Evaluating sampling sufficiency in fish assemblage surveys: a similarity-based approach

2001 ◽  
Vol 58 (9) ◽  
pp. 1782-1793 ◽  
Author(s):  
Yong Cao ◽  
David P Larsen ◽  
Robert M Hughes
Keyword(s):  
Species Richness ◽  
Fish Assemblage ◽  
Fish Assemblages ◽  
Simple Relationship ◽  
Jaccard Coefficient ◽  
New Approach ◽  
Total Species Richness ◽  
Local Species ◽  
A Site ◽  
Total Species

The number and identity of fish species occurring at a site at a particular time provide basic information for assessing biological integrity, inferring fish assemblage – environment relationships, and determining biodiversity patterns. Conclusions are often dependent on how sufficiently species richness and composition of fish assemblages are characterized by sampling. The proportion of total species richness obtained in a sample is an explicit measure of sampling sufficiency. However, because total species richness (TSRtru) at a site is often unknown, sampling sufficiency cannot be determined directly. To overcome this difficulty, we developed a new approach, which is based on a relationship between the proportion of TSRtru or %TSRtru and the similarity among replicate samples (autosimilarity). With autosimilarity measured with the Jaccard coefficient (JC), a simple relationship was established: %TSRtru = 100JC. Fourteen sites where TSRtru was reached or approached during sampling were selected from four surveys to validate this relationship. We used the approach to estimate the sample sizes required for 90, 95, and 100% TSRtru, indicating that widely differing sampling efforts among sites are needed to obtain the same proportion of the local species pool. The results strongly support the use of the new approach in evaluating sampling sufficiency in stream and river fish surveys.

Partial cutting reduces species richness of fungi on woody debris in oak-rich forests

2008 ◽  
Vol 38 (7) ◽  
pp. 1807-1816 ◽  
Author(s):  
Björn Nordén ◽  
Frank Götmark ◽  
Martin Ryberg ◽  
Heidi Paltto ◽  
Johan Allmér
Keyword(s):  
Species Richness ◽  
Woody Debris ◽  
Basal Area ◽  
Fruiting Bodies ◽  
Partial Cutting ◽  
Total Species Richness ◽  
Before And After ◽  
Closed Canopy ◽  
And Control ◽  
Total Species

Partial cutting is increasingly applied in European temperate oak-dominated forests for biofuel harvesting, and to counteract succession in protected stands. Effects on biodiversity of these measures need to be carefully evaluated, and species-rich but neglected taxa such as fungi should be considered. We studied the effects of partial cutting on fungal fruiting bodies on woody debris. In 21 closed canopy forests rich in large oaks in Sweden, on average 25%–30% of the basal area was cut. Fruiting bodies were counted and some were collected in treated and control plots before and after treatment. We found 334 basidiomycete and 47 ascomycete species. Species richness of basidiomycetes declined significantly more in treated plots (on average 26%) than in control plots (on average 13%) between seasons. Species richness of ascomycetes increased by 17% in control plots and decreased by 2% in treated plots. Total species richness was significantly reduced on fine woody debris (1–10 cm in diameter), but not on coarse woody debris (>10 cm). Overall species composition did not change significantly as a result of partial cutting, but red-listed species tended to decrease more in treated plots. We suggest that approximately 30% of the stands should not be thinned, and dead stems and fallen branches should not be removed, to favor saproxylic fungi and their associated fauna.

scholarly journals Fish species diversity in headwaters streams of Paraguay and Paraná Basins

2007 ◽  
Vol 50 (6) ◽  
pp. 1033-1042 ◽  
Author(s):  
Yzel Rondon Súarez ◽  
Sabrina Bigatão Valério ◽  
Karina Keyla Tondado ◽  
Alexandro Cezar Florentino ◽  
Thiago Rota Alves Felipe ◽  
...  
Keyword(s):  
Species Richness ◽  
Species Diversity ◽  
Environmental Factors ◽  
Fish Species ◽  
Total Species Richness ◽  
Paraná Basin ◽  
Parana Basin ◽  
Number Of Individuals ◽  
Total Species ◽  
Fish Species Diversity

The influence of spatial, temporal and environmental factors on fish species diversity in headwater streams in Paraguay and Paraná basins, Brazil was examined. A total of 4,605 individuals were sampled, distributed in 60 species. The sampled streams in Paraná basin presented a larger total species richness (42) than Paraguay streams (40). However the estimated richness was larger in Paraguay basin (53) than Paraná streams (50). The streams of Paraná basin had a greater mean species richness and evenness, while more individuals per sample were found in the Paraguay basin. Difference between the sub-basins were found in the Paraguay basin, while for the basin of Paraná, richness and evenness vary significantly between the sub-basins, but the number of individuals varied seasonally. The most important environmental factors to species diversity and abundance were altitude, water temperature, stream width and stream depth for both the basins.

scholarly journals Increased mosquito abundance and species richness in Connecticut, United States 2001–2019

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Tanya A. Petruff ◽  
Joseph R. McMillan ◽  
John J. Shepard ◽  
Theodore G. Andreadis ◽  
Philip M. Armstrong
Keyword(s):  
United States ◽  
Species Richness ◽  
Community Composition ◽  
Pathogen Transmission ◽  
Public Health Importance ◽  
Data Set ◽  
Mosquito Abundance ◽  
Total Species Richness ◽  
Multiple Species ◽  
Total Species

Abstract Historical declines in multiple insect taxa have been documented across the globe in relation to landscape-level changes in land use and climate. However, declines have either not been universally observed in all regions or examined for all species. Because mosquitoes are insects of public health importance, we analyzed a longitudinal mosquito surveillance data set from Connecticut (CT), United States (U.S.) from 2001 to 2019 to identify changes in mosquito community composition over time. We first analyzed annual site-level collections and metrics of mosquito community composition with generalized linear/additive mixed effects models; we also examined annual species-level collections using the same tools. We then examined correlations between statewide collections and weather variables as well as site-level collections and land cover classifications. We found evidence that the average trap night collection of mosquitoes has increased by ~ 60% and statewide species richness has increased by ~ 10% since 2001. Total species richness was highest in the southern portion of CT, likely due to the northward range expansion of multiple species within the Aedes, Anopheles, Culex, and Psorophora genera. How the expansion of mosquito populations in the northeast U.S. will alter mosquito-borne pathogen transmission in the region will require further investigation.

Effects of Urbanization on Stream Ecosystems

2005 ◽  
Keyword(s):  
Species Richness ◽  
Fish Species ◽  
Endemic Species ◽  
Largemouth Bass ◽  
Fish Assemblage ◽  
Life Histories ◽  
Fish Assemblages ◽  
Habitat Alterations ◽  
Intensity Index ◽  
Specialist Species

<em>Abstract.</em>—We examined fish assemblage responses to urban intensity gradients in two contrasting metropolitan areas: Birmingham, Alabama (BIR) and Boston, Massachusetts (BOS). Urbanization was quantified by using an urban intensity index (UII) that included multiple stream buffers and basin land uses, human population density, and road density variables. We evaluated fish assemblage responses by using species richness metrics and detrended correspondence analyses (DCA). Fish species richness metrics included total fish species richness, and percentages of endemic species richness, alien species, and fluvial specialist species. Fish species richness decreased significantly with increasing urbanization in BIR (<em>r </em>= –0.82, <EM>P </EM>= 0.001) and BOS (<em>r </em>= –0.48, <EM>P </EM>= 0.008). Percentages of endemic species richness decreased significantly with increasing urbanization only in BIR (<em>r </em>= – 0.71, <EM>P </EM>= 0.001), whereas percentages of fluvial specialist species decreased significantly with increasing urbanization only in BOS (<em>r </em>= –0.56, <EM>P </EM>= 0.002). Our DCA results for BIR indicate that highly urbanized fish assemblages are composed primarily of largescale stoneroller <em>Campostoma oligolepis</em>, largemouth bass <em>Micropterus salmoides</em>, and creek chub <em>Semotilus atromaculatus</em>, whereas the highly urbanized fish assemblages in BOS are dominated by yellow perch <em>Perca flavescens</em>, bluegill <em>Lepomis macrochirus</em>, yellow bullhead <em>Ameiurus natalis</em>, largemouth bass, pumpkinseed <em>L. gibbosus</em>, brown bullhead <em>A. nebulosus</em>, and redfin pickerel <em>Esox americanus</em>. Differences in fish assemblage responses to urbanization between the two areas appear to be related to differences in nutrient enrichment, habitat alterations, and invasive species. Because species richness can increase or decrease with increasing urbanization, a general response model is not applicable. Instead, response models based on species’ life histories, behavior, and autecologies offer greater potential for understanding fish assemblage responses to urbanization.

scholarly journals Mapping landscape connectivity as a driver of species richness under tectonic and climatic forcing

2019 ◽  
Vol 7 (4) ◽  
pp. 895-910 ◽  
Author(s):  
Tristan Salles ◽  
Patrice Rey ◽  
Enrico Bertuzzo
Keyword(s):  
Species Richness ◽  
Landscape Connectivity ◽  
Tectonic Activity ◽  
Climatic Forcing ◽  
Mountainous Regions ◽  
Local Species Richness ◽  
Complex Interactions ◽  
Local Species ◽  
Elevational Range ◽  
A Site

Abstract. Species distribution and richness ultimately result from complex interactions between biological, physical, and environmental factors. It has been recently shown for a static natural landscape that the elevational connectivity, which measures the proximity of a site to others with similar habitats, is a key physical driver of local species richness. Here we examine changes in elevational connectivity during mountain building using a landscape evolution model. We find that under uniform tectonic and variable climatic forcing, connectivity peaks at mid-elevations when the landscape reaches its geomorphic steady state and that the orographic effect on geomorphic evolution tends to favour lower connectivity on leeward-facing catchments. Statistical comparisons between connectivity distribution and results from a metacommunity model confirm that to the 1st order, landscape elevation connectivity explains species richness in simulated mountainous regions. Our results also predict that low-connectivity areas which favour isolation, a driver for in situ speciation, are distributed across the entire elevational range for simulated orogenic cycles. Adjustments of catchment morphology after the cessation of tectonic activity should reduce speciation by decreasing the number of isolated regions.

The Westphalian–Stephanian macrofloral record from the South Wales Coalfield, UK

2007 ◽  
Vol 144 (3) ◽  
pp. 465-486 ◽  
Author(s):  
CHRISTOPHER J. CLEAL
Keyword(s):  
Species Richness ◽  
Detailed Comparison ◽  
The South ◽  
Significant Drop ◽  
South Wales ◽  
Total Species Richness ◽  
Total Species

The South Wales Coalfield has the most complete Westphalian macrofloral record anywhere on the Variscan Foreland or adjacent basins, with 135 biodiversity-meaningful morphospecies having been recognized. All of the standard macrofloral biozones of the Westphalian Stage have been recognized, although a detailed comparison with the Central Pennines Coalfields has indicated some discrepancies in the relative positions of the biozonal boundaries. Total Species Richness progressively increases through the Langsettian Substage, and then remains relatively stable through most of the Duckmantian and Bolsovian substages. There is a distinct reduction in Total Species Richness towards the top of the Bolsovian Substage, but this partially recovers in the middle Asturian Substage with the appearance of a range of marattialean ferns, and medullosalean and callistophytaleans pteridosperms. There is no evidence of any significant drop in Total Species Richness towards the top of the succession, indicating that conditions at this time were relatively stable. The change from coastal floodplain to alluvial braidplain conditions in middle Bolsovian times correlates with a marked increase in the proportion of medullosalean remains being preserved in the adpression record, reflecting an expansion of the clastic-substrate habitats.

scholarly journals Inferring global species richness from megatransect data and undetected species estimates

2019 ◽  
Vol 88 (1) ◽  
pp. 42-53 ◽  
Author(s):  
Bernhard A. Huber ◽  
Anne Chao
Keyword(s):  
Species Richness ◽  
New Species ◽  
Confidence Interval ◽  
Incidence Data ◽  
Total Species Richness ◽  
Species Incidence ◽  
Biogeographic Regions ◽  
Global Patterns ◽  
The Impact ◽  
Total Species

Ratio-like approaches for estimating global species richness have been criticised for their unjustified extrapolation from regional to global patterns. Here we explore the use of cumulative percentages of ‘new’ (i.e., not formally described) species over large geographic areas (‘megatransects’) as a means to overcome this problem. In addition, we take into account undetected species and illustrate these combined methods by applying them to a family of spiders (Pholcidae) that currently contains some 1,700 described species. The raw global cumulative percentage of new species (‘new’ as of the end of 2008, when 1,001 species were formally described) is 75.1%, and is relatively constant across large biogeographic regions. Undetected species are estimated using the Chao2 estimator based on species incidence data (date by species and locality by species matrices). The estimated percentage of new species based on the date by species matrices is 76.0% with an estimated standard error (s.e.) of 2.6%. This leads to an estimated global species richness of about 4,200 with a 95% confidence interval of (3,300, 5,000). The corresponding values based on locality by species matrices are 84.2% (s.e. 3.0%) and 6,300 with a 95% confidence interval of (4,000, 8,600). Our results suggest that the currently known 1,700 species of Pholcidae may represent no more than about 25–40% of the total species richness. The impact of further biasing factors like geography, species size and distribution, cryptic species, and model assumptions needs to be explored.

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