DNA polymorphism in the stem nematode Ditylenchus dipsaci: development of diagnostic markers for normal and giant races

Genome ◽  
2003 ◽  
Vol 46 (6) ◽  
pp. 1077-1083 ◽  
Author(s):  
Magali Esquibet ◽  
Eric Grenier ◽  
Olivier Plantard ◽  
Fouad Abbad Andaloussi ◽  
Georges Caubel
Keyword(s):  
Vicia Faba ◽  
Dna Polymorphism ◽  
Distinct Species ◽  
Genetic Distances ◽  
Diagnostic Markers ◽  
Intraspecific Polymorphism ◽  
Efficient Tool ◽  
Normal Populations ◽  
Ditylenchus Dipsaci ◽  
Two Populations

DNA polymorphism in the Ditylenchus dipsaci complex was investigated using amplified fragment length polymorphism (AFLP) to determine the relationships among populations growing mainly on Vicia faba and to develop diagnostic markers. Twenty-two populations of D. dipsaci originating from different geographical areas and one population of Ditylenchus myceliophagus were used. AFLP proved to be a powerful method to reveal intraspecific polymorphism even within the giant type. The analysis showed a clear distinction between the giant and normal populations, with genetic distances similar to those observed between normal populations and D. myceliophagus or giant populations and D. myceliophagus, strengthening the hypothesis that these two nematode types could be considered distinct species. Two specific AFLP markers differentiating the two types were converted into sequenced characterized amplified region (SCAR) markers. Used in a multiplex PCR, the SCAR primers proved to be a rapid and efficient tool to identify the giant and the normal types of D. dipsaci.Key words: Ditylenchus dipsaci, Vicia faba, giant type, AFLP, SCAR.

Molecular phylogeny and taxonomic evaluation of the genus Asaccus Dixon and Anderson, 1973 (Reptilia: Phyllodactylidae) in Iran

2020 ◽  
pp. 207-214
Author(s):  
Akbar Fattahi
Keyword(s):  
Molecular Phylogeny ◽  
Nuclear Gene ◽  
Genetic Distances ◽  
Genetic Lineage ◽  
New Taxon ◽  
Zagros Mountains ◽  
Relict Species ◽  
Taxonomical Revision ◽  
Two Populations ◽  
Taxonomic Evaluation

The Iranian species of the phyllodactylid geckos of the genus Asaccus are found only in the valleys of the Zagros Mountains, a region which represents an important area of endemism in western Iran. Recently, many relict species have been described from the central and southern parts of the Zagros Mountains, which were previously known as A. elisae. The recent descriptions of species within this complex suggest that diversity within the genus may be higher than expected and that its taxonomy and systematics should be revised. In the present study, phylogenetic relationships within the genus Asaccus were evaluated using two mitochondrial and one nuclear gene. Genetically, the genus shows high levels of variability. The molecular phylogeny of the genus suggests the presence of three main clades along the Zagros Mountains with the southern population (from the Hormozgan province) and one clade (A. sp8 and A. sp9) being sister taxon to A. montanus from UAE. The remaining samples are separated into two reciprocally monophyletic groups: the northern (Kurdistan, Kermanshah and Ilam provinces) and the central (Lorestan, Khuzestan, Kohgilouye-Bouyer Ahmad and Fars provinces) Zagros groups. The results of the present study suggest that populations attributed to A. elisae in Iran correspond to distinct lineages with high genetic distances. In brief, our results suggest that the genus needs a major taxonomical revision The Arabian origin of the genus has not been confirmed, because two populations from Zagros were located within the A. montanus, A. gallagheri and A. platyrhynchus clade. Further morphological analyses are needed to systematically define each genetic lineage as a new taxon.

Morphological and molecular evidence places Maronina into synonymy with Protoparmelia (Ascomycota: Lecanorales)

2011 ◽  
Vol 43 (6) ◽  
pp. 561-567 ◽  
Author(s):  
K. PAPONG ◽  
G. KANTVILAS ◽  
H. T. LUMBSCH
Keyword(s):  
Dna Sequence ◽  
Sequence Data ◽  
Distinct Species ◽  
Genetic Distances ◽  
Molecular Evidence ◽  
New Combinations ◽  
Secondary Chemistry ◽  
Phenotypic Characters ◽  
Dna Sequence Data ◽  
Phylogenetic Placement

AbstractThe phylogenetic placement of the genus Maronina was studied, based chiefly on phenotypic characters such as thallus colour and anatomy, secondary chemistry, the anatomy of the excipulum and the ascus-type. DNA sequence data of mitochondrial and nuclear ribosomal loci from some of the species support the hypothesis that Maronina is nested within Protoparmelia. Hence, Maronina is reduced to synonymy with Protoparmelia. Comparison of genetic distances suggests that the two varieties within M. orientalis should be regarded as distinct species. Consequently, the new combinations Protoparmelia australiensis (Hafellner & R. W. Rogers) Kantvilas et al., P. corallifera (Kantvilas & Papong) Kantvilas et al., P. hesperia (Kantvilas & Elix) Kantvilas et al., P. multifera (Nyl.) Kantvilas et al., and P. orientalis (Kantvilas & Papong) Kantvilas et al. are proposed.

scholarly journals 5-AMINOURACIL TREATMENT

1971 ◽  
Vol 48 (2) ◽  
pp. 248-252 ◽  
Author(s):  
S. H. Socher ◽  
D. Davidson
Keyword(s):  
Mitotic Index ◽  
Vicia Faba ◽  
Cell Population ◽  
Lateral Roots ◽  
Proliferating Cells ◽  
Dividing Cells ◽  
Proliferating Cell ◽  
Two Populations

Treatment of Vicia faba lateral roots with a range of concentrations of 5-aminouracil (5-AU) indicate that cells are stopped at a particular point in interphase. The timing of the fall in mitotic index suggests that cells are held at the S - G2 transition. When cells are held at this point, treatments with 5-AU can be used to estimate the duration of G2 + mitosis/2 of proliferating cells. Treatment with 5-AU can also be used to demonstrate the presence of subpopulations of dividing cells that differ in their G2 duration. Using this method, 5-AU-induced inhibition, we have confirmed that in V. faba lateral roots there are two populations of dividing cells: (a) a fast-dividing population, which makes up ∼85% of the proliferating cell population and has a G2 + mitosis/2 duration of 3.3 hr, and (b) a slow-dividing population, which makes up ∼15% of dividing cells and has a G2 duration in excess of 12 hr. These estimates are similar to those obtained from percentage labeled mitosis (PLM) curves after incorporation of thymidine-3H.

scholarly journals Analysis of intraspecific polymorphism of Nitraria sibirica Pall. using the ISSR technique

2021 ◽  
Vol 38 ◽  
pp. 00054
Author(s):  
Sofia A. Khozyaykina ◽  
Evgeny V. Banaev
Keyword(s):  
Genetic Variability ◽  
Genetic Distance ◽  
Dna Polymorphism ◽  
Natural Populations ◽  
Dna Amplification ◽  
Issr Marker ◽  
Intraspecific Polymorphism ◽  
Nitraria Sibirica ◽  
The Republic ◽  
Issr Primers

The analysis of DNA polymorphism of Nitraria sibirica Pall. was carried out at 13 natural populations of the Republic of Altai and Altai Territory using the ISSR technique. Seven effective ISSR primers have been identified to analyze DNA polymorphism in N. sibirica. 99 DNA fragments were yielded at DNA amplification with these primers, 66 of them were polymorphic. The genetic distance Nei (D) between the studied populations of N. sibirica averaged 0.32, at mean 0.09 - within populations. An identification ISSR marker has been revealed, which can be used to study the genetic variability of the genus Nitraria L. (Nitrariaceae) species.

Electrophoretic characterization of Solomon Islands populations of Nyctimene and Rousettus (Chiroptera: Pteropodidae).

2003 ◽  
Vol 25 (1) ◽  
pp. 41 ◽  
Author(s):  
JM Macaranas ◽  
D Colgan ◽  
S Ingleby
Keyword(s):  
Papua New Guinea ◽  
Solomon Islands ◽  
Taxonomic Status ◽  
Genetic Distances ◽  
Allozyme Data ◽  
Separate Species ◽  
Bismarck Archipelago ◽  
A Minor ◽  
Two Populations

The taxonomic status of fruitbats belonging to the genera Nyctimene and Rousettus from the Solomon Islands was investigated using allozyme electrophoresis. Two populations from the Bismarck Archipelago (Papua New Guinea) were included as reference profiles. The allozyme data at 23 loci assigned all specimens into either Nyctimene albiventer or Nyctimene major. The N. albiventer specimens comprised two subspecies, N. a. papuanus from the Bismarck Archipelago and N. a. bougainville from the Solomon Islands. No support was evident for bougainville being a separate species, and indeed the data suggest that N. a. bougainville encompasses the previously described species N. malaita and subspecies N. a. minor. Genetic distances between populations of R. amplexicaudatus from the Bismarck Archipelago and the Solomon Islands were generally low, supporting recent morphological assessments that the subspecies hedigeri, from the majority of the Solomon Islands, should be considered synonymous with subspecies brachyotis. An individual from Choiseul (Solomon Islands) with a distinctive allozyme profile is the only evidence of taxonomic complexity in R. amplexicaudatus.

Genetic diversity of three Aegla species (Decapoda, Anomura) revealed by AFLP and mtDNA markers

Crustaceana ◽  
2019 ◽  
Vol 92 (4) ◽  
pp. 445-462
Author(s):  
Bianca L. Zimmermann ◽  
Jober V. De Vargas Machado ◽  
Sandro Santos ◽  
Marlise L. Bartholomei-Santos
Keyword(s):  
Genetic Diversity ◽  
Distinct Species ◽  
Genetic Distances ◽  
Species Level ◽  
Taxonomic Resolution ◽  
Similar Species ◽  
Southern Brazil ◽  
Low Levels ◽  
Management And Conservation ◽  
Mtdna Markers

Abstract Representatives of the genus Aegla present a conserved morphology; thus, the increased use of molecular markers has raised many taxonomic issues. We used AFLP and mtDNA to investigate the genetic differentiation and phylogenetic relationships of morphologically similar species with overlapping distribution areas in southern Brazil: A. georginae, A. ludwigi, and A. platensis. While A. platensis is widely distributed, the critically endangered A. georginae and A. ludwigi have limited distributions. Although both markers showed populations with low levels of genetic variability, they differed markedly in revealing relationships between populations; according to AFLP, the genetic distances between A. platensis populations were as high as those between distinct species, a result not observed when considering mtDNA data. We emphasize that the use of multiple lines of evidence is necessary for defining correct levels of genetic diversity and a good species-level taxonomic resolution. Such features are essential for the management and conservation of Aegla species.

Geographic dimorphism in the mountain brushtail possum (Trichosurus caninus): the case for a new species

2002 ◽  
Vol 50 (4) ◽  
pp. 369 ◽  
Author(s):  
D. B. Lindenmayer ◽  
J. Dubach ◽  
K. L. Viggers
Keyword(s):  
New Species ◽  
New South ◽  
New South Wales ◽  
Distinct Species ◽  
Genetic Distances ◽  
Brushtail Possum ◽  
Genetic Characteristics ◽  
Simple Index ◽  
South Wales ◽  
Eastern Australia

The morphological and genetic characteristics of the mountain brushtail possum (Trichosurus caninus) are described for animals from a range of locations throughout its known geographic distribution in eastern Australia. Although there is considerable variation among populations, unequivocal morphological and genetic differences exist between northern and southern populations of the species. Specimens from southern populations (from Victoria) have a significantly (P < 0.001) larger ear conch, a significantly (P < 0.001) longer pes, and a significantly (P < 0.001) shorter tail than do specimens from northern populations (from New South Wales and Queensland). Animals can be clearly distinguished using a simple index based on these three morphological measures, which are gathered from live animals. North–south dimorphism is strongly supported by patterns in genetic data that show genetic distances of 2.7–3.0% between the southern and northern populations. The combined outcomes of morphological and genetic analyses suggest the existence of two distinct species. We recommend that the northern form, distributed from central New South Wales north to central Queensland, retain the name Trichosurus caninus; the southern form from Victoria is described here as Trichosurus cunninghami, sp. nov. The common names of these new species should be the 'short-eared possum' and the 'mountain brushtail possum', respectively.

Sign in / Sign up

Export Citation Format

Share Document