Multivariate Approach to Study Species Assemblages at Large Spatiotemporal Scales: The Community Structure of the Epibenthic Fauna of the Estuary and Gulf of St. Lawrence

1990 ◽  
Vol 47 (7) ◽  
pp. 1364-1377 ◽  
Author(s):  
P.-L. Ardisson ◽  
E. Bourget ◽  
P. Legendre
Keyword(s):  
Community Structure ◽  
Spatial Structure ◽  
Spatial Scales ◽  
Geographic Distance ◽  
External Input ◽  
Integrated System ◽  
Hierarchical Organization ◽  
North Shore ◽  
Ordination Techniques ◽  
Lower North Shore

We investigated hierarchical organization and spatiotemporal discontinuities in species abundances in the epibenthic community of the Estuary and Gulf of St. Lawrence. Quantitative samples were obtained from 1975 to 1984, on 161 collectors (navigation buoys) moored yearly from May through November. Maximum biomass values of the dominant species, common to all regions studied, were used to assess epibenthic community structure. Numerical methods were used to characterize spatial structure and temporal variability of the dominant assemblage. Spatially constrained clustering and ordination techniques revealed six broad biogeographic zones whose limits vary yearly. However, spatially unconstrained clustering and ordination techniques showed two major sets of non-continguous localities, each characterized by a singular biotic structure. Further, spatial autocorrelation analyses showed a significant relationship between biomass and geographic distance. The resulting spatial structure of biomass was dependent on the species considered. The multidimensional Mantel technique showed an 8-yr period of variation in community structure at large (whole system, Gulf) and intermediate (North Shore plus Lower North Shore) spatial scales. The amplitude and asymmetry of this temporal cycle increased as the spatial scale decreased. In spite of the observed discontinuous spatial patterns, the temporal oscillations in community structure detected at different spatial scales suggest that the Estuary-Gulf system responds to the external input of auxiliary energy as an integrated system.

scholarly journals The Patterns and Puzzles of Genetic Diversity of Endangered Freshwater Mussel Unio crassus Philipsson, 1788 Populations from Vistula and Neman Drainages (Eastern Central Europe)

Life ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 119
Author(s):  
Adrianna Kilikowska ◽  
Monika Mioduchowska ◽  
Anna Wysocka ◽  
Agnieszka Kaczmarczyk-Ziemba ◽  
Joanna Rychlińska ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Spatial Scales ◽  
Freshwater Mussel ◽  
Its Region ◽  
Strong Relationship ◽  
Mantel Test ◽  
Freshwater Ecosystems ◽  
Hierarchical Organization ◽  
Anthropogenic Factors

Mussels of the family Unionidae are important components of freshwater ecosystems. Alarmingly, the International Union for Conservation of Nature and Natural Resources Red List of Threatened Species identifies almost 200 unionid species as extinct, endangered, or threatened. Their decline is the result of human impact on freshwater habitats, and the decrease of host fish populations. The Thick Shelled River Mussel Unio crassus Philipsson, 1788 is one of the examples that has been reported to show a dramatic decline of populations. Hierarchical organization of riverine systems is supposed to reflect the genetic structure of populations inhabiting them. The main goal of this study was an assessment of the U. crassus genetic diversity in river ecosystems using hierarchical analysis. Different molecular markers, the nuclear ribosomal internal transcribed spacer ITS region, and mitochondrial DNA genes (cox1 and ndh1), were used to examine the distribution of U. crassus among-population genetic variation at multiple spatial scales (within rivers, among rivers within drainages, and between drainages of the Neman and Vistula rivers). We found high genetic structure between both drainages suggesting that in the case of the analyzed U. crassus populations we were dealing with at least two different genetic units. Only about 4% of the mtDNA variation was due to differences among populations within drainages. However, comparison of population differentiation within drainages for mtDNA also showed some genetic structure among populations within the Vistula drainage. Only one haplotype was shared among all Polish populations whereas the remainder were unique for each population despite the hydrological connection. Interestingly, some haplotypes were present in both drainages. In the case of U. crassus populations under study, the Mantel test revealed a relatively strong relationship between genetic and geographical distances. However, in detail, the pattern of genetic diversity seems to be much more complicated. Therefore, we suggest that the observed pattern of U. crassus genetic diversity distribution is shaped by both historical and current factors i.e. different routes of post glacial colonization and history of drainage systems, historical gene flow, and more recent habitat fragmentation due to anthropogenic factors.

Significant genetic differences among Heterodera schachtii populations within and among sugar beet production areas

Nematology ◽  
2020 ◽  
Vol 22 (2) ◽  
pp. 165-177 ◽  
Author(s):  
Rasha Haj Nuaima ◽  
Johannes Roeb ◽  
Johannes Hallmann ◽  
Matthias Daub ◽  
Holger Heuer
Keyword(s):  
Genetic Variation ◽  
Genetic Structure ◽  
Population Genetic Structure ◽  
Population Genetic ◽  
Spatial Scales ◽  
Geographic Distance ◽  
Heterodera Schachtii ◽  
Parasitic Nematodes ◽  
Neutral Genetic Variation ◽  
Production Areas

Summary Characterising the non-neutral genetic variation within and among populations of plant-parasitic nematodes is essential to determine factors shaping the population genetic structure. This study describes the genetic variation of the parasitism gene vap1 within and among geographic populations of the beet cyst nematode Heterodera schachtii. Forty populations of H. schachtii were sampled at four spatial scales: 695 km, 49 km, 3.1 km and 0.24 km. DGGE fingerprinting showed significant differences in vap1 patterns among populations. High similarity of vap1 patterns appeared between geographically close populations, and occasionally among distant populations. Analysis of spatially sampled populations within fields revealed an effect of tillage direction on the vap1 similarity for two of four studied fields. Overall, geographic distance and similarity of vap1 patterns of H. schachtii populations were negatively correlated. In conclusion, the population genetic structure was shaped by the interplay between the genetic adaptation and the passive transport of this nematode.

scholarly journals Archaeal ammonia oxidizers respond to soil factors at smaller spatial scales than the overall archaeal community does in a high Arctic polar oasis

2016 ◽  
Vol 62 (6) ◽  
pp. 485-491 ◽  
Author(s):  
Samiran Banerjee ◽  
Nabla Kennedy ◽  
Alan E. Richardson ◽  
Keith N. Egger ◽  
Steven D. Siciliano
Keyword(s):  
Community Structure ◽  
Spatial Scales ◽  
Archaeal Community ◽  
Diversity Indices ◽  
High Arctic ◽  
Total Carbon ◽  
Spatial Dependency ◽  
Edaphic Factors ◽  
Total Carbon Content ◽  
Arctic Soils

Archaea are ubiquitous and highly abundant in Arctic soils. Because of their oligotrophic nature, archaea play an important role in biogeochemical processes in nutrient-limited Arctic soils. With the existing knowledge of high archaeal abundance and functional potential in Arctic soils, this study employed terminal restriction fragment length polymorphism (t-RFLP) profiling and geostatistical analysis to explore spatial dependency and edaphic determinants of the overall archaeal (ARC) and ammonia-oxidizing archaeal (AOA) communities in a high Arctic polar oasis soil. ARC communities were spatially dependent at the 2–5 m scale (P < 0.05), whereas AOA communities were dependent at the ∼1 m scale (P < 0.0001). Soil moisture, pH, and total carbon content were key edaphic factors driving both the ARC and AOA community structure. However, AOA evenness had simultaneous correlations with dissolved organic nitrogen and mineral nitrogen, indicating a possible niche differentiation for AOA in which dry mineral and wet organic soil microsites support different AOA genotypes. Richness, evenness, and diversity indices of both ARC and AOA communities showed high spatial dependency along the landscape and resembled scaling of edaphic factors. The spatial link between archaeal community structure and soil resources found in this study has implications for predictive understanding of archaea-driven processes in polar oases.

scholarly journals Interhemispheric consistency of scale-dependent spatial variation in the structure of intertidal rocky-shore communities

2018 ◽  
Author(s):  
Alexis Catalán ◽  
Nelson Valdivia ◽  
Ricardo Scrosati
Keyword(s):  
Community Structure ◽  
Spatial Variation ◽  
Spatial Scales ◽  
Vertical Gradient ◽  
Sampling Interval ◽  
Biological Variation ◽  
Rocky Intertidal ◽  
Vertical Variation ◽  
Horizontal Variation ◽  
Sampling Intervals

In rocky intertidal environments, the vertical gradient of abiotic stress generates, directly or indirectly, significant spatial variation in community structure. Along shorelines within biogeographic regions, abiotic changes also generate horizontal biological variation, which when measured at large sampling intervals may surpass vertical biological variation. Little is known, however, on how vertical variation compares with horizontal variation measured at multiple spatial scales in habitats with similar environmental conditions. Here, we compare spatial variability in rocky-intertidal communities between vertical stress gradients and three horizontal spatial scales (sampling interval) across habitats experiencing the same wave exposure on the Northwest Atlantic (NWA) and Southeast Pacific (SEP) coasts. For both regions, the vertical variation in species richness and composition (Raup-Crick and Bray-Curtis indices) was higher than the variation measured at all horizontal scales, from a few cm to hundreds of km. The patterns of variation in community structure matched those of abundance for the dominant sessile organisms, the foundation species Ascophyllum nodosum (seaweed) in NWA and Perumytilus purpuratus (mussel) in SEP. This interhemispheric comparison reveals the tight link between environmental and biological variation, indicating that studies comparing spatial scales of biological variation must consider the underlying environmental variation in addition to simply scale alone.

scholarly journals Interhemispheric consistency of scale-dependent spatial variation in the structure of intertidal rocky-shore communities

2018 ◽  
Author(s):  
Alexis Catalán ◽  
Nelson Valdivia ◽  
Ricardo Scrosati
Keyword(s):  
Community Structure ◽  
Spatial Variation ◽  
Spatial Scales ◽  
Vertical Gradient ◽  
Sampling Interval ◽  
Biological Variation ◽  
Rocky Intertidal ◽  
Vertical Variation ◽  
Horizontal Variation ◽  
Sampling Intervals

In rocky intertidal environments, the vertical gradient of abiotic stress generates, directly or indirectly, significant spatial variation in community structure. Along shorelines within biogeographic regions, abiotic changes also generate horizontal biological variation, which when measured at large sampling intervals may surpass vertical biological variation. Little is known, however, on how vertical variation compares with horizontal variation measured at multiple spatial scales in habitats with similar environmental conditions. Here, we compare spatial variability in rocky-intertidal communities between vertical stress gradients and three horizontal spatial scales (sampling interval) across habitats experiencing the same wave exposure on the Northwest Atlantic (NWA) and Southeast Pacific (SEP) coasts. For both regions, the vertical variation in species richness and composition (Raup-Crick and Bray-Curtis indices) was higher than the variation measured at all horizontal scales, from a few cm to hundreds of km. The patterns of variation in community structure matched those of abundance for the dominant sessile organisms, the foundation species Ascophyllum nodosum (seaweed) in NWA and Perumytilus purpuratus (mussel) in SEP. This interhemispheric comparison reveals the tight link between environmental and biological variation, indicating that studies comparing spatial scales of biological variation must consider the underlying environmental variation in addition to simply scale alone.

scholarly journals Spatial analysis of phylogenetic community structure: New version of a classical method

2015 ◽  
Author(s):  
Carlo Ricotta ◽  
Eszter EA Ari ◽  
Giuliano Bonanomi ◽  
Francesco Giannino ◽  
Duncan Heathfield ◽  
...  
Keyword(s):  
Community Structure ◽  
Spatial Scales ◽  
Point Pattern ◽  
Maximum Deviation ◽  
Individual Plant ◽  
Phylogenetic Distance ◽  
Phylogenetic Structure ◽  
Phylogenetic Community Structure ◽  
Point Patterns ◽  
Wide Range

The increasing availability of phylogenetic information facilitates the use of evolutionary methods in community ecology to reveal the importance of evolution in the species assembly process. However, while several methods have been applied to a wide range of communities across different spatial scales with the purpose of detecting non-random phylogenetic patterns, the spatial aspects of phylogenetic community structure have received far less attention. Accordingly, the question for this study is: can point pattern analysis be used for revealing the phylogenetic structure of multi-species assemblages? We introduce a new individual-centered procedure for analyzing the scale-dependent phylogenetic structure of multi-species point patterns based on digitized field data. The method uses nested circular plots with increasing radii drawn around each individual plant and calculates the mean phylogenetic distance between the focal individual and all individuals located in the circular ring delimited by two successive radii. This scale-dependent value is then averaged over all individuals of the same species and the observed mean is compared to a null expectation with permutation procedures. The method detects particular radius values at which the point pattern of a single species exhibits maximum deviation from the expectation towards either phylogenetic aggregation or segregation. Its performance is illustrated using data from a grassland community in Hungary and simulated point patterns. The proposed method can be extended to virtually any distance function for species pairs, such as functional distances.

scholarly journals Small-scale spatial structure in plankton distributions

2007 ◽  
Vol 4 (2) ◽  
pp. 173-179 ◽  
Author(s):  
A. Tzella ◽  
P. H. Haynes
Keyword(s):  
Differential Equations ◽  
Spatial Structure ◽  
Delay Differential Equations ◽  
Spatial Scales ◽  
Time History ◽  
The Other ◽  
Small Scale ◽  
Maturation Time ◽  
Length Scales ◽  
Delay Differential

Abstract. The observed filamental nature of plankton populations suggests that stirring plays an important role in determining their spatial structure. If diffusive mixing is neglected, the various interacting biological species within a fluid parcel are determined by the parcel time history. The induced spatial structure has been shown to be a result of competition between the time evolution of the biological processes involved and the stirring induced by the flow as measured, for example, by the rate of divergence of the distance of neighbouring fluid parcels. In the work presented here we examine a simple biological model based on delay-differential equations, previously seen in Abraham (1998), including nutrients, phytoplankton and zooplankton, coupled to a strain flow. Previous theoretical investigations made on a differential equation model (Hernández-Garcia et al., 2002) imply that the latter two should share the same small-scale structure. The generalisation from differential equations to delay-differential equations, associated with the addition of a maturation time to the zooplankton growth, should not make a difference, provided sufficiently small spatial scales are considered. However, this theoretical prediction is in contradiction with the results of Abraham (1998), where the phytoplankton and zooplankton structures remain uncorrelated at all length scales. A new set of numerical experiments is performed here which show that these two regimes coexist. On larger scales, there is a decoupling of the spatial structure of the zooplankton distribution on the one hand, and the phytoplankton and nutrient on the other. On the other hand, at small enough length scales, the phytoplankton and zooplankton share the same spatial structure as expected by the theory involving no maturation time.

Spatial structuring of submerged aquatic vegetation in an estuarine habitat of the Gulf of Mexico

2012 ◽  
Vol 93 (4) ◽  
pp. 855-866 ◽  
Author(s):  
Aretha Moriana Burgos-León ◽  
David Valdés ◽  
Ma. Eugenia Vega ◽  
Omar Defeo
Keyword(s):  
Spatial Structure ◽  
Environmental Variables ◽  
Submerged Aquatic Vegetation ◽  
Aquatic Vegetation ◽  
Spatial Scales ◽  
Ruppia Maritima ◽  
Spatial Partitioning ◽  
Estuarine Habitat ◽  
Relative Contribution ◽  
Geostatistical Techniques

Seasonal changes in spatial structure of biomass of submerged aquatic vegetation (SAV) and environmental variables were evaluated in Celestun Lagoon, an estuarine habitat in Mexico. Geostatistical techniques were used to evaluate spatial autocorrelation and to predict the spatial distribution by kriging. The relative contribution of 11 environmental variables in explaining the spatial structure of biomass of SAV was evaluated by canonical correspondence analysis. Spatial partitioning between species of SAV was evident: the seagrasses Halodule wrightii and Ruppia maritima dominated the seaward and central zones of the lagoon, respectively, whereas the green alga Chara fibrosa was constrained to the inner zone. The spatial structure and seasonal variability of SAV biomass were best explained by organic carbon in the sediments, salinity and total suspended solids in the water column. Analysis at different spatial scales allowed identifying the importance of spatial structure in biotic and abiotic variables of this estuarine habitat.

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