Genetic and plastic responses in geographic differentiation of Bromus rubens populations

1978 ◽  
Vol 56 (7) ◽  
pp. 873-879 ◽  
Author(s):  
K. K. Wu ◽  
S. K. Jain

Populations of B. rubens were sampled in the northern and central Coastal Ranges and northern Central Valley of California to study the geographic variation patterns. Quantitative estimates of variation were obtained on plants collected in nature, and their progenies were grown under controlled environments. Discriminant function analysis was used to estimate the variation among populations in both natural and controlled environments for four quantitative characters. These variations appear approximately proportional to the geographical distances among localities and to the measures of genetic differentiation. It was found that for these four quantitative characters, about 12–27% of the total geographic variation among natural populations of B. rubens was contributed by genetic differentiation, while the rest (73–88%) was contributed by the so-called plastic response (nongenetic variation) to different local environments. This finding suggested that phenotypic plasticity is important for the wide adaptability of this species.The similarity between the dendrogram patterns of both genetic similarity and phenotypic similarity for esterases and quantitative characters, respectively, suggested that the observed variation may be adaptive and correlated with environmental components of climate and habitat diversity. Such comparisons of different character sets may provide a useful way of deriving the adaptive basis of geographic variation.

Encuentro ◽  
2016 ◽  
pp. 28-39
Author(s):  
Arlen Tijerino ◽  
Lourdes Callejas ◽  
David A. Cerda-Granados

The goal of this study was to assess the genetic diversity of Nicaraguan populations of Cedrela odorata using Random Amplified Polymorphic DNA (RAPD) markers. Thus, genomic DNA was isolated from leaf samples collected from ninety-two trees belonging to five Nicaraguan natural populations of C. odorata. The mean number of alleles per locus, effective number of alleles per locus, percentage of polymorphic loci, genetic diversity (He ) of Nei and diversity index (Ho ) of Shannon were estimated for each population assuming that the populations were in HardyWeinberg equilibrium. Total genetic diversity was partitioned in intrapopulational and interpopulational diversity using Nei’s genetic differentiation (GST) and through an Analysis of Molecular Variance (AMOVA). The ΦST matrix was used to construct a dendrogram by the neighbor-joining method. According to values of both He and Ho , Esquipulas (Deparment of Matagalpa) presented the lowest diversity level; while La Trinidad (Department of Estelí) showed the highest diversity level. Genetic differentiation was calculated obtaining a GST value of 13.36%. AMOVA also showed a similar differentiation value ΦST =13.81%). Neighbour-joining dendrogram clustered the five populations in two groups, where the group formed by La Trinidad and El Refugio (Department of Granada) presented the biggest differentiation. Correlation between genetic and geographical distances was not found.


2018 ◽  
Vol 194 ◽  
pp. 188-192
Author(s):  
D. I. Shokasheva

Natural populations of crayfish are in depression in Russia and local species are not cultivated. In this situation, experimental cultivation of allochtonous australian crayfish Cherax quadricarinatus is conducted. This species is distinguished by high reproductive abilities and good consumer properties. It has domesticated in Russia spontaneously and produced 9–10 generations in Astrakhan Region. Certain natural selection in the process of domestication provides adaptive ability of this species to local environments and its capabil­ity to reproduce a viable progeny, so there is no doubts in good prospects of its cultivation in industrial conditions.


Genetics ◽  
1982 ◽  
Vol 101 (2) ◽  
pp. 235-256
Author(s):  
Rama S Singh ◽  
Donal A Hickey ◽  
Jean David

ABSTRACT We have studied allozyme variation at 26 gene loci in nine populations of Drosophila melanogaster originating on five different continents. The distant populations show significant genetic differentiation. However, only half of the loci studied have contributed to this differentiation; the other half show identical patterns in all populations. The genetic differentiation in North American, European and African populations is correlated with the major climatic differences between north and south. These differences arise mainly from seven loci that show gene-frequency patterns suggestive of latitudinal clines in allele frequencies. The clinal variation is such that subtropical populations are more heterozygous than temperate populations. These results are discussed in relation to the selectionist and neutralist hypotheses of genetic variation in natural populations.


1984 ◽  
Vol 62 (7) ◽  
pp. 1329-1339 ◽  
Author(s):  
D. M. Blouw ◽  
D. W. Hagen

The goal of our research is to investigate the adaptive significance of a polymorphism for the number of dorsal spines in Apeltes quadracus, the fourspine stickleback. One approach we take is to search for correlations between phenotypes and environments. To this end we collected Apeltes and scored environments at 570 sites in the Maritime Provinces of Canada. In this paper we describe geographic variation in spine number and evaluate how reliably it reflects genetic differentiation among sites. Morph frequencies are highly differentiated geographically. We describe four kinds of variation: relatively constant frequencies, gentle clines, steep clines, and remarkably abrupt changes (called "intrusions") where frequencies at some sites differ greatly from those at a larger number of surrounding sites. Most of the variation among sites is due to differences in the frequencies of the four- and five-spined morphs. However, a remarkable result is that the three-spined morph, which is rare or absent elsewhere in the range, reaches very high frequencies in Bras D'Or Lake. Our evidence suggests this variation among sites reflects substantial genetic differentiation. The differentiation is favorable for detecting selective agents, if indeed selection is responsible.


2004 ◽  
Vol 76 (2) ◽  
pp. 386-392 ◽  
Author(s):  
Carmen Bazúa-Durán

Several methods have been used to compare the whistles produced by dolphins. The two methods used in this study are: (1) a classification of whistle contours in six categories (i.e. constant frequency, upsweep, downsweep, concave, convex, and sine) and (2) the extraction of frequency and time parameters from each whistle contour. Bottlenose Dolphin Tursiops truncatus whistles are described in the same way when comparing whistle contour distributions in each of the six categories and whistle frequency and time parameters using Discriminant Function Analysis. For Spinner Dolphin Stenella longirostris whistles, each method describes whistles differently. Several facts may explain these differences in describing dolphin whistles, such as a greater fluidity of Spinner Dolphin groups when compared to Bottlenose Dolphin groups, greater geographic variation in the whistles of Bottlenose Dolphins than in those of Spinner Dolphins, an average beginning frequency 16% lower than the average ending frequency in Spinner Dolphin whistles compared to a varied relationship for Bottlenose Dolphins, and stricter criteria used to define whistle contour categories in the study of Spinner Dolphin whistles than in the Bottlenose Dolphin whistle study.


2021 ◽  
Author(s):  
Guai-qiang Chai ◽  
Yizhong Duan ◽  
Peipei Jiao ◽  
Zhongyu Du ◽  
Furen Kang

Abstract Background:Elucidating and revealing the population genetic structure, genetic diversity and recombination is essential for understanding the evolution and adaptation of species. Ammopiptanthus, which is an endangered survivor from the Tethys in the Tertiary Period, is the only evergreen broadleaf shrub grown in Northwest of China. However, little is known about its genetic diversity and underlying adaptation mechanisms. Results:Here, 111 Ammopiptanthus individuals collected from fifteen natural populations in estern China were analyzed by means of the specific locus amplified fragment sequencing (SLAF-seq). Based on the single nucleotide polymorphisms (SNPs) and insertions and deletions (InDels) detected by SLAF-seq, genetic diversity and markers associated with climate and geographical distribution variables were identified. The results of genetic diversity and genetic differentiation revealed that all fifteen populations showed medium genetic diversity, with PIC values ranging from 0.1648 to 0.3081. AMOVA and Fst indicated that a low genetic differentiation existed among populations. Phylogenetic analysis showed that NX-BG and NMG-DQH of fifteen populations have the highest homology,while the genetic structure analysis revealed that these Ammopiptanthus germplasm accessions were structured primarily along the basis of their geographic collection, and that an extensive admixture occurred in each group. In addition, the genome-wide linkage disequilibrium (LD) and principal component analysis showed that Ammopiptanthus nanus had a more diverse genomic background, and all genetic populations were clearly distinguished, although different degrees of introgression were detected in these groups. Conclusion:Our study could provide guidance to the future design of association studies and the systematic utilization and protection of the genetic variation characterizing the Ammopiptanthus.


Genetics ◽  
1978 ◽  
Vol 88 (2) ◽  
pp. 367-390
Author(s):  
Ranajit Chakraborty ◽  
Paul A Fuerst ◽  
Masatoshi Nei

ABSTRACT With the aim of testing the validity of the mutation-drift hypothesis, we examined the pattern of genetic differentiation between populations by using data from Drosophila, fishes, reptiles, and mammals. The observed relationship between genetic identity and correlation of heterozygosities of different populations or species was generally in good agreement with the theoretical expectations from the mutation-drift theory, when the variation in mutation rate among loci was taken into account. In some species of Drosophila, however, the correlation was unduly high. The relationship between the mean and variance of genetic distance was also in good agreement with the theoretical prediction in almost all organisms. We noted that both the distribution of heterozygosity within species and the pattern of genetic differentiation between species can be explained by the same set of genetic parameters in each group of organisms. Alternative hypotheses for explaining these observations are discussed.


Genetika ◽  
2006 ◽  
Vol 38 (2) ◽  
pp. 97-105 ◽  
Author(s):  
Víctor Salceda ◽  
José Espinoza-Velazquez

Chromosomal polymorphism for the third chromosome in Drosophila pseudoobscura has been widely studied for genetic variation in different environments or locations far apart. However, there is less information regarding sites geographically near one another. Targeting on possible micro-geographic variation in the species, a serial study was done on 12 Mexican populations grouped in four regions, including locations in Durango (DU), the border area of Guanajuato-San Luis Potosi states (GP), Chiapas (CH) and Saldilo (SA). Flies were trapped in their natural habitats using fermenting bananas as bait. They were individually cultivated in the laboratory for larvae production. In a given population sample several flies were cultivated together but only one larva per culture provided salivary tissue to observe polytene chromosomes. Gene arrangements or inversions were identified and frequencies were calculated. A total of 767 third chromosomes were studied and 11 different inversions detected. The type and relative frequencies of the arrangements varied among regions. From the 11 inversions observed, 10 were found in Durango, five in Guanajuato-San Luis Potosi and Chiapas, and eight in Saltillo. The inversion frequencies in the Durango locations varied in four cases, but only one in Chiapas, three cases in Guanajuato-San Luis Potosi, and five in Saltillo. It was also observed that there were geographical gradients for inversions within regions as follows: four arrangements in Saltillo and Durango, three in Guanajuato-San Luis Potos? and one in Chiapas. Moreover, all four regions studied showed evidences for micro-geographical variation. Nevertheless, more studies are needed to elucidate the relevance of the inversion frequencies changes in neighboring populations and also any seasonal-annual frequencies observed in the locations studied here.


2007 ◽  
Vol 64 (4) ◽  
pp. 409-415 ◽  
Author(s):  
Bianca Waléria Bertoni ◽  
Spartaco Astolfi Filho ◽  
Ernani Ronie Martins ◽  
Carlos Ferreira Damião Filho ◽  
Suzelei de Castro França ◽  
...  

Zeyheria montana, an endemic species of the Bignoniaceae family from the Brazilian Cerrado's known for its anti-cancer properties, is widely used as imuno stimulant in the popular medicine and its therapeutic activity must be validated by scientific data. The objective of this work was to evaluate the genetic variability of eight plant populations collected within the state of São Paulo, Brazil, via Random Amplification of Polymorphic DNA (RAPD) used as molecular markers. After an optimized protocol for the amplification reaction, nine selected primers generated 105 reproducible bands, indicating up to 60% polymorphism. Analysis of molecular variance (AMOVA) revealed higher genetic variation within populations (84.03%) than among populations (15.97%). The variation values estimated by phiST (0.160) indicated moderate to high inter population structuration. Levels of similarity inter plants with genetic and geographical distances, estimated by the unweighted pair-group method analysis (UPGMA) clustering and non-metric multidimensional scaling (NMDS) ordination methods and by the Mantel test (-0.2345 p = 0.118) denoted that the structure found follows the island model, which assumes that a single population of infinite size may have initiated the existing populations of Zeyheria montana, with no spatial position correlation. Based on the obtained data, a germplasm bank from individuals representing the species variability was established. Furthermore the information here reported can be of importance to develop strategies for the conservation of Z. montana.


2020 ◽  
Vol 11 ◽  
Author(s):  
Francisco J. Jiménez-López ◽  
Pedro L. Ortiz ◽  
María Talavera ◽  
Montserrat Arista

Flower color polymorphism, an infrequent but phylogenetically widespread condition in plants, is captivating because it can only be maintained under a few selective regimes but also because it can drive intra-morph assortative mating and promote speciation. Lysimachia arvensis is a polymorphic species with red or blue flowered morphs. In polymorphic populations, which are mostly Mediterranean, pollinators prefer blue-flowered plants to the red ones, and abiotic factors also favors blue-flowered plants. We hypothesize that the red morph is maintained in Mediterranean areas due to its selfing capacity. We assessed inbreeding depression in both color morphs in two Mediterranean populations and genetic diversity was studied via SSR microsatellites in 20 natural populations. Results showed that only 44–47% of selfed progeny of the red plants reached reproduction while about 72–91% of blue morph progeny did it. Between-morph genetic differentiation was high and the red morph had a lower genetic diversity and a higher inbreeding coefficient, mainly in the Mediterranean. Results suggest that selfing maintaining the red morph in Mediterranean areas despite its inbreeding depression. In addition, genetic differentiation between morphs suggests a low gene flow between them, suggesting reproductive isolation.


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