Circumscription of species of Hodophilus (Clavariaceae, Agaricales) in North America with naphthalene odours

Botany ◽  
2016 ◽  
Vol 94 (10) ◽  
pp. 941-956 ◽  
Author(s):  
Slavomír Adamčík ◽  
Brian P. Looney ◽  
Joshua M. Birkebak ◽  
Soňa Jančovičová ◽  
Katarína Adamčíková ◽  
...  

Five North American Hodophilus species with naphthalene-like odours are now recognized based on sequence and (or) morphological data and molecular annotation of type collections. Two well-supported eastern North American species do not match any of the studied types and are described here as new: Hodophilus hesleri and Hodophilus smithii. The previously described Hodophilus paupertinus is found to represent an autonomous species and appears restricted to western North America. Hodophilus subfuscescens is found to be an independent lineage in eastern North America. A morphological type study of Hodophilus peckianus shows that it is a distinct species and not represented among recent collections. Multilocus phylogenetic analyses of European and North American material of species with naphthalene odours reveal no species with transatlantic distributions. Overall, Hodophilus comprises two superclades (the Hodophilus foetens superclade and the Hodophilus micaceus superclade) and 16 terminal clades that correspond to phylogenetic species. This study introduces a new approach for morphological delimitation of agaricoid Clavariaceae combining shape and dimensions of particular elements in the pileipellis and caulocystidia. All previously described taxa included in this study, which were previously treated in the genera Hygrophorus, Camarophyllopsis, or Hygrotrama, are formally transferred to Hodophilus.

MycoKeys ◽  
2018 ◽  
Vol 42 ◽  
pp. 35-72 ◽  
Author(s):  
Rachel A. Swenie ◽  
Timothy J. Baroni ◽  
P. Brandon Matheny

Five species of Hydnum have been generally recognized from eastern North America based on morphological recognition: H.albidum, H.albomagnum, H.repandum and varieties, H.rufescens, and H.umbilicatum. Other unique North American species, such as H.caespitosum and H.washingtonianum, are either illegitimately named or considered synonymous with European taxa. Here, seventeen phylogenetic species of Hydnum are detected from eastern North America based on a molecular phylogenetic survey of ITS sequences from herbarium collections and GenBank data, including environmental sequences. Based on current distribution results, sixteen of these species appear endemic to North America. Of these, six species are described as new: H.alboaurantiacum, H.cuspidatum, H.ferruginescens, H.subconnatum, H.subtilior, and H.vagabundum. Geographic range extensions and taxonomic notes are provided for five additional species recently described as new from eastern North America. A new name, H.geminum, is proposed for H.caespitosum Banning ex Peck, non Valenti. Overall, species of Hydnum are best recognized by a combination of morphological and molecular phylogenetic analyses. Taxonomic descriptions are provided for seventeen species, including epitype designations for H.albidum, H.albomagnum, and H.umbilicatum, taxa described more than 100 years ago, and molecular annotation of the isotype of H.washingtonianum. Photographs and a key to eastern North American Hydnum species are presented.


2003 ◽  
Vol 135 (4) ◽  
pp. 549-554 ◽  
Author(s):  
J. Donald Lafontaine ◽  
Kauri Mikkola

AbstractThe North American species previously treated as Xanthia togata (Esper) is shown to be a distinct species and described as new. Illustrations of adults and genitalia of X. togata and Xanthia tatago are provided.


Forests ◽  
2021 ◽  
Vol 12 (6) ◽  
pp. 751
Author(s):  
Francesco Dovana ◽  
Paolo Gonthier ◽  
Matteo Garbelotto

Phlebiopsis gigantea (Fr.) Jülich is a well-known generalist conifer wood saprobe and a biocontrol fungus used in several world countries to prevent stump infection by tree pathogenic Heterobasidion fungal species. Previous studies have reported the presence of regional and continental genetic differentiation in host-specific fungi, but the presence of such differentiation for generalist wood saprobes such as P. gigantea has not been often studied or demonstrated. Additionally, little information exists on the distribution of this fungus in western North America. The main purposes of this study were: (I) to assess the presence of P. gigantea in California, (II) to explore the genetic variability of P. gigantea at the intra and inter-continental levels and (III) to analyze the phylogeographic relationships between American and European populations. Seven loci (nrITS, ML5–ML6, ATP6, RPB1, RPB2, GPD and TEF1-α) from 26 isolates of P. gigantea from coniferous forests in diverse geographic distribution and from different hosts were analyzed in this study together with 45 GenBank sequences. One hundred seventy-four new sequences were generated using either universal or specific primers designed in this study. The mitochondrial ML5–ML6 DNA and ATP6 regions were highly conserved and did not show differences between any of the isolates. Conversely, DNA sequences from the ITS, RPB1, RPB2, GPD and TEF1-α loci were variable among samples. Maximum likelihood analysis of GPD and TEF1-α strongly supported the presences of two different subgroups within the species but without congruence or geographic partition, suggesting the presence of retained ancestral polymorphisms. RPB1 and RPB2 sequences separated European isolates from American ones, while the GPD locus separated western North American samples from eastern North American ones. This study reports the presence of P. gigantea in California for the first time using DNA-based confirmation and identifies two older genetically distinct subspecific groups, as well as three genetically differentiated lineages within the species: one from Europe, one from eastern North America and one from California, with the latter presumably including individuals from the rest of western North America. The genetic differentiation identified here among P. gigantea individuals from coniferous forests from different world regions indicates that European isolates of this fungus should not be used in North America (or vice versa), and, likewise, commercially available eastern North American P. gigantea isolates should not be used in western North America forests. The reported lack of host specificity of P. gigantea was documented by the field survey and further reinforces the need to only use local isolates of this biocontrol fungus, given that genetically distinct exotic genotypes of a broad generalist microbe may easily spread and permanently alter the microbial biodiversity of native forest ecosystems.


2021 ◽  
Vol 2 (2) ◽  
pp. 395-412
Author(s):  
Patrick Martineau ◽  
Hisashi Nakamura ◽  
Yu Kosaka

Abstract. The wintertime influence of tropical Pacific sea surface temperature (SST) variability on subseasonal variability is revisited by identifying the dominant mode of covariability between 10–60 d band-pass-filtered surface air temperature (SAT) variability over the North American continent and winter-mean SST over the tropical Pacific. We find that the El Niño–Southern Oscillation (ENSO) explains a dominant fraction of the year-to-year changes in subseasonal SAT variability that are covarying with SST and thus likely more predictable. In agreement with previous studies, we find a tendency for La Niña conditions to enhance the subseasonal SAT variability over western North America. This modulation of subseasonal variability is achieved through interactions between subseasonal eddies and La Niña-related changes in the winter-mean circulation. Specifically, eastward-propagating quasi-stationary eddies over the North Pacific are more efficient in extracting energy from the mean flow through the baroclinic conversion during La Niña. Structural changes of these eddies are crucial to enhance the efficiency of the energy conversion via amplified downgradient heat fluxes that energize subseasonal eddy thermal anomalies. The enhanced likelihood of cold extremes over western North America is associated with both an increased subseasonal SAT variability and the cold winter-mean response to La Niña.


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e7803 ◽  
Author(s):  
Daniel J. Chure ◽  
Mark A. Loewen

Allosaurus is one of the best known theropod dinosaurs from the Jurassic and a crucial taxon in phylogenetic analyses. On the basis of an in-depth, firsthand study of the bulk of Allosaurus specimens housed in North American institutions, we describe here a new theropod dinosaur from the Upper Jurassic Morrison Formation of Western North America, Allosaurus jimmadseni sp. nov., based upon a remarkably complete articulated skeleton and skull and a second specimen with an articulated skull and associated skeleton. The present study also assigns several other specimens to this new species, Allosaurus jimmadseni, which is characterized by a number of autapomorphies present on the dermal skull roof and additional characters present in the postcrania. In particular, whereas the ventral margin of the jugal of Allosaurus fragilis has pronounced sigmoidal convexity, the ventral margin is virtually straight in Allosaurus jimmadseni. The paired nasals of Allosaurus jimmadseni possess bilateral, blade-like crests along the lateral margin, forming a pronounced nasolacrimal crest that is absent in Allosaurus fragilis.


1964 ◽  
Vol 21 (5) ◽  
pp. 933-939 ◽  
Author(s):  
Richard H. Rosenblatt

A new species, Pholis clemensi, referred to the family Pholidae, is named and described from 12 specimens taken in southern British Columbia waters and the Strait of Juan de Fuca. Pholis clemensi is compared with other members of the genus, and a key is given to the North American species.


2020 ◽  
Vol 33 (6) ◽  
pp. 2427-2447 ◽  
Author(s):  
Nathaniel C. Johnson ◽  
Lakshmi Krishnamurthy ◽  
Andrew T. Wittenberg ◽  
Baoqiang Xiang ◽  
Gabriel A. Vecchi ◽  
...  

AbstractPositive precipitation biases over western North America have remained a pervasive problem in the current generation of coupled global climate models. These biases are substantially reduced, however, in a version of the Geophysical Fluid Dynamics Laboratory Forecast-Oriented Low Ocean Resolution (FLOR) coupled climate model with systematic sea surface temperature (SST) biases artificially corrected through flux adjustment. This study examines how the SST biases in the Atlantic and Pacific Oceans contribute to the North American precipitation biases. Experiments with the FLOR model in which SST biases are removed in the Atlantic and Pacific are carried out to determine the contribution of SST errors in each basin to precipitation statistics over North America. Tropical and North Pacific SST biases have a strong impact on northern North American precipitation, while tropical Atlantic SST biases have a dominant impact on precipitation biases in southern North America, including the western United States. Most notably, negative SST biases in the tropical Atlantic in boreal winter induce an anomalously strong Aleutian low and a southward bias in the North Pacific storm track. In boreal summer, the negative SST biases induce a strengthened North Atlantic subtropical high and Great Plains low-level jet. Each of these impacts contributes to positive annual mean precipitation biases over western North America. Both North Pacific and North Atlantic SST biases induce SST biases in remote basins through dynamical pathways, so a complete attribution of the effects of SST biases on precipitation must account for both the local and remote impacts.


1996 ◽  
Vol 128 (4) ◽  
pp. 613-665 ◽  
Author(s):  
D.J. Larson

AbstractSpecies of the Agabus opacus- and lineellus-groups, as defined by Larson (1989), are combined and revised as members of the A. opacus-group. The A. opacus-group contains 13 species, namely: A. hypomelas Mannerheim, A. vancouverensis Leech, A. verisimilis Brown, A. vandykei Leech, A. wasastjernae (Sahlberg), A. opacus Aubé, A. confertus LeConte, A. euryomus sp.nov., A. walsinghami (Crotch), A. jimzim sp.nov., A. lineellus LeConte, A. discors LeConte, and A. austrodiscors sp.nov. Agabus wasastjernae and A. opacus are Holarctic and boreal; the remaining 11 species are confined to the Cordilleran region of western North America. Character distribution does not support recognition of subspecies of A. hypomelas, therefore A. hypomelas irregularis Mannerheim is regarded as a synonym of A. hypomelas. A lectotype is designated for A. discors LeConte. A phylogenetic tree of the hypothesized relationships between the species is presented.A key to the species of the group is included. For each species, the following information is provided: synonymy; description and illustration of taxonomically important characters; notes on relationships, variation, distribution, and ecology; and a map of North American collection localities.


2005 ◽  
Vol 142 (4) ◽  
pp. 377-398 ◽  
Author(s):  
J. M. ADRAIN ◽  
S. R. WESTROP

The Notch Peak Formation (Late Cambrian, Sunwaptan) of western Utah yields diverse silicified trilobite faunas that provide new information on the anatomy of many taxa. The family Ptychaspididae Raymond, 1924, is represented by species of Keithiella Rasetti, 1944; Idiomesus Raymond, 1924; Euptychaspis Ulrich in Bridge, 1931; and Macronoda Lochman, 1964. At least four species are new, of which E. lawsonensis and M. notchpeakensis are named formally. Much previous work on Late Cambrian trilobites has emphasized biostratigraphic utility and the recognition of geographically widespread species. Data from new silicified collections indicate that this approach is difficult to justify because many putative ‘index species’ actually represent a plexus of closely related species whose biostratigraphic significance has yet to be determined. One such plexus is represented by E. kirki Kobayashi, 1935, whose previously reported occurrences in Texas, Oklahoma, Utah, Nevada and northern Canada record at least four distinct species. Similarly, Macronoda can now be shown to consist of at least five late Sunwaptan species in south-central and western North America.


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