Comparison of Puccinia acroptili from Eurasia and the USA

Botany ◽  
2012 ◽  
Vol 90 (6) ◽  
pp. 465-471 ◽  
Author(s):  
W.L. Bruckart ◽  
F.M. Eskandari ◽  
D.K. Berner ◽  
M.C. Aime
Keyword(s):  
Dna Sequence ◽  
Sequence Data ◽  
Large Subunit ◽  
Single Species ◽  
The United States ◽  
Rust Disease ◽  
Dna Sequence Data ◽  
Russian Knapweed ◽  
The Usa ◽  
Recent Evaluation

A rust disease caused by Puccinia acroptili P. Syd. & Syd. occurs throughout the range of Russian knapweed (Rhaponticum (syn. Acroptilon) repens), including North America. Differences in teliospore dimensions had been observed previously, but not quantified, between a specimen of P. acroptili from Turkey and one from the United States of America (USA). Similar differences were found during a recent evaluation of P. acroptili for biological control of R. repens in the USA; e.g., teliospores from eight USA isolates were 2.4 µm shorter (P = 0.05) than four isolates from Eurasia (two from Turkey, and one each from Russia and Kazakhstan). This inspired the generation of additional biological and DNA sequence data to clarify the significance of these differences between USA and Eurasian isolates. Although the USA isolates were found to have shorter teliospores, as noted in the description by Savile, teliospores of the USA isolates were also significantly wider in diameter than isolates from Eurasia; the latter in contrast to Savile’s observation. Biologically, the isolates were the same; all were equally aggressive in causing disease under common greenhouse test conditions, and fertile crosses occurred between isolates regardless of source. DNA sequence analyses of the nuclear rDNA large subunit and internal transcribed spacer regions supported the notion that P. acroptili is a single species, but it also revealed that small levels of variation may exist within the species. For these reasons, it has been concluded that USA and Eurasian accessions can be considered a single species, i.e., P. acroptili. Also, Savile’s observation about differences in spore dimensions is substantiated.

scholarly journals Veterinary Fusarioses within the United States

2016 ◽  
Vol 54 (11) ◽  
pp. 2813-2819 ◽  
Author(s):  
Kerry O'Donnell ◽  
Deanna A. Sutton ◽  
Nathan Wiederhold ◽  
Vincent A. R. G. Robert ◽  
Pedro W. Crous ◽  
...  
Keyword(s):  
United States ◽  
Dna Sequence ◽  
Species Complex ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
The United States ◽  
Content Type ◽  
Dna Sequence Data ◽  
Species Complexes

Multilocus DNA sequence data were used to assess the genetic diversity and evolutionary relationships of 67Fusariumstrains from veterinary sources, most of which were from the United States. Molecular phylogenetic analyses revealed that the strains comprised 23 phylogenetically distinct species, all but two of which were previously known to infect humans, distributed among eight species complexes. The majority of the veterinary isolates (47/67 = 70.1%) were nested within theFusarium solanispecies complex (FSSC), and these included 8 phylospecies and 33 unique 3-locus sequence types (STs). Three of the FSSC species (Fusarium falciforme,Fusarium keratoplasticum, andFusariumsp. FSSC 12) accounted for four-fifths of the veterinary strains (38/47) and STs (27/33) within this clade. Most of theF. falciformestrains (12/15) were recovered from equine keratitis infections; however, strains ofF. keratoplasticumandFusariumsp. FSSC 12 were mostly (25/27) isolated from marine vertebrates and invertebrates. Our sampling suggests that theFusarium incarnatum-equisetispecies complex (FIESC), with eight mycoses-associated species, may represent the second most important clade of veterinary relevance withinFusarium. Six of the multilocus STs within the FSSC (3+4-eee, 1-b, 12-a, 12-b, 12-f, and 12-h) and one each within the FIESC (1-a) and theFusarium oxysporumspecies complex (ST-33) were widespread geographically, including three STs with transoceanic disjunctions. In conclusion, fusaria associated with veterinary mycoses are phylogenetically diverse and typically can only be identified to the species level using DNA sequence data from portions of one or more informative genes.

scholarly journals Deep phylogeographic splits but no taxonomic structure in the disjointly distributed Draba pacheri (Brassicaceae), a subendemic of the Eastern Alps

2021 ◽  
Author(s):  
Erich Kucs ◽  
Peter Schönswetter ◽  
Gerald M. Schneeweiss
Keyword(s):  
Dna Sequence ◽  
Sequence Data ◽  
Single Species ◽  
Eastern Alps ◽  
Phylogenetic Position ◽  
Taxonomic Structure ◽  
European Alps ◽  
Aflp Data ◽  
Dna Sequence Data ◽  
Mountain Habitats

AbstractDraba (Brassicaeae), a model group for diversification and evolution in Arctic and mountain habitats, is taxonomically challenging and many of its species are insufficiently investigated. One such species is D. pacheri, an endemic of the eastern European Alps and the western Carpathians (here presumably extinct). Several hypotheses exist with respect to the phylogenetic position and the taxonomy of this species, but none of these has ever been tested using molecular data. In this article we examine (i) DNA sequence data to assess the phylogenetic position of D. pacheri within the genus and (ii) AFLP fingerprint data as well as morphometric data to address whether this species can be divided taxonomically into species or subspecies. DNA sequence data firmly place D. pacheri within the Core Draba Group III, whose internal relationships are, however, insufficiently resolved to precisely identify the closest relative of D. pacheri. AFLP data identify several genetically divergent lineages corresponding to geographically distinct regions. Although these lineages are congruent with hypotheses distinguishing either two species (D. pacheri s. str., D. norica) or one species with several subspecies, the lack of clear morphological separation, both with respect to the entire set of traits and single presumably diagnostic characters such as trichome morphology, renders recognition of a single species D. pacheri, as suggested previously, the best taxonomic solution. The deep and geographically strongly structured splits of D. pacheri likely are the result of isolation in several Pleistocene refugia and warrant that conservation efforts should involve populations from each of the main geographic subgroups.

Delayed germination of basidiospores in temperate species of Crepidotus (Fr.) Staude

2002 ◽  
Vol 80 (3) ◽  
pp. 280-287 ◽  
Author(s):  
M C Aime ◽  
O K Miller Jr.
Keyword(s):  
Dna Sequence ◽  
Sequence Data ◽  
Abiotic Factors ◽  
Large Subunit ◽  
Early Spring ◽  
Single Spore ◽  
Dna Sequence Data ◽  
Delayed Germination ◽  
First Time ◽  
Ribosomal Dna Sequence

Delayed basidiospore germination (endogenous dormancy) for a number of species of Crepidotus (Agaricales: Crepidotaceae) is reported for the first time. Ninety percent of recovered single spore isolates germinated between 18 and 36 weeks after collection; average germination was 25 weeks after collection. The period in which 90% of germinations occurred was between 17 February and 19 April, with 50% of recovered isolates germinating in March. Many abiotic factors were experimentally manipulated in an effort to reduce or alter the necessary incubation period without effect. The latent period was consistent for a given collection, with the majority of recovered isolates from fall-fruiting collections germinating during early spring, regardless of whether spores were plated immediately after harvesting or stored for one to several months prior to plating. The identity of the cultures derived from delayed germination was confirmed by DNA sequencing.Key words: basidiospore, dormancy, single spore isolates, Crepidotaceae, large subunit ribosomal DNA sequence data, phylogeny.

scholarly journals Three new species of Fomitiporella (Hymenochaetales, Basidiomycota) based on the evidence from morphology and DNA sequence data

MycoKeys ◽  
2018 ◽  
Vol 30 ◽  
pp. 73-89 ◽  
Author(s):  
Xiao-Hong Ji ◽  
Josef Vlasák ◽  
Xue-Mei Tian ◽  
Yu-Cheng Dai
Keyword(s):  
New Species ◽  
Dna Sequence ◽  
Sequence Data ◽  
Large Subunit ◽  
Its Region ◽  
Morphological Characters ◽  
White Rot ◽  
Molecular Evidence ◽  
Dna Sequence Data ◽  
Three New Species

Fomitiporella austroasiana, F. mangrovei and F. vietnamensis are described and illustrated as new species based on morphological characters and molecular evidence. They have annual to perennial, mostly resupinate basidiomata with grayish fresh pores, an indistinct subiculum, lack any kind of setae, have brownish, thick-walled basidiospores, and cause a white rot. The distinctive morphological characters of the new species and their related species are discussed. Phylogenies based on the nuclear ribosomal large subunit (28S) and the nuclear ribosomal ITS region show that these three new species form three distinct lineages in the Fomitiporella clade. A key to known species of Fomitiporella is given.

scholarly journals Reappraisal of Immotthia in Dictyosporiaceae, Pleosporales: Introducing Immotthia bambusae sp. nov. and Pseudocyclothyriella clematidis comb. et gen. nov. Based on Morphology and Phylogeny

2021 ◽  
Vol 12 ◽  
Author(s):  
Hong-Bo Jiang ◽  
Rajesh Jeewon ◽  
Samantha C. Karunarathna ◽  
Chayanard Phukhamsakda ◽  
Mingkwan Doilom ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Phylogenetic Trees ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Characteristics ◽  
Single Species ◽  
Type Specimen ◽  
Morphological Identification ◽  
Ongoing Research ◽  
Dna Sequence Data

Immotthia is a poorly known genus, and currently, no DNA sequence data are available to ascertain its proper phylogenetic placement and evolutionary relationships with other bitunicate fungi. To date, there are only two species accepted in the genus. During our ongoing research study of bambusicolous fungi in southwest China and Thailand, a fungus associated with stromata of Hypoxylon sp. was found on dead bamboo culms in Loei Province, Thailand. Preliminary morphological identification revealed that the fungal collection belongs to Immotthia. A novel species, Immotthia bambusae, is introduced herein based on a comparison of morphological characteristics with the type specimen of I. hypoxylon (≡ Amphisphaeria hypoxylon Ellis and Everh.), a synonym of I. atrograna (Cooke and Ellis) M. E. Barr. Phylogenetic analyses of a concatenated ITS, LSU, SSU, and TEF1-α DNA sequence matrix showed that Immotthia belongs to Dictyosporiaceae, Pleosporales. Despite I. bambusae strains constituting a supported subclade, they are nested with the genus Pseudocoleophoma. Pseudocoleophoma clematidis is morphologically different from all other Pseudocoleophoma species, while its conidial characteristics are similar to Cyclothyriella. Multigene phylogenetic analyses showed that P. clematidis formed a clade basal to Immotthia, separated from Pseudocoleophoma with strong statistical support. Therefore, we introduce a monotypic genus, Pseudocyclothyriella Phukhams. and Phookamsak, gen. nov. to accommodate the single species, Pseudocyclothyriella clematidis (Phukhams. and K. D. Hyde) Phukhams. and Phookamsak, comb. nov. Detailed descriptions, color micrographs, and phylogenetic trees to show the placement of the new taxa are provided. In addition, an updated taxonomic treatment of the genera Immotthia and Pseudocyclothyriella is also provided based on the study of the type materials and phylogeny generated from DNA sequence data.

scholarly journals Phylogeny and PCR Identification of Clinically Important Zygomycetes Based on Nuclear Ribosomal-DNA Sequence Data

1999 ◽  
Vol 37 (12) ◽  
pp. 3957-3964 ◽  
Author(s):  
Kerstin Voigt ◽  
Elizabeth Cigelnik ◽  
Kerry O'donnell
Keyword(s):  
Dna Sequence ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Sequence Data ◽  
Large Subunit ◽  
Gene Tree ◽  
Strong Support ◽  
Nuclear Ribosomal Dna ◽  
Syncephalastrum Racemosum ◽  
Dna Sequence Data

A molecular database for all clinically important Zygomycetes was constructed from nucleotide sequences from the nuclear small-subunit (18S) ribosomal DNA and domains D1 and D2 of the nuclear large-subunit (28S) ribosomal DNA. Parsimony analysis of the aligned 18S and 28S DNA sequences was used to investigate phylogenetic relationships among 42 isolates representing species of Zygomycetes reported to cause infections in humans and other animals, together with commonly cultured contaminants, with emphasis on members of the Mucorales. The molecular phylogeny provided strong support for the monophyly of the Mucorales, exclusive of Echinosporangium transversale andMortierella spp., which are currently misclassified within the Mucorales. Micromucor ramannianus, traditionally classified within Mortierella, and Syncephalastrum racemosum represent the basal divergences within the Mucorales. Based on the 18S gene tree topology, Absidia corymbiferaand Rhizomucor variabilis appear to be misplaced taxonomically. A. corymbifera is strongly supported as a sister group of the Rhizomucor miehei-Rhizomucor pusillusclade, while R. variabilis is nested withinMucor. The aligned 28S sequences were used to design 13 taxon-specific PCR primer pairs for those taxa most commonly implicated in infections. All of the primers specifically amplified DNA of the size predicted based on the DNA sequence data from the target taxa; however, they did not cross-react with phylogenetically related species. These primers have the potential to be used in a PCR assay for the rapid and accurate identification of the etiological agents of mucormycoses and entomophthoromycoses.

Phylogeny of the Crepidula plana (Gastropoda: Calyptraeidae) cryptic species complex in North America

2000 ◽  
Vol 78 (8) ◽  
pp. 1500-1514 ◽  
Author(s):  
Rachel Collin
Keyword(s):  
North Carolina ◽  
North America ◽  
Species Complex ◽  
East Coast ◽  
Sequence Data ◽  
Single Species ◽  
The United States ◽  
Molecular Techniques ◽  
Dna Sequence Data ◽  
Cryptic Species Complex

The taxonomy of Crepidula species with flat white shells is particularly difficult. These animals from the east coast of North America have generally been classified as a single species, Crepidula plana Say, 1822. Based on allozyme and developmental data, however, Hoagland (K.E. Hoagland. 1984. Malacologia, 25: 607-628; K.E. Hoagland. 1986. Am. Malacol. Bull. 4: 173-183) concluded that two species of flat white-shelled Crepidula live along the east coast of the United States, but she did not apply any name to the second species. Herein I use molecular techniques to characterize populations of flat white-shelled Crepidula species from Texas, Florida, Georgia, North Carolina, and |Massachusetts, and describe their morphology and development. DNA-sequence data support the existence of three species. One species is readily distinguished on the basis of morphology and development, but the other two are very similar. To clarify the nomenclature of these species, I designate neotypes for C. plana Say, 1822 and Crepidula depressa Say, 1822, and describe Crepidula atrasolea sp.nov.

A morpho-molecular re-appraisal of Polystigma fulvum and P. rubrum (Polystigma, Polystigmataceae)

Phytotaxa ◽  
2019 ◽  
Vol 422 (3) ◽  
pp. 209-224
Author(s):  
DIGVIJAYINI BUNDHUN ◽  
RAJESH JEEWON ◽  
MONIKA C. DAYARATHNE ◽  
TIMUR S. BULGAKOV ◽  
ALEXANDER K. KHRAMTSOV ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Internal Transcribed Spacer ◽  
Sequence Data ◽  
Large Subunit ◽  
Conidiogenous Cell ◽  
Nuclear Rdna ◽  
Asexual Morph ◽  
Dna Sequence Data ◽  
Sexual Morph ◽  
First Time

Collections of eleven Prunus specimens infected with Polystigma species from Belarus and Russia yielded two existing taxa: Polystigma fulvum (sexual morph) and Polystigma rubrum (asexual morph). DNA based phylogenies of large subunit nuclear rDNA (LSU) and nuclear ribosomal internal transcribed spacer (ITS) are provided for the first time for Polystigma fulvum and its placement is confirmed within Polystigmataceae. The concatenated LSU and ITS DNA sequence data for P. rubrum, analyzed to infer its potential relationship to other Polystigma species, also show that strains of P. rubrum are segregated into two subclades with sufficient genetic differences. No significant differences in morphology or morphometry among the strains of P. rubrum between the two subclades, especially vis-à-vis the conidiogenous cell and conidium sizes are observed (P>0.05). Subspecies concept of P. rubrum complex is discussed.

Two new cryptogonimid genera Beluesca n. gen. and Chelediadema n. gen. (Digenea: Cryptogonimidae) from tropical Indo-West Pacific  Haemulidae (Perciformes)

Zootaxa ◽  
2007 ◽  
Vol 1543 (1) ◽  
pp. 45-60 ◽  
Author(s):  
TERRENCE L. MILLER ◽  
THOMAS H. CRIBB
Keyword(s):  
Dna Sequence ◽  
Host Preference ◽  
Sequence Data ◽  
Large Subunit ◽  
Internal Transcribed Spacers ◽  
Nuclear Ribosomal Dna ◽  
Minimum Evolution ◽  
West Pacific ◽  
Pyloric Caeca ◽  
Dna Sequence Data

A survey of the parasites of Indo-West Pacific Haemulidae revealed the presence of three new cryptogonimid (Digenea: Cryptogonimidae) species warranting two new genera, Beluesca littlewoodi n. gen., n. sp. and B. longicolla n. sp. from the intestine and pyloric caeca of Plectorhinchus gibbosus and Chelediadema marjoriae n. gen., n. sp. from the intestine and pyloric caeca of Diagramma labiosum, P. albovittatus and P. gibbosus from Heron and Lizard Islands off the Great Barrier Reef, Australia. Beluesca n. gen. is distinguished from all other cryptogonimid genera by the combination of an elongate body, funnel-shaped oral sucker, relatively small number of large oral spines, highly lobed ovary, opposite to slightly oblique testes, uterine loops that are restricted to the hindbody and extend well posterior to the testes and vitelline follicles that may extend from the ovary into the forebody, but do not extend anterior to the intestinal bifurcation. Pseudallacanthochasmus plectorhynchi Mamaev, 1970 is transferred to Beluesca as B. plectorhyncha (Mamaev, 1970) n. comb. based on morphological and ecological (host preference) characteristics. Chelediadema n. gen. is distinguished from all other cryptogonimid genera by the combination of a lanceolate body, relatively small number of large oral spines, prepharynx that is much longer than the oesophagus, tandem testes, uterine loops that are extensive in the hindbody and extend well posterior to the testes and vitelline follicles that extend from the ovary to the pharynx. Morphological analysis of the three species described here was augmented with DNA sequence analyses utilizing data from the large subunit (LSU) and the internal transcribed spacers (ITS) 1 and 2, and 5.8S nuclear ribosomal DNA. Sequence data from the LSU and ITS (encompassing the ITS1, 5.8S and ITS2) of the taxa examined here were aligned with those reported for other cryptogonimids, Caulanus thomasi, Latuterus tkachi, Neometadena ovata, four representative species of Retrovarium and an undescribed species of Siphoderina, for comparative purposes and to explore levels of interspecific and intergeneric variation among these taxa. Minimum evolution analysis was conducted on a combined (LSU and ITS) dataset to explore relationships among these genera. Despite their superficial morphological and host preference similarities, species of Beluesca and Chelediadema were genetically distant from each other. Interspecific and intergeneric variation among the species described here is similar to that reported for other cryptogonimids.

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