Nature of chromosome pairing in SH-genome octaploids involving Elymus canadensis and E. trachycaulus: a genome dose dependent bivalentizing mechanism

Genome ◽  
1990 ◽  
Vol 33 (5) ◽  
pp. 613-618 ◽  
Author(s):  
P. S. Kumar ◽  
P. D. Walton
Keyword(s):  
Chromosome Pairing ◽  
Chromosome Doubling ◽  
Tetraploid Hybrid ◽  
Polygenic Control ◽  
A Genome ◽  
Structural Differences ◽  
Bivalent Formation ◽  
Elymus Canadensis ◽  
Tetraploid Level ◽  
Dose Dependent

In spite of regular chromosome pairing, hybrids between Elymus canadensis (Linnaeus) and E. trachycaulus (Link) Gould ex Shinners at the tetraploid level are sterile owing to structural differences between the donor genomes. However, the hybrids between these species at the octaploid level (obtained through chromosome doubling of the tetraploid hybrid and also from a cross between the octaploids of E. canadensis and E. trachycaulus) exhibited a predominance of bivalents in meiosis in spite of the autotetraploid nature of their constituent S and H genomes. The colchicine-induced amphiploids showed varying degrees of fertility. Comparison of chromosome pairing in the hybrid octaploids with that in the parental octaploids and hexaploids revealed that random bivalent formation is promoted when the S and (or) H genomes are at the tetraploid level, but not when they are in the triploid state. A bivalentizing mechanism under polygenic control is suggested to explain the predominance of bivalents in the tetraploid S and H genomes.Key words: Elymus, S genome, H genome, octaploids, bivalents, bivalentization.

A AND B GENOME HOMOEOLOGIES IN TETRAPLOID AND OCTOPLOID CYTOTYPES OF BROMUS INERMIS

1979 ◽  
Vol 21 (1) ◽  
pp. 65-71 ◽  
Author(s):  
K. C. Armstrong
Keyword(s):  
Chromosome Pairing ◽  
Convincing Evidence ◽  
Bromus Inermis ◽  
Open Pollination ◽  
Homoeologous Chromosome ◽  
Genome Chromosome ◽  
B Genome ◽  
Homoeologous Chromosome Pairing ◽  
A Genome ◽  
Structural Differences

Homoeology between the A and B genomes of allotetraploid (2n = 4x = 28) AiAiBiBi and autoallooctoploid (2n = 8x = 56) AIAIAIAIBIBIBIBI cytotypes of B. inermis Leyss. was studied in a tetraploid F1 hybrid (AeAeAiBi) from 4x B. erectus × 4x B. inermis and in a haplo-triploid (AIeAIeBI) which occurred spontaneously in the F2 from open-pollination among plants of the hexaploid F1 hybrid (AeAeAIAIBIBI) from 4x B. erectus × 8x B. inermis. Chromosome pairing at metaphase I in both the tetraploid (AeAeAiBi) and haplo-triploid (AIeAIeBI) indicated that for each A genome chromosome there was a corresponding B genome homoeologue. There was no convincing evidence of gross structural differences between the two homoeologous genomes. The frequency of trivalent formation in the haplo-triploid was approximately one-half that found in two pentaploids (2n = 5x = 35) AIeAIeAIBIBI. This indicates that the pairing affinity between the A and B genomes is one-half that between homologues as expressed by trivalent formation in triploids of the type AAB and AAA. Homoeologous chromosome pairing (A with B) may be controlled by a gene which is hemizygous ineffective.

Chromosome pairing in triploid and tetraploid hybrids in Elytrigia (Triticeae; Poaceae)

1984 ◽  
Vol 26 (5) ◽  
pp. 519-522 ◽  
Author(s):  
Patrick E. McGuire
Keyword(s):  
Chromosome Pairing ◽  
Genome Analysis ◽  
Triploid Hybrid ◽  
Pollen Mother Cells ◽  
Tetraploid Hybrid ◽  
A Genome ◽  
Mother Cells ◽  
Metaphase I

Mean chromosome pairing of 5.14I + 1.28II (rod) + 3.86II (ring) + 1.47III + 0.11IV (open) + 0.11V was observed in pollen mother cells at metaphase I in the triploid hybrid Elytrigia scirpea (K. Presl) Holub, 2n = 4x = 28 × E. bessarabica (Savul. et Rayss) Dubrovik, 2n = 4x = 14. Mean chromosome pairing of 3.71I + 2.29II (rod) + 1.82II (ring) + 2.64III + 0.29IV (open) was observed in the triploid hybrid E. curvifolia (Lange) Holub, 2n = 4x = 28 × E. bessarabica. Mean chromosome pairing of 3.00I + 0.93II (rod) + 1.57II (ring) + 1.36III + 1.79IV (open) + 1.I4IV (closed) + 0.79V was observed in the tetraploid hybrid E. junceiformis Löve et Löve, 2n = 4x = 28 × E. curvifolia. The first hybrid provides the first evidence by genome analysis that E. bessarabica possesses a genome (designated Eb) which is closely related to the genomes of E. scirpea (ES and ESC) and hence to the E genome of E. elongata (Host) Nevski, 2n = 2x = 14. The second and third hybrids provide the first evidence that the two genomes of E. curvifolia (designated EC and ECU) are related to the Eb genome of E. bessarabica and thus to the E genome of E. elongata.Key words: Elytrigia, homoeology, Triticum, phylogeny, triploid, tetraploid.

CHROMOSOME RELATIONSHIPS AND MORPHOLOGICAL COMPARISONS BETWEEN THE DIPLOID OATS AVENA PROSTRATA, A. CANARIENSIS AND THE TETRAPLOID A. MAROCCANA

1980 ◽  
Vol 22 (2) ◽  
pp. 287-294 ◽  
Author(s):  
J. M. Leggett
Keyword(s):  
Chromosome Pairing ◽  
Cytological Evidence ◽  
Geographical Data ◽  
Tetraploid Hybrid ◽  
A Genome

The morphology and chromosome pairing of the triploid hybrids Avena canariensis Baum, Rajhathy et Sampson × A. maroccana Gdgr., A. prostrata Ladiz × A. maroccana, the diploid A. prostrata and the tetraploid derived between A. prostrata and A. canariensis and the tetraploid hybrid between this derived tetraploid and A. maroccana are described in relation to genomic affinities between these species. The cytological evidence is at variance with morphological and geographical data which initially indicated that A. canariensis was the donor of the A genome of the A. maroccana-A. murphyi group of tetraploids. The possible relationship between the species is briefly discussed.

Putative diploid ancestors of 80-chromosome Glycine tabacina

Genome ◽  
1992 ◽  
Vol 35 (1) ◽  
pp. 140-146 ◽  
Author(s):  
R. J. Singh ◽  
K. P. Kollipara ◽  
F. Ahmad ◽  
T. Hymowitz
Keyword(s):  
Adventitious Roots ◽  
Chromosome Doubling ◽  
Colchicine Treatment ◽  
Meiotic Pairing ◽  
B Genome ◽  
Specific Hybridization ◽  
A Genome ◽  
Genome Homology ◽  
Glycine Tabacina ◽  
Natural Mutation

The objective of this study was to discover the diploid progenitors of 80-chromosome Glycine tabacina with adventitious roots (WAR) and no adventitious roots (NAR). Three synthetic amphiploids were obtained by somatic chromosome doubling. These were (i) (G. latifolia, 2n = 40, genome B1B1,) × (G. microphylla, 2n = 40, genome BB) = F1(2n = 40, genome BB1) – 0.1% colchicine treatment (CT) – 2n = 80, genome BBB1B1; (ii) (G. canescens, 2n = 40, genome AA) × G. microphylla, 2n = 40, genome BB) = F1 (2n = 40, genome AB) – (CT) – 2n = 80, genome AABB; (iii) (G. latifolia, 2n = 40, B1B1) × G. canescens, 2n = 40, AA) = F1 (2n = 40, genome AB1) – (CT) – 2n = 80, genome AAB1B1. The segmental allotetraploid BBB1B1 was morphologically similar to the 80-chromosome G. tabacina (WAR), but meiotic pairing data in F1 hybrids did not support the complete genomic affinity. Despite normal diploid-like meiosis in allotetraploids AABB and AAB1B1, AABB was completely fertile, while pod set in AAB1B1 was very sparse. Morphologically, allotetraploid AABB was indistinguishable from the 80-chromosome G. tabacina (NAR) but in their F1 hybrids, the range of univalents at metaphase I was wide (4–44). The allotetraploid AAB1B1 did not morphologically resemble the 80-chromosome G. tabacina (NAR). However, the F1 hybrid of AABB × AAB1B1 showed normal meiosis with an average chromosome association (range) of 1.7 I (0–4) + 39.2 II (38–40). Based on this information, we cannot correctly deduce the diploid progenitor species of the 80-chromosome G. tabacina (NAR). The lack of exact genome homology may be attributed to the geographical isolation, natural mutation, and growing environmental conditions since the inception of 80-chromosome G. tabacina. Thus, it is logical to suggest that the 80-chromosome G. tabacina (NAR) is a complex, probably synthesized from A genome (G. canescens, G. clandestina, G. argyrea, G. tomentella D4 isozyme group) and B genome (G. latifolia, G. microphylla, G. tabacina) species, and the 80-chromosome G. tabacina (WAR) complex was evolved through segmental allopolyploidy from the B genome species.Key words: Glycine spp., allopolyploidy, colchicine, genome, intra- and inter-specific hybridization, polyploid complex.

CHROMOSOME PAIRING IN POA ANNUA L.

1973 ◽  
Vol 15 (3) ◽  
pp. 549-551 ◽  
Author(s):  
W. M. Ellis ◽  
B. T. O. Lee ◽  
D. M. Calder
Keyword(s):  
Chromosome Pairing ◽  
Breeding System ◽  
Tetraploid Plant ◽  
Poa Annua ◽  
Diploid Population ◽  
Bivalent Formation

Cytological studies carried out on six tetraploid and one diploid population and a synthesized tetraploid plant have shown regular bivalent formation at meiosis. This regularity appears to be genetically controlled in this species. Plants from all the populations behave as diploids. The implications of this regular disomic chromosome pairing on recombination, variation and the breeding system of P. annua are considered.

GENETIC REGULATION OF HETEROGENETIC CHROMOSOME PAIRING IN POLYPLOID SPECIES OF THE GENUS TRITICUM sensu lato

1982 ◽  
Vol 24 (1) ◽  
pp. 57-82 ◽  
Author(s):  
Patrick E. McGuire ◽  
Jan Dvořák
Keyword(s):  
Triticum Aestivum ◽  
Chromosome Pairing ◽  
Chinese Spring ◽  
Genetic Regulation ◽  
Triticum Aestivum L ◽  
Polyploid Species ◽  
D Genome ◽  
Chromosome 5B ◽  
A Genome

Polyploid species of Triticum sensu lato were crossed with Triticum aestivum L. em. Thell. cv. Chinese Spring monotelodisomics or ditelosomics that were monosomic for chromosome 5B. Progeny from these crosses were either euploid, nullisomic for 5B, monotelosomic for a given Chinese Spring chromosome, or nullisomic for 5B and monotelosomic simultaneously. The Chinese Spring telosome in the hybrids permitted the evaluation of autosyndesis of chromosomes of the tested species. In addition, several Chinese Spring eu- and aneuhaploids were produced. Genotypes of T. cylindricum Ces., T. juvenale Thell., T. triunciale (L.) Raspail, T. ovatum (L.) Raspail, T. columnare (Zhuk.) Morris et Sears, T. triaristatum (Willd.) Godr. et Gren., and T. rectum (Zhuk.) comb. nov. were all shown to have suppressive effects on heterogenetic pairing in hybrids lacking 5B or 3AS, whereas T. kotschyi (Boiss.) Bowden had no effect. It was concluded that diploid-like meiosis in these species is due to genetic regulation. A number of these genotypes promoted heterogenetic pairing in the presence of 5B. A model is presented to explain this dichotomous behavior of the tested genotypes. Monotelosomic-3AL haploids had a greater amount of pairing than did euhaploid Chinese Spring, which substantiated the presence of a pairing suppressor(s) on the 3AS arm. Evidence is presented that shows that T. juvenale does not have a genome homologous with the D genome of T. aestivum.

scholarly journals A genome-wide CRISPR screen identifies interactors of the autophagy pathway as conserved coronavirus targets

2021 ◽  
Author(s):  
Annika Kratzel ◽  
Jenna N. Kelly ◽  
Yannick Brueggemann ◽  
Jasmine Portmann ◽  
Philip V’kovski ◽  
...  
Keyword(s):  
Host Factors ◽  
The Novel ◽  
Genome Wide ◽  
A Genome ◽  
Dependent Inhibition ◽  
Crispr Screen ◽  
Dose Dependent Inhibition ◽  
Autophagy Pathway ◽  
Approved Drugs ◽  
Dose Dependent

SummaryOver the past 20 years, the emergence of three highly pathogenic coronaviruses (CoV) – SARS-CoV, MERS-CoV, and most recently SARS-CoV-2 – has shown that CoVs pose a serious risk to human health and highlighted the importance of developing effective therapies against them. Similar to other viruses, CoVs are dependent on host factors for their survival and replication. We hypothesized that evolutionarily distinct CoVs may exploit similar host factors and pathways to support their replication cycle. Here, we conducted two independent genome-wide CRISPR/Cas9 knockout screens to identify pan-CoV host factors required for the replication of both endemic and emerging CoVs, including the novel CoV SARS-CoV-2. Strikingly, we found that several autophagy-related genes, including the immunophilin FKBP8, TMEM41B, and MINAR1, were common host factors required for CoV replication. Importantly, inhibition of the immunophilin family with the compounds Tacrolimus, Cyclosporin A, and the non-immunosuppressive derivative Alisporivir, resulted in dose-dependent inhibition of CoV replication in primary human nasal epithelial cell cultures that resemble the natural site of virus replication. Overall, we identified host factors that are crucial for CoV replication and demonstrate that these factors constitute potential targets for therapeutic intervention by clinically approved drugs.

scholarly journals Pea Grain Protein Content Across Italian Environments: Genetic Relationship With Grain Yield, and Opportunities for Genome-Enabled Selection for Protein Yield

2022 ◽  
Vol 12 ◽  
Author(s):  
Margherita Crosta ◽  
Nelson Nazzicari ◽  
Barbara Ferrari ◽  
Luciano Pecetti ◽  
Luigi Russi ◽  
...  
Keyword(s):  
Grain Yield ◽  
Protein Content ◽  
Unit Area ◽  
Central Italy ◽  
Protein Yield ◽  
Model Construction ◽  
Environment Interaction ◽  
Polygenic Control ◽  
A Genome ◽  
Ril Population

Wider pea (Pisum sativum L.) cultivation has great interest for European agriculture, owing to its favorable environmental impact and provision of high-protein feedstuff. This work aimed to investigate the extent of genotype × environment interaction (GEI), genetically based trade-offs and polygenic control for crude protein content and grain yield of pea targeted to Italian environments, and to assess the efficiency of genomic selection (GS) as an alternative to phenotypic selection (PS) to increase protein yield per unit area. Some 306 genotypes belonging to three connected recombinant inbred line (RIL) populations derived from paired crosses between elite cultivars were genotyped through genotyping-by-sequencing and phenotyped for grain yield and protein content on a dry matter basis in three autumn-sown environments of northern or central Italy. Line variation for mean protein content ranged from 21.7 to 26.6%. Purely genetic effects, compared with GEI effects, were over two-fold larger for protein content, and over 2-fold smaller for grain and protein yield per unit area. Grain yield and protein content exhibited no inverse genetic correlation. A genome-wide association study revealed a definite polygenic control not only for grain yield but also for protein content, with small amounts of trait variation accounted for by individual loci. On average, the GS predictive ability for individual RIL populations based on the rrBLUP model (which was selected out of four tested models) using by turns two environments for selection and one for validation was moderately high for protein content (0.53) and moderate for grain yield (0.40) and protein yield (0.41). These values were about halved for inter-environment, inter-population predictions using one RIL population for model construction to predict data of the other populations. The comparison between GS and PS for protein yield based on predicted gains per unit time and similar evaluation costs indicated an advantage of GS for model construction including the target RIL population and, in case of multi-year PS, even for model training based on data of a non-target population. In conclusion, protein content is less challenging than grain yield for phenotypic or genome-enabled improvement, and GS is promising for the simultaneous improvement of both traits.

THE SIGNIFICANCE OF MEIOTIC CHROMOSOME PAIRING IN TETRAPLOID (2n = 28) BROMUS PUMPELLIANUS SCRIBN. SSP. DICKSONII

1972 ◽  
Vol 14 (4) ◽  
pp. 763-771 ◽  
Author(s):  
K. C. Armstrong
Keyword(s):  
Chromosome Pairing ◽  
High Frequency ◽  
Chiasma Frequency ◽  
Karyotype Analysis ◽  
Meiotic Chromosome ◽  
Low Frequency ◽  
Meiotic Chromosome Pairing ◽  
Ring Bivalents ◽  
Bivalent Formation

Bivalent formation was predominant at meiosis in B. pumpellianus ssp. dicksonii. The average in 15 plants ranged from 11.38 to 13.77 bivalents per cell. The high chiasma frequency (23.41-26.74) was a reflection of the high frequency of ring bivalents (9.48-12.42). A low frequency of quadrivalents occurred (0.06-1.22). A karyotype of this species was presented from both a highly contracted and moderately contracted cell and the differences between these two were noted. Four satellites were found, two large and two minute. There were 3-5 submedian and 5-7 median chromosomes depending on the cell studied. In addition two subterminal chromosomes were present. The meiotic and karyotype analysis suggest a deviation from an autotetraploid behaviour, but the presence of quadrivalents and similarities between pairs in the karyotype suggested closely related genomes. Alternatively it was considered that the quadrivalents could be due to translocation heterozygotes. The implications of these results were discussed in relation to the reported meiotic events in the octoploids, B. inermis and B. pumpellianus.

GENOME RELATIONSHIPS IN BROMUS ERECTUS, B. PUMPELLIANUS SSP. DICKSONII AND B. PUMPELLIANUS

1975 ◽  
Vol 17 (3) ◽  
pp. 391-394
Author(s):  
K. C. Armstrong
Keyword(s):  
Genetic Control ◽  
Chromosome Pairing ◽  
Low Frequency ◽  
Homoeologous Chromosome ◽  
Homoeologous Chromosome Pairing ◽  
Bivalent Formation ◽  
Bromus Erectus

Chromosome pairing was studied in hexaploid (2n = 42) hybrids of B. erectus (2n = 28) × B. pumpellianus (2n = 56) and B. pumpellianus ssp. dicksonii (2n = 28) × B. pumpellianus. Chromosome pairing in the B. erectus × B. pumpellianus hybrid was complete with predominantly bivalent formation and a low frequency of quadrivalents. The pairing results support the contention that B. pumpellianus is an autoalloploid with an AAAABBBB genome formula. The B. pumpellianus ssp. dicksonii × B. pumpellianus hybrid has an AAABBB genome formula. The presence of quadrivalents, hexavalents and cells containing a total number of bivalents or bivalents plus trivalents in excess of 14 indicated pairing between the A and B genomes. However, a high univalent frequency showed that the A and B genomes were homoeologous rather than homologous. Evidence for genetic control of homoeologous chromosome pairing and homoeologous differentiation between the genomes of the species is discussed.

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