nap gene cluster had putative fumarate and nitrate reduction regulatory protein (Fnr) and NarL protein binding sites. Furthermore, we investigated the effect of molybdate deficiency in medium on the total iron content of the magnetosome fraction and discussed the physiological function of nitrate reductase in relation to the magnetite synthesis in M. magnetotacticum.Key words: nitrate reductase, magnetotactic bacteria, denitrification, horizontal gene transfer.

PARTICULATE DIHYDROOROTATE OXIDASE SYSTEM FROM A PSEUDOMONAD: LINKAGE WITH THE RESPIRATORY CHAIN

1967 ◽  
Vol 45 (9) ◽  
pp. 1283-1294 ◽  
Author(s):  
Richard W. Miller ◽  
Carolyn T. Kerr
Keyword(s):  
Electron Transport ◽  
Cytochrome C ◽  
Respiratory Chain ◽  
Heme Iron ◽  
Primary Site ◽  
Electron Acceptors ◽  
Stopped Flow ◽  
Oxidase System ◽  
Respiratory Inhibitors ◽  
Non Heme Iron

A particulate dihydroorotate oxidase system was prepared from a soil pseudomonad. Components of the respiratory chain participating in electron transport from dihydroorotate to molecular oxygen are bound non-heme iron, ubiquinone, cytochromes b and c, and cytochrome oxidase. Alternate pathways to oxygen are also operative. Inhibition by conventional respiratory inhibitors was incomplete. Dyes and added cytochrome c were readily reduced by dihydroorotate. Pyridine–adenine dinucleotide coenzymes were not reduced by the substrate. However, oxidase activities for these cofactors may have prevented any net reduction. The primary site of reaction with dihydroorotate probably consists of a dehydrogenase which is linked to the respiratory chain and is reactive with various dyes.In the absence of external electron acceptors or inhibitors, 0.5 mole of oxygen was consumed per mole of dihydroorotate oxidized. The anaerobic rate of reduction of bound cytochrome c, as studied by the stopped–flow technique, was slower than the maximum initial rates of orotate production.

Strongly Coupled Redox-Linked Conformational Switching at the Active Site of the Non-Heme Iron-Dependent Dioxygenase, TauD

2019 ◽  
Author(s):  
Christopher John ◽  
Greg M. Swain ◽  
Robert P. Hausinger ◽  
Denis A. Proshlyakov
Keyword(s):  
Active Site ◽  
Structural Model ◽  
Heme Iron ◽  
Chemical Transformations ◽  
Experimental Conditions ◽  
Strongly Coupled ◽  
Non Heme Iron ◽  
Reversible Redox ◽  
Wide Range ◽  
Complex Structural

2-Oxoglutarate (2OG)-dependent dioxygenases catalyze C-H activation while performing a wide range of chemical transformations. In contrast to their heme analogues, non-heme iron centers afford greater structural flexibility with important implications for their diverse catalytic mechanisms. We characterize an <i>in situ</i> structural model of the putative transient ferric intermediate of 2OG:taurine dioxygenase (TauD) by using a combination of spectroelectrochemical and semi-empirical computational methods, demonstrating that the Fe (III/II) transition involves a substantial, fully reversible, redox-linked conformational change at the active site. This rearrangement alters the apparent redox potential of the active site between -127 mV for reduction of the ferric state and 171 mV for oxidation of the ferrous state of the 2OG-Fe-TauD complex. Structural perturbations exhibit limited sensitivity to mediator concentrations and potential pulse duration. Similar changes were observed in the Fe-TauD and taurine-2OG-Fe-TauD complexes, thus attributing the reorganization to the protein moiety rather than the cosubstrates. Redox difference infrared spectra indicate a reorganization of the protein backbone in addition to the involvement of carboxylate and histidine ligands. Quantitative modeling of the transient redox response using two alternative reaction schemes across a variety of experimental conditions strongly supports the proposal for intrinsic protein reorganization as the origin of the experimental observations.

Plant carotenoid cleavage oxygenases: structure–function relationships and role in development and metabolism

2019 ◽  
Vol 19 (1) ◽  
pp. 1-9 ◽  
Author(s):  
Manoj Kumar Dhar ◽  
Sonal Mishra ◽  
Archana Bhat ◽  
Sudha Chib ◽  
Sanjana Kaul
Keyword(s):  
Higher Plants ◽  
Domain Architecture ◽  
Heme Iron ◽  
Critical Assessment ◽  
Protein Family ◽  
Regulatory Mechanisms ◽  
Non Heme Iron ◽  
Functional Aspects ◽  
Functional Understanding ◽  
Signal Production

Abstract A plant communicates within itself and with the outside world by deploying an array of agents that include several attractants by virtue of their color and smell. In this category, the contribution of ‘carotenoids and apocarotenoids’ is very significant. Apocarotenoids, the carotenoid-derived compounds, show wide representation among organisms. Their biosynthesis occurs by oxidative cleavage of carotenoids, a high-value reaction, mediated by carotenoid cleavage oxygenases or carotenoid cleavage dioxygenases (CCDs)—a family of non-heme iron enzymes. Structurally, this protein family displays wide diversity but is limited in its distribution among plants. Functionally, this protein family has been recognized to offer a role in phytohormones, volatiles and signal production. Further, their wide presence and clade-specific functional disparity demands a comprehensive account. This review focuses on the critical assessment of CCDs of higher plants, describing recent progress in their functional aspects and regulatory mechanisms, domain architecture, classification and localization. The work also highlights the relevant discussion for further exploration of this multi-prospective protein family for the betterment of its functional understanding and improvement of crops.

scholarly journals Activation modes in biocatalytic radical cyclization reactions

2021 ◽  
Author(s):  
Yuxuan Ye ◽  
Haigen Fu ◽  
Todd K Hyster
Keyword(s):  
Heme Iron ◽  
Radical Cyclization ◽  
Cytochrome P450 Monooxygenases ◽  
Radical Cyclizations ◽  
Cyclization Reactions ◽  
Complex Molecules ◽  
P450 Monooxygenases ◽  
Non Heme Iron ◽  
Essential Reactions ◽  
Isopenicillin N

Abstract Radical cyclizations are essential reactions in the biosynthesis of secondary metabolites and the chemical synthesis of societally valuable molecules. In this review, we highlight the general mechanisms utilized in biocatalytic radical cyclizations. We specifically highlight cytochrome P450 monooxygenases (P450s) involved in the biosynthesis of mycocyclosin and vancomycin, non-heme iron- and α-ketoglutarate-dependent dioxygenases (Fe/αKGDs) used in the biosynthesis of kainic acid, scopolamine, and isopenicillin N, and radical S-adenosylmethionine (SAM) enzymes that facilitate the biosynthesis of oxetanocin A, menaquinone, and F420. Beyond natural mechanisms, we also examine repurposed flavin-dependent ‘ene’-reductases (ERED) for non-natural radical cyclization. Overall, these general mechanisms underscore the opportunity for enzymes to augment and enhance the synthesis of complex molecules using radical mechanisms.

Sign in / Sign up

Export Citation Format

Share Document