Linkage group alignment from four independent Brassica oleracea RFLP maps

Genome ◽  
1998 ◽  
Vol 41 (2) ◽  
pp. 226-235 ◽  
Author(s):  
J Hu ◽  
J Sadowski ◽  
T C Osborn ◽  
B S Landry ◽  
C F Quiros
Keyword(s):  
Linkage Group ◽  
Brassica Oleracea ◽  
Linkage Maps ◽  
Linkage Groups ◽  
Clubroot Resistance ◽  
C Genome ◽  
Sequence Rearrangement ◽  
Duplicated Loci ◽  
Chromosome Segments ◽  
Mapping Populations

A Brassica oleracea linkage map was constructed from an F2 population of 69 individuals with sequences previously mapped independently in three linkage maps of this species. These were the maps published by Kianian and Quiros (1992), Landry et al. (1992), and Camargo et al. (1997). The base map developed in this study consisted of 167 RFLP loci in nine linkage groups, plus eight markers in four linkage pairs, covering 1738 cM. Linkage group alignment was also possible with a fourth map published by Ramsay et al. (1996), that contained loci in common with the map of Camargo et al. (1997). Common sequences across the mapping populations served to align most of the linkage groups of the independently developed maps. In general, consistent linear order among markers was maintained, although often the distances between markers varied from map to map. A linkage group in the map of Landry et al. carrying a clubroot resistance QTL and consisting of markers from two other linkage groups, was found to be rearranged. This was not surprising, considering that the resistance gene was introgressed from Brassica napus. The extensively duplicated nature of the C genome was revealed by 19 sequences detecting duplicated loci within chromosomes and 17 sequences detecting duplicated loci between chromosomes. The variation in mapping distances between linked loci pairs on different chromosomes demonstrated that sequence rearrangement is a distinct feature of this genome. Although the consolidation of all linkage groups in the four B. oleracea maps compared was not possible, the present work served to add a considerable number of markers to corresponding linkage groups. Some of the chromosome segments in particular, were enriched with many markers that may be useful for future gene tagging or cloning. It will be possible in the future to complete the consolidation of all four maps as new loci are added to each map.Key words: cole crops, Cruciferae, molecular markers, linkage maps.

Integration of the Cytogenetic and Genetic Linkage Maps of Brassica oleracea

Genetics ◽  
2002 ◽  
Vol 161 (3) ◽  
pp. 1225-1234 ◽  
Author(s):  
Elaine C Howell ◽  
Guy C Barker ◽  
Gareth H Jones ◽  
Michael J Kearsey ◽  
Graham J King ◽  
...  
Keyword(s):  
Linkage Map ◽  
Brassica Oleracea ◽  
Genetic Map ◽  
Genetic Linkage ◽  
Linkage Maps ◽  
Linkage Groups ◽  
Opposite Orientation ◽  
Cytogenetic Map ◽  
Specific Pcr ◽  
Genetic Linkage Maps

Abstract We have assigned all nine linkage groups of a Brassica oleracea genetic map to each of the nine chromosomes of the karyotype derived from mitotic metaphase spreads of the B. oleracea var. alboglabra line A12DHd using FISH. The majority of probes were BACs, with A12DHd DNA inserts, which give clear, reliable FISH signals. We have added nine markers to the existing integrated linkage map, distributed over six linkage groups. BACs were definitively assigned to linkage map positions through development of locus-specific PCR assays. Integration of the cytogenetic and genetic linkage maps was achieved with 22 probes representing 19 loci. Four chromosomes (2, 4, 7, and 9) are in the same orientation as their respective linkage groups (O4, O7, O8, and O6) whereas four chromosomes (1, 3, 5, and 8) and linkage groups (O3, O9, O2, and O1) are in the opposite orientation. The remaining chromosome (6) is probably in the opposite orientation. The cytogenetic map is an important resource for locating probes with unknown genetic map positions and is also being used to analyze the relationships between genetic and cytogenetic maps.

Integration of molecular and classical linkage groups of the silkworm, Bombyx mori (n = 28)

Genome ◽  
2005 ◽  
Vol 48 (4) ◽  
pp. 626-629 ◽  
Author(s):  
Yuji Yasukochi ◽  
Yutaka Banno ◽  
Kohji Yamamoto ◽  
Marian R Goldsmith ◽  
Hiroshi Fujii
Keyword(s):  
Molecular Markers ◽  
Linkage Group ◽  
Linkage Analysis ◽  
Linkage Map ◽  
Bombyx Mori ◽  
Linkage Maps ◽  
Wild Type ◽  
Linkage Groups ◽  
Sequence Tagged Sites ◽  
Silkworm Bombyx Mori

Previously published linkage groups (LGs) composed of molecular markers were assigned to classical LGs in the silkworm, Bombyx mori (n = 28). Four markers from the classical linkage map, og, w-1, Lp, and Pfl, were assigned to the molecular linkage maps using sequence tagged sites. In addition, linkage analysis was carried out using BF1 progeny between wild-type and mutant stocks carrying morphological phenotypic markers. As a result, the counterparts for 26 of 28 molecular LGs were identified with their counterparts of the classical LGs. Two visible markers, Sel and Xan, representing different classical LGs, were found to be linked.Key words: Bombyx mori, classical linkage group (LG), PCR-based genotyping, mutant, STS.

scholarly journals A Composite Genetic Map of the Parasitoid Wasp Trichogramma brassicae Based on RAPD Markers

Genetics ◽  
1998 ◽  
Vol 150 (1) ◽  
pp. 275-282 ◽  
Author(s):  
Valérie Laurent ◽  
Eric Wajnberg ◽  
Brigitte Mangin ◽  
Thomas Schiex ◽  
Christine Gaspin ◽  
...  
Keyword(s):  
Dna Markers ◽  
Rapd Markers ◽  
Random Amplified Polymorphic Dna ◽  
Parasitoid Wasp ◽  
Linkage Maps ◽  
Linkage Groups ◽  
Trichogramma Brassicae ◽  
Haploid Male ◽  
The Mean ◽  
Mapping Populations

Abstract Three linkage maps of the genome of the microhymenopteran Trichogramma brassicae were constructed from the analysis of segregation of random amplified polymorphic DNA markers in three F2 populations. These populations were composed of the haploid male progeny of several virgin F1 females, which resulted from the breeding of four parental lines that were nearly fixed for different random amplified polymorphic DNA markers and that were polymorphic for longevity and fecundity characters. As the order of markers common to the three mapping populations was found to be well conserved, a composite linkage map was constructed. Eighty-four markers were organized into five linkage groups and two pairs. The mean interval between two markers was 17.7 cM, and the map spanned 1330 cM.

scholarly journals Identification and Mapping of Markers Linked to the Mi Gene for Root-knot Nematode Resistance in Peach

2005 ◽  
Vol 130 (1) ◽  
pp. 24-33 ◽  
Author(s):  
Anne M. Gillen ◽  
Fred A. Bliss
Keyword(s):  
Linkage Group ◽  
Prunus Persica ◽  
Random Amplified Polymorphic Dna ◽  
Rapd Marker ◽  
Nematode Resistance ◽  
Linkage Maps ◽  
Linkage Groups ◽  
Root Knot Nematode ◽  
Repulsion Phase ◽  
Group 2

An F2 population from a single F1 plant from the cross of peach [Prunus persica (L.) Batsch] rootstock cultivars Harrow Blood (HB) × Okinawa (Oki) was used to locate the Mi locus, which conditions resistance to Meloidogyne incognita (race 1) (Kofoid and White) Chitwood. These data and comparison of common markers among published genetic linkage maps placed the Mi locus on Prunus L. linkage group 2. Two restriction fragment length polymorphisms (RFLPs) [linked at 4.8 and 6.8 centimorgan (cM), repulsion phase] and one random amplified polymorphic DNA (RAPD) marker (linked at 9.5 cM, coupling phase) were linked to Mi. The RAPD marker was cloned, sequenced, and converted to a polymerase chain reaction (PCR)-based cleaved amplified polymorphic sequence (CAPs) marker. Clones of resistance gene analogs (RGA) developed from Oki were highly polymorphic when used as RFLP probes. The RGA's mapped to four linkage groups but clustered on two of the four linkage groups, providing limited coverage of the genome. Even so, they may be useful as markers for disease resistance genes that occur in other populations. The linkage maps of the HB × Oki F2 population and a peach × almond (Prunus amygdalus Batsch) F2 population were colinear in certain regions, however, a significant number of markers mapped to different linkage groups among the two populations. The locus for the blood-flesh trait (red-violet mesocarp) mapped to the top of linkage group 4.

Potential of the C Genome of Different Variants of Brassica oleracea for the Improvement of Agronomic and Seed Quality Traits of B. napus Canola

Crop Science ◽  
2019 ◽  
Vol 59 (6) ◽  
pp. 2608-2620 ◽  
Author(s):  
Azam Nikzad ◽  
Berisso Kebede ◽  
Jaime Pinzon ◽  
Jani Bhavikkumar ◽  
Rong-Cai Yang ◽  
...  
Keyword(s):  
Brassica Oleracea ◽  
Seed Quality ◽  
Quality Traits ◽  
C Genome ◽  
Seed Quality Traits

Linkage group XIX of Chlamydomonas reinhardtii has a linear map.

Genetics ◽  
1993 ◽  
Vol 133 (4) ◽  
pp. 865-874
Author(s):  
J A Holmes ◽  
D E Johnson ◽  
S K Dutcher
Keyword(s):  
Linkage Group ◽  
Chlamydomonas Reinhardtii ◽  
Mutant Strain ◽  
Meiotic Recombination ◽  
Temperature Sensitive ◽  
Unusual Property ◽  
Linkage Groups ◽  
Excess Number ◽  
Chiasma Interference ◽  
Double Crossovers

Abstract Linkage group XIX (or the UNI linkage group) of Chlamydomonas reinhardtii has been reported to show a circular meiotic recombination map. A circular map predicts the existence of strong chiasma and chromatid interference, which would lead to an excess number of two-strand double crossovers during meiosis. We have tested this prediction in multipoint crosses. Our results are consistent with a linear linkage group that shows positive chiasma interference and no chromatid interference. Chiasma interference occurs both within arms and across the centromere. Of the original loci that contributed to the circular map, we find that two map to other linkage groups and a third cannot be retested because the mutant strain that defined it has been lost. A second reported unusual property for linkage group XIX was the increase in meiotic recombination with increases in temperature during a period that precedes the onset of meiosis. Although we observed changes in recombination frequencies in some intervals on linkage group XIX in crosses to CC-1952, and in strains heterozygous for the mutation ger1 at 16 degrees, we also show that our strains do not exhibit the previously observed patterns of temperature-sensitive recombination for two different pairs of loci on linkage group XIX. We conclude that linkage group XIX has a linear genetic map that is not significantly different from other Chlamydomonas linkage groups.

Identification of RAPD markers linked to common bacterial blight resistance genes in Phaseolus vulgaris L.

Genome ◽  
1997 ◽  
Vol 40 (4) ◽  
pp. 544-551 ◽  
Author(s):  
Yonghe Bai ◽  
T. E. Michaels ◽  
K. P. Pauls
Keyword(s):  
Phaseolus Vulgaris ◽  
Linkage Group ◽  
Bacterial Blight ◽  
Rapd Markers ◽  
Interspecific Cross ◽  
Breeding Population ◽  
Common Bacterial Blight ◽  
Linkage Groups ◽  
Phaseolus Vulgaris L ◽  
Total Contribution

Seven hundred and fifty-six random primers were screened with bulks of genomic DNA from common bacterial blight (CBB) resistant and susceptible bean plants. The plants were from a breeding population derived from an interspecific cross between Phaseolus acutifolius and Phaseolus vulgaris. Four RAPD markers, named R7313, RE416, RE49, and R4865, were found to be significantly associated with CBB resistance in this population. Forty-nine molecular markers segregating in the population were clustered into 8 linkage groups by a MAPMAKER linkage analysis. The largest linkage group was 140 cM long and contained 25 marker loci, including marker R4865. Markers R7313, RE416, and RE49 were clustered on another linkage group. A regression analysis indicated that the markers in these two groups together accounted for 81% of the variation in CBB resistance in the population. The addition of another marker, M56810, which was not individually associated with CBB resistance, increased the total contribution to the trait to 87%.Key words: Phaseolus vulgaris L., common bacterial blight (CBB), polymerase chain reaction (PCR), RAPD markers, linkage groups.

The "reindeer" mutation and a revision of linkage groups V and X in the flour beetle, Tribolium castaneum

1984 ◽  
Vol 26 (6) ◽  
pp. 762-764 ◽  
Author(s):  
Peter S. Dawson
Keyword(s):  
Linkage Group ◽  
Key Words ◽  
Tribolium Castaneum ◽  
Linkage Groups ◽  
Dominant Mutation ◽  
Genetic Studies ◽  
Group V ◽  
Flour Beetle ◽  
Dominant Mutants

Reindeer (Rd) is a dominant mutation affecting antenna morphology in the tenebrionid flour beetle, Tribolium castaneum. In contrast with most dominant mutants previously described for this species, homozygotes are fully viable, thus making Rd very useful for genetic studies. Rd is tentatively assigned to either linkage group IX or X. Abbreviated appendages (aa), formerly placed in linkage group X, is reassigned to linkage group V on the basis of demonstrated linkage to jet (j).Key words: Tribolium, mutation Rd, linkage, antenna morphology.

scholarly journals GENETICS OF ISOZYMES AND ANALYSIS OF ISOZYMES LINKAGE AND MORPHOLOGICAL LOCI IN SUNFLOWER (Helianthus annuus L.) / GENETICA DE ISOFERMENTOS Y EL ACOMPLAMIENTO DE LÓCUSES MORFOLOGICOS E ISOFERMENTICOS EN GIRASOL / GENETIQUE DES ISOFERMENTS ET LIAISON DES LOCUS MORPHOLOGIQUES ET CEUX-CI D’ISOFERMENTS AU TOURNESOL

Helia ◽  
2000 ◽  
Vol 23 (33) ◽  
pp. 65-76
Author(s):  
V.V. Kirichenko ◽  
V.N. Popov
Keyword(s):  
Acid Phosphatase ◽  
Linkage Group ◽  
Helianthus Annuus ◽  
Malate Dehydrogenase ◽  
Morphological Traits ◽  
Fertility Restoration ◽  
Linkage Groups ◽  
Esterase Loci ◽  
Mature Seeds ◽  
Male Fertility Restoration

SUMMARY The genetics of anodal esterase (Est), cathodal esterase (cEst), cathodal acid phosphatase (cAcp) and malate dehydrogenase (Mdh) has been studied in mature seeds and leaves (genetics of cAcp and Mdh has not been studied in leaves) of sunflower (Helianthus annuus L.). A total of ten loci (four loci of anodal esterase, two loci of cathodal esterase, three loci of malate dehydrogenase and one locus of cathodal acid phosphatase) have been identified and described. Five esterase loci (Est1, Est2, Est3, Est4, cEst5), three malate dehydrogenase loci and one locus of cathodal acid phosphatase are expressed in seeds. Three esterase loci (Est2, cEst5 and cEst6) are expressed in leaves. The analysis of linkage between these loci has been made. Two linkage groups have been found. The sequence of the loci in the first linkage group was Mdh2-Est1- Est2-Est3-cEst5. In the second linkage group it was Est4-cAcp1. Linkages have been analyzed between three isoenzymatic loci expressed in leaves and between two loci controlling morphological traits (branched stem and male fertility restoration). The linkage between morphological traits and isoenzymatic loci has not been revealed. It has been revealed in Br-Rf pair.

Genetic Linkage Maps of the Guppy ( Poecilia reticulata ): Assignment of RAPD Markers to Multipoint Linkage Groups

2003 ◽  
Vol 5 (3) ◽  
pp. 279-293 ◽  
Author(s):  
Gideon Khoo ◽  
Meng Huat Lim ◽  
Haridas Suresh ◽  
Damien K. Y. Gan ◽  
Kok Fang Lim ◽  
...  
Keyword(s):  
Genetic Linkage ◽  
Rapd Markers ◽  
Poecilia Reticulata ◽  
Linkage Maps ◽  
Linkage Groups ◽  
Multipoint Linkage ◽  
Genetic Linkage Maps
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