Analysis of tetraploid Elymus species using wheat microsatellite markers and RAPD markers

Genome ◽  
1997 ◽  
Vol 40 (6) ◽  
pp. 806-814 ◽  
Author(s):  
Gen-Lou Sun ◽  
Björn Salomon ◽  
Roland von Bothmer

An analysis of Amplification fragment polymorphism of DNA from 27 accessions of 19 tetraploid Elymus species was carried out using 18 wheat microsatellite (WMS) primer pairs and 10 decamer primers. Ten WMS primer pairs produced multiple polymorphism on all accessions tested. Two independent phenograms, one based on WMS-PCR and one on RAPDs, separated the 19 tetraploid species into two main groups, viz., the SH genome species group and the SY genome species group. The results coincide with the genomic classification of these species and hence support previous studies showing that Elymus is not a monophyletic genus. The assays indicated that accessions within a species cluster together, which concurs with the morphological classification. Interspecific and intraspecific polymorphisms were detected by the WMS-PCR and RAPD analyses. Variation was observed among accessions of Elymus caninus. The WMS-PCR detected a much higher level of polymorphism than the RAPD analysis. WMSs seem to be more efficient markers than RAPD markers for studying the population diversity of Elymus species. The potential of cross-species amplification of microsatellite markers as an additional source for genetic analysis and applications in Elymus is discussed in the context of these results.Key words: Elymus, wheat, RAPD, phenetics, microsatellites.

Author(s):  
S. N. Bogdanov ◽  
◽  
S. Ju. Babaev ◽  
A. V. Strazhnov ◽  
A. B. Stroganov ◽  
...  

2021 ◽  
Vol 5 (2) ◽  
Author(s):  
Olivia M Gearner ◽  
Marcin J Kamiński ◽  
Kojun Kanda ◽  
Kali Swichtenberg ◽  
Aaron D Smith

Abstract Sepidiini is a speciose tribe of desert-inhabiting darkling beetles, which contains a number of poorly defined taxonomic groups and is in need of revision at all taxonomic levels. In this study, two previously unrecognized lineages were discovered, based on morphological traits, among the extremely speciose genera Psammodes Kirby, 1819 (164 species and subspecies) and Ocnodes Fåhraeus, 1870 (144 species and subspecies), namely the Psammodes spinosus species-group and Ocnodes humeralis species-group. In order to test their phylogenetic placement, a phylogeny of the tribe was reconstructed based on analyses of DNA sequences from six nonoverlapping genetic loci (CAD, wg, COI JP, COI BC, COII, and 28S) using Bayesian and maximum likelihood inference methods. The aforementioned, morphologically defined, species-groups were recovered as distinct and well-supported lineages within Molurina + Phanerotomeina and are interpreted as independent genera, respectively, Tibiocnodes Gearner & Kamiński gen. nov. and Tuberocnodes Gearner & Kamiński gen. nov. A new species, Tuberocnodes synhimboides Gearner & Kamiński sp. nov., is also described. Furthermore, as the recovered phylogenetic placement of Tibiocnodes and Tuberocnodes undermines the monophyly of Molurina and Phanerotomeina, an analysis of the available diagnostic characters for those subtribes is also performed. As a consequence, Phanerotomeina is considered as a synonym of the newly redefined Molurina sens. nov. Finally, spectrograms of vibrations produced by substrate tapping of two Molurina species, Toktokkus vialis (Burchell, 1822) and T. synhimboides, are presented.


2021 ◽  
Vol 503 (2) ◽  
pp. 1828-1846
Author(s):  
Burger Becker ◽  
Mattia Vaccari ◽  
Matthew Prescott ◽  
Trienko Grobler

ABSTRACT The morphological classification of radio sources is important to gain a full understanding of galaxy evolution processes and their relation with local environmental properties. Furthermore, the complex nature of the problem, its appeal for citizen scientists, and the large data rates generated by existing and upcoming radio telescopes combine to make the morphological classification of radio sources an ideal test case for the application of machine learning techniques. One approach that has shown great promise recently is convolutional neural networks (CNNs). Literature, however, lacks two major things when it comes to CNNs and radio galaxy morphological classification. First, a proper analysis of whether overfitting occurs when training CNNs to perform radio galaxy morphological classification using a small curated training set is needed. Secondly, a good comparative study regarding the practical applicability of the CNN architectures in literature is required. Both of these shortcomings are addressed in this paper. Multiple performance metrics are used for the latter comparative study, such as inference time, model complexity, computational complexity, and mean per class accuracy. As part of this study, we also investigate the effect that receptive field, stride length, and coverage have on recognition performance. For the sake of completeness, we also investigate the recognition performance gains that we can obtain by employing classification ensembles. A ranking system based upon recognition and computational performance is proposed. MCRGNet, Radio Galaxy Zoo, and ConvXpress (novel classifier) are the architectures that best balance computational requirements with recognition performance.


Author(s):  
Saad Elzayat ◽  
Hitham H. Elfarargy ◽  
Islam Soltan ◽  
Mona A. Abdel-Kareem ◽  
Maurizio Barbara ◽  
...  

2011 ◽  
Vol 20 (11) ◽  
pp. 1925-1935 ◽  
Author(s):  
Jung Mo Kim ◽  
Sung-Hwan Moon ◽  
Sung Geum Lee ◽  
Youn Jeong Cho ◽  
Ki Sung Hong ◽  
...  

Animals ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 2193
Author(s):  
Angelika Podbielska ◽  
Katarzyna Piórkowska ◽  
Tomasz Szmatoła

This study aimed to characterize the population structure and genetic diversity of alpacas maintained in Poland using 17 microsatellite markers recommended by the International Society for Animal Genetics. The classification of llamas, alpacas, and hybrids of both based on phenotype is often difficult due to long-term admixture. Our results showed that microsatellite markers can distinguish alpacas from llamas and provide information about the level of admixture of one species in another. Alpacas admixed with llamas constituted 8.8% of the tested individuals, with the first-generation hybrid displaying only 7.4% of llama admixture. The results showed that Poland hosts a high alpaca genetic diversity as a consequence of their mixed origin. More than 200 different alleles were identified and the average observed heterozygosity and expected heterozygosity values were 0.745 and 0.768, respectively, the average coefficient of inbreeding was 0.034, and the average polymorphism information content value was 0.741. The probability of exclusion for one parent was estimated at 0.99995 and for two parents at 0.99999.


2021 ◽  
pp. jclinpath-2021-207863
Author(s):  
Lisa N van der Vorm ◽  
Henriët A Hendriks ◽  
Simone M Smits

AimsRecently, a new automated digital cell imaging analyser (Sysmex CellaVision DC-1), intended for use in low-volume and small satellite laboratories, has become available. The purpose of this study was to compare the performance of the DC-1 with the Sysmex DI-60 system and the gold standard, manual microscopy.MethodsWhite blood cell (WBC) differential counts in 100 normal and 100 abnormal peripheral blood smears were compared between the DC-1, the DI-60 and manual microscopy to establish accuracy, within-run imprecision, clinical sensitivity and specificity. Moreover, the agreement between precharacterisation and postcharacterisation of red blood cell (RBC) morphological abnormalities was determined for the DC-1.ResultsWBC preclassification and postclassification results of the DC-1 showed good correlation compared with DI-60 results and manual microscopy. In addition, the within-run SD of the DC-1 was below 1 for all five major WBC classes, indicating good reproducibility. Clinical sensitivity and specificity were, respectively, 96.7%/95.9% compared with the DI-60% and 96.6%/95.3% compared with manual microscopy. The overall agreement on RBC morphology between the precharacterisation and postcharacterisation results ranged from 49% (poikilocytosis) to 100% (hypochromasia, microcytosis and macrocytosis).ConclusionsThe DC-1 has proven to be an accurate digital cell imaging system for differential counting and morphological classification of WBCs and RBCs in peripheral blood smears. It is a compact and easily operated instrument that can offer low-volume and small satellite laboratories the possibilities of readily available blood cell analysis that can be stored and retrieved for consultation with remote locations.


Author(s):  
Pavlova N.R. ◽  
Dzerkal V.M. ◽  
Ponomareva А.А.

In order to preserve, reproduce and effectively use the natural complexes and objects of the DniproDelta as one of the most valuable natural floodplain-littoral complexes in Europe, which have special environmental, recreational, historical and cultural, scientific, educational and aesthetic value, and ensurethe conservationof «DniproDelta»wetland of theinternational importance,the National Natural Park «Lower Dnipro»was created(Decree of the President of Ukraine of November 24, 2015 No 657/2015).The flora of the higher vascular plants of the Park contains 820 species, 40 species of which (4.9% of the total number) are woody plants. Rosaceae Juss. (14 species), Salicaceae Mirb. (7 species), Aceraceae Juss. (3 types) are leading families of the dendroflora of the Park.Biomorphological characteristics of tree plant species in the flora of the Lower Dnipro National Nature Park were carried out according to the following classifications: 1) K. Raunkiersystem of plant life forms; 2) ecological and morphological classification of life forms of I. G. Serebryakov; 3) architectural models of F. Alle, R. Oldeman and P. Tomlinson; 4) classification of the life forms of plants of the temperate zone, which takes into account the vegetative propagation by O. V. Smirnova, L. B. Zaugolnova.AnalysisoftypesofbiomorphsaccordingtotheclassificationofK. Raunkiershowedthatthevastmajorityofdendrofloraspeciesbelongtophanerophytes, amongthem, dependingontheheightoftheplant, therearedifferentgroups-megaphanerophytes(e.g., Populustremula), mesophanerophytes(Salixalba), microphaneorphytes, nanophanerophytes(Amygdalusnana) andhamephytes(Ephedradistachia).According to the ecological and morphological classification of I. G. Serebryakov life forms, the flora of the Park is dominated by forest-steppe trees and forest-type trees.The trees which belong to one life form often differ in the principles of growth and formation of the crown, branching, and general habitus, which is generally considered as an architectural model of a particular species. According to the classification of architectural models by F. Alle, R. Oldeman and P. Tomlinson, in the flora of the Park, there are five models among which the species formed by the model of Tomlinson have a significant representation, and the species formed by the models of Manzheno and Champagne have a smaller representation.Key words:flora, tree, classification, life form, bush. З метою збереження, відтворення і ефективного використання природних комплексів та об’єктів дельти річки Дніпро як одного з найцінніших природних заплавно-літоральних комплексів у Європі, які мають особливу природоохоронну, оздоровчу, історико-культурну, наукову, освітню та естетичну цінність, забезпечення збереження водно-болотного угіддя міжнародного значення «Дельта р. Дніпро» створено Національний природний парк «Нижньодніпровський» (Указ президента України від 24 листопада 2015 року No 657/2015).Флора вищих судинних рослин Парку попередньо складає 820 видів, з них 40 видів (4,9% від загальної кількості) –деревні рослини.Провідні родини дендрофлори Парку –Rosaceae Juss. (14 видів), SalicaceaeMirb. (7 видів), AceraceaeJuss. (3 види). Біоморфологічну характеристику видів деревних рослин у флорі національного природнього парку «Нижньодніпровський» проведено за класифікаціями: 1) система життєвих форм рослин К. Раункієра; 2) еколого-морфологічна класифікація життєвих форм І. Г. Сєрєбрякова; 3) архітектурні моделі Ф. Аллє, Р. Ольдемана і П. Томлінсона; 4)класифікація життєвих форм рослин помірної зони, яка враховує вегетативне розмноження О. В. Смирнової, Л. Б. Заугольнової.Аналіз типів біоморф за класифікацією К. Раункієра показав, що переважна більшість видів дендрофлори належить до фанерофітів, серед них, в залежності від висоти рослини, виділяють різні групи –мегафанерофіти (наприклад, Populus tremula), мезофанерофіти (Salix alba), мікрофанерофіти (Amorpha fruticosa), нанофанерофіти (Amygdalus nana) та хамефіти (Ephedra distachia).За еколого-морфологічною класифікацією життєвих форм І. Г. Сєрєбрякова у флорі Парку домінують дерева лісостепового типу та дерева лісового типу.Дерева, які відносяться до однієї життєвої форми, часто відрізняютьсяпринципами наростання та формування крони, галуженням, загальним габітусом, що загалом розглядається як архітектурна модель конкретного виду. За класифікацією архітектурних моделей Ф.Аллє, Р. Ольдемана і П. Томлінсона у флорі Парку виділено п’ять моделей, серед яких, значне представництво мають види, що формуються за моделлю Томлінсона, менше представництво мають види, що формуються за моделями Манжено та Шампанії.Ключові слова: флора, дерево, класифікація, життєва форма, кущ.


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